Merge pull request #39 from cpp-lln-lab/dev

[REL] 0.2.1

Author: Remi-Gau

.github/release-drafter.yml

@@ -0,0 +1,5 @@
+template: |
+  ## Release Notes
+
+  ## CHANGES
+  $CHANGES

.github/workflows/miss_hit_code_quality.yml

@@ -14,7 +14,7 @@ jobs:
 
   build:
 
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
 
     steps:
 
@@ -54,4 +54,4 @@ jobs:
           file: coverage.xml # optional
           flags: unittests # optional
           name: codecov-umbrella # optional
-          fail_ci_if_error: true # optional (default = false)
+          fail_ci_if_error: false # optional (default = false)

.github/workflows/miss_hit_code_style.yml

@@ -13,6 +13,7 @@ lib/JSONio
 coverage_html
 coverage.xml
 test_report.log
+mapping.md
 
 ## MATLAB / OCTAVE gitignore template
 

.github/workflows/run_tests_matlab.yml

@@ -2,7 +2,7 @@ cff-version: 1.2.0
 
 title: "spm_2_bids"
 
-version: 0.2.0dev
+version: 0.2.1
 
 abstract: Toolbox to convert SPM output files to valid BIDS derivatives.
 

.gitignore

@@ -22,7 +22,8 @@
 author = "Rémi Gau"
 
 # The full version, including alpha/beta/rc tags
-release = "v0.2.0dev"
+with open('../../version.txt', encoding='utf-8') as version_file:
+    release = version_file.read()
 
 
 # -- General configuration ---------------------------------------------------

CITATION.cff

@@ -1,4 +1,4 @@
-function init_spm_2_bids
+function init_spm_2_bids(add_dev)
     %
     % 1 - Check if version requirements
     % are satisfied and the packages are
@@ -15,6 +15,10 @@
     %
     % (C) Copyright 2021 spm_2_bids developers
 
+    if nargin < 1
+        add_dev = false;
+    end
+
     OCTAVE_VER = '4.0.3';
     MATLAB_VER = '8.6.0';
 
@@ -53,7 +57,10 @@
 
     end
 
-    add_dependencies();
+    add_dependencies(add_dev);
+
+    pth = fileparts(mfilename('fullpath'));
+    addpath(genpath(fullfile(pth, 'src')));
 
     disp('Correct matlab/octave versions and added to the path!');
 
@@ -90,11 +97,12 @@ function try_install_from_forge(package_name)
 
 end
 
-function add_dependencies()
+function add_dependencies(add_dev)
 
-    pth = fileparts(mfilename('fullpath'));
-    addpath(fullfile(pth, 'lib', 'bids-matlab'));
-    addpath(fullfile(pth, 'tests', 'utils'));
-    addpath(genpath(fullfile(pth, 'src')));
+    if add_dev
+        pth = fileparts(mfilename('fullpath'));
+        addpath(fullfile(pth, 'lib', 'bids-matlab'));
+        addpath(fullfile(pth, 'lib', 'JSONio'));
+    end
 
 end

docs/source/conf.py

@@ -1,4 +1,4 @@
-miss_hit==0.9.33
+miss_hit==0.9.35
 pre-commit
 jupyterlab
 octave_kernel

init_spm_2_bids.m

@@ -5,10 +5,15 @@
 if isdir(fullfile(thisDir, 'lib', 'bids-matlab'))
     addpath(fullfile(thisDir, 'lib', 'bids-matlab'));
 end
+if isdir(fullfile(thisDir, 'lib', 'JSONio'))
+    addpath(fullfile(thisDir, 'lib', 'JSONio'));
+end
 
 folderToCover = fullfile(thisDir, 'src');
 testFolder = fullfile(thisDir, 'tests');
 
+addpath(fullfile(testFolder, 'utils'));
+
 success = moxunit_runtests(testFolder, ...
                            '-verbose', '-recursive', '-with_coverage', ...
                            '-cover', folderToCover, ...