rename identify rawsoureces

Author: Remi-Gau

src/utils/identify_rawsource.m renamed to src/utils/identify_rawsources.m

@@ -1,20 +1,28 @@
-function rawsource = identify_rawsource(derivatives, verbose)
-    %
+function rawsource = identify_rawsources(derivatives, verbose)
     %
+    % find the most likely files in the raw dataset
+    % that was used to create this derivatives
     %
     % USAGE::
     %
-    %   rawsource = identify_rawsource(derivatives)
+    %   rawsource = identify_rawsources(derivatives)
     %
     % :param file: SPM preprocessed filename (can be fullpath);
     %              for example ``wmsub-01_ses-01_T1w.nii``
     % :type file: string
     %
-    % :returns: - :new_filename: (string) BIDS compatible filename
-    %               for example ``sub-01_ses-01_space-IXI549Space_desc-preproc_T1w.nii``;
     %
     % (C) Copyright 2021 spm_2_bids developers
 
+    % TODO mean may involve several files from the source (across runs
+    % and sessions
+    %     prefixes = {
+    %                 'mean'
+    %                 'meanu'
+    %                 'meanua'
+    %                 'wmeanu'
+    %                };
+
     rawsource = '';
 
     if nargin < 1 || isempty(derivatives)
@@ -35,6 +43,6 @@
 
     bf.prefix = '';
 
-    rawsource = fullfile(bf.path, bf.bids_path, bf.filename);
+    rawsource = fullfile(bf.bids_path, bf.filename);
 
 end

tests/test_identify_rawsource.m renamed to tests/test_identify_rawsources.m

@@ -1,14 +1,14 @@
-% (C) Copyright 2021 spm_2_bids developers
+% (C) Copyright 2022 spm_2_bids developers
 
-function test_suite = test_identify_rawsource %#ok<*STOUT>
+function test_suite = test_identify_rawsources %#ok<*STOUT>
     try % assignment of 'localfunctions' is necessary in Matlab >= 2016
         test_functions = localfunctions(); %#ok<*NASGU>
     catch % no problem; early Matlab versions can use initTestSuite fine
     end
     initTestSuite;
 end
 
-function test_identify_rawsource_suffix()
+function test_identify_rawsources_suffix()
 
     input_output = {'sub-01_T1w_seg8.mat', 'sub-01_T1w.nii'
                     'sub-01_task-foo_bold_uw.mat', 'sub-01_task-foo_bold.nii'};
@@ -17,15 +17,15 @@ function test_identify_rawsource_suffix()
 
     for i = 1:size(input_output, 1)
 
-        rawsource = identify_rawsource(input_output{i, 1}, verbose);
+        rawsource = identify_rawsources(input_output{i, 1}, verbose);
 
         assertEqual(rawsource, ['sub-01/' input_output{i, 2}]);
 
     end
 
 end
 
-function test_identify_rawsource_anat()
+function test_identify_rawsources_anat()
 
     anat_file = 'sub-01_T1w.nii';
 
@@ -48,31 +48,27 @@ function test_identify_rawsource_anat()
 
         file = [prefixes{i} anat_file];
 
-        rawsource = identify_rawsource(file, verbose);
+        rawsource = identify_rawsources(fullfile(pwd, 'sub-01', file), verbose);
 
         assertEqual(rawsource, 'sub-01/sub-01_T1w.nii');
 
     end
 
 end
 
-function test_identify_rawsource_func()
+function test_identify_rawsources_func()
 
     func_file = 'sub-01_ses-02_task-foo_bold.nii';
 
     prefixes = {'a'
                 'u'
                 'rp_'
                 'rp_a'
-                'mean'
-                'meanu'
-                'meanua'
                 'w'
                 'wua'
                 'wu'
                 'wr'
                 'wra'
-                'wmeanu'
                 'sw'
                 'swua'
                 'swu'
@@ -91,7 +87,7 @@ function test_identify_rawsource_func()
 
         file = [prefixes{i} func_file];
 
-        rawsource = identify_rawsource(file, verbose);
+        rawsource = identify_rawsources(file, verbose);
 
         assertEqual(rawsource, 'sub-01/ses-02/sub-01_ses-02_task-foo_bold.nii');