add tests with matlab

Author: Remi-Gau

.github/workflows/run_tests.yml

@@ -4,7 +4,6 @@ on:
   push:
     branches:
       - master
-      - main
       - dev
 
   pull_request:
@@ -22,7 +21,7 @@ jobs:
         sudo apt-get -y install octave liboctave-dev
 
     - name: Clone spm_2_bids
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       with:
         submodules: true
         fetch-depth: 2
@@ -41,12 +40,6 @@ jobs:
         with_coverage: true
         cover_xml_file: coverage.xml
 
-    - name: Upload coverage
-      uses: actions/upload-artifact@v1
-      with:
-        name: coverage_file
-        path: coverage.xml
-
     - name: Code coverage
       uses: codecov/codecov-action@v1
       with:

.github/workflows/run_tests_matlab.yml

@@ -0,0 +1,58 @@
+name: tests and coverage with matlab
+
+on:
+
+  push:
+    branches:
+      - master
+      - dev
+
+  pull_request:
+    branches: ["*"]
+
+jobs:
+
+  build:
+
+    runs-on: ubuntu-20.04
+
+    steps:
+
+      - name: Install MATLAB
+        uses: matlab-actions/[email protected]
+        with:
+          # MATLAB release to set up R2020a
+          release: R2020a
+
+      - name: Install Moxunit and MOcov
+        run: |
+          git clone https://github.com/MOxUnit/MOxUnit.git --depth 1
+          git clone https://github.com/MOcov/MOcov.git --depth 1
+
+      - name: Clone spm_2_bids
+        uses: actions/checkout@v2
+        with:
+          submodules: true
+          fetch-depth: 2
+
+      - name: get bids-matlab and JSONio
+        run: |
+          make install_dev
+
+      - name: Run commands
+        uses: matlab-actions/[email protected]
+        with:
+          command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run tests_matlab;
+
+      - name: Run tests
+        run: |
+          cat test_report.log | grep 0
+          bash <(curl -s https://codecov.io/bash)
+
+      - name: Code coverage
+        uses: codecov/codecov-action@v1
+        with:
+          file: coverage.xml # optional
+          flags: unittests # optional
+          name: codecov-umbrella # optional
+          fail_ci_if_error: true # optional (default = false)

.github/workflows/tests_matlab.m

@@ -0,0 +1,15 @@
+%
+% (C) Copyright 2022 spm_2_bids developers
+
+root_dir = getenv('GITHUB_WORKSPACE');
+
+addpath(fullfile(root_dir, 'MOcov', 'MOcov'));
+
+cd(fullfile(root_dir, 'MOxUnit', 'MOxUnit'));
+run moxunit_set_path();
+
+cd(root_dir);
+init_spm_2_bids();
+
+cd(root_dir);
+run run_tests();

run_tests.m

@@ -3,8 +3,7 @@
 folderToCover = fullfile(pwd, 'src');
 testFolder = fullfile(pwd, 'tests');
 
-success = moxunit_runtests( ...
-                           testFolder, ...
+success = moxunit_runtests(testFolder, ...
                            '-verbose', '-recursive', '-with_coverage', ...
                            '-cover', folderToCover, ...
                            '-cover_xml_file', 'coverage.xml', ...