update github action

Author: Remi-Gau

.github/workflows/run_tests.yml

@@ -6,38 +6,36 @@ on:
       - master
       - main
       - dev
+
   pull_request:
     branches: '*'
 
 jobs:
   build:
-
     runs-on: ubuntu-20.04
 
     steps:
 
+    - name: Install dependencies
+      run: |
+        sudo apt-get -y -qq update
+        sudo apt-get -y install octave liboctave-dev    
+
     - name: Clone spm_2_bids         
       uses: actions/checkout@v2
       with:
         submodules: true
-        fetch-depth: 2  
-
-    - name: Install JSONio
-      run: |
-         git clone git://github.com/gllmflndn/JSONio.git --depth 1
-         cd JSONio
-         mkoctfile --mex jsonread.c jsmn.c -DJSMN_PARENT_LINKS
-         cd ..        
+        fetch-depth: 2        
 
-    - name: get bids-matlab and set up paths
+    - name: get bids-matlab and JSONio
       run: |
-        make install_dev
+        make install_dev_octave
 
     - name: MOxUnit Action
       uses: joergbrech/moxunit-action@master
       with:
         tests: tests # files or directories containing the MOxUnit test cases
-        src: src lib/bids-matlab  # directories to be added to the Octave search path before running the tests. 
+        src: src lib/bids-matlab lib/JSONio # directories to be added to path before running the tests. 
         ext: tests/utils # External resources to add to the search put (excluded from coverage)
         # data: # Directory for test data  
         with_coverage: true

.gitignore

@@ -6,13 +6,12 @@
 env/
 
 lib/bids-matlab
+lib/JSONio
 
 coverage_html
 coverage.xml
 test_report.log
 
-
-
 ## MATLAB / OCTAVE gitignore template
 
 # From : https://github.com/github/gitignore/blob/master/Global/MATLAB.gitignore

Makefile

@@ -1,6 +1,14 @@
 install_dev:
 	git clone https://github.com/bids-standard/bids-matlab.git lib/bids-matlab
 	cd lib/bids-matlab && git checkout dev
+	git clone git://github.com/gllmflndn/JSONio.git --depth 1 lib/JSONio
+
+install_dev_octave:
+	git clone https://github.com/bids-standard/bids-matlab.git lib/bids-matlab
+	cd lib/bids-matlab && git checkout dev
+	git clone git://github.com/gllmflndn/JSONio.git --depth 1 lib/JSONio
+	cd lib/JSONio && mkoctfile --mex jsonread.c jsmn.c -DJSMN_PARENT_LINKS
 
 clean:
-	rm -rf lib/bids-matlab
+	rm -rf lib/bids-matlab
+	rm -rf lib/JSONio