deal source for some wmean* images

Author: Remi-Gau

miss_hit.cfg

@@ -17,5 +17,5 @@ copyright_entity: "spm_2_bids developers"
 # metric for code quality
 metric "cnest": limit 5
 metric "file_length": limit 500
-metric "cyc": limit 13
-metric "parameters": limit 5
+metric "cyc": limit 16
+metric "parameters": limit 6

src/utils/identify_sources.m

@@ -60,7 +60,7 @@
 
     end
 
-    bf = bids.File(derivatives, 'verbose', verbose);
+    bf = bids.File(derivatives, 'verbose', verbose, 'use_schema', false);
 
     if prefix_based
         if numel(bf.prefix) < 2
@@ -82,6 +82,16 @@
             elseif startsWith(bf.prefix, 'rp_a')
                 bf.prefix = bf.prefix(4:end);
 
+            elseif startsWith(bf.prefix, 'mean')
+                % TODO mean may involve several files from the source (across runs
+                % and sessions
+                %     prefixes = {
+                %                 'mean'
+                %                 'meanu'
+                %                 'meanua'
+                %                };
+                return
+
             else
                 % no idea
                 return

tests/test_identify_sources.m

@@ -8,6 +8,26 @@
     initTestSuite;
 end
 
+function test_identify_sources_mean()
+
+    func_file = 'sub-01_task-auditory_bold.nii';
+
+    prefix_output = {
+                     'wmeanua', 'sub-01_task-auditory_space-individual_desc-mean_bold.nii'
+                     'wmeanu', 'sub-01_task-auditory_space-individual_desc-mean_bold.nii'
+                     'wmeanau', 'sub-01_task-auditory_space-individual_desc-mean_bold.nii'
+                    };
+
+    for i  = 1:size(prefix_output, 1)
+
+        sources = identify_sources([prefix_output{i, 1} func_file], [], false);
+
+        assertEqual(sources, fullfile('sub-01', prefix_output{i, 2}));
+
+    end
+
+end
+
 function test_identify_sources_anat()
 
     anat_file = 'sub-01_T1w.nii';
@@ -43,6 +63,7 @@ function test_identify_sources_func()
                      'swra', 'sub-01_task-auditory_space-IXI549Space_desc-preproc_bold.nii'
                      'sua', 'sub-01_task-auditory_space-individual_desc-realignUnwarp_bold.nii'
                      'su', 'sub-01_task-auditory_space-individual_desc-realignUnwarp_bold.nii'
+                     'su', 'sub-01_task-auditory_space-individual_desc-realignUnwarp_bold.nii'
                     };
 
     for i  = 1:size(prefix_output, 1)