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TomasKulhanekTomasKulhanek
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ADD lymph related components
1 parent b9e793b commit 536a95c

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13 files changed

+90
-4
lines changed

13 files changed

+90
-4
lines changed

‎Pharmacolibrary/Interfaces/FlowPort_a.mo‎

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@@ -2,8 +2,8 @@ within Pharmacolibrary.Interfaces;
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connector FlowPort_a
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extends Pharmacolibrary.Interfaces.FlowPort;
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annotation(
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defaultComponentName = "fport_in",
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Icon(coordinateSystem(initialScale = 0.1), graphics = {Polygon(lineColor = {204, 0, 0}, fillColor = {255, 255, 255}, fillPattern = FillPattern.Solid, lineThickness = 0.5, points = {{-100, 0}, {0, 100}, {100, 0}, {0, -100}, {-100, 0}})}),
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defaultComponentName = "fin",
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Icon(coordinateSystem(initialScale = 0.1), graphics = {Polygon(lineColor = {204, 0, 0}, fillColor = {255, 255, 255}, fillPattern = FillPattern.Solid, lineThickness = 4, points = {{-100, 0}, {0, 100}, {100, 0}, {0, -100}, {-100, 0}})}),
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Diagram(coordinateSystem(initialScale = 0.1)),
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Documentation(info = "<html><head></head><body><span style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">The external&nbsp;</span><code style=\"font-size: 12px;\">FlowPort</code><span style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">&nbsp;connector defines an acausal interface for&nbsp;</span><span style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">usual output&nbsp;</span><span style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">transporting both fluid volume and dissolved substance (drug) concentration between components.</span><div style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\"></div><div><span style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\"><br></span></div></body></html>"));
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end FlowPort_a;

‎Pharmacolibrary/Interfaces/FlowPort_b.mo‎

Lines changed: 1 addition & 1 deletion
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@@ -2,7 +2,7 @@ within Pharmacolibrary.Interfaces;
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connector FlowPort_b
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extends Pharmacolibrary.Interfaces.FlowPort;
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annotation(
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defaultComponentName = "fport_in",
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defaultComponentName = "fout",
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Icon(coordinateSystem(initialScale = 0.1), graphics = {Polygon(lineColor = {204, 0, 0}, fillColor = {204, 0, 0}, fillPattern = FillPattern.Solid, lineThickness = 0.5, points = {{-100, 0}, {0, 100}, {100, 0}, {0, -100}, {-100, 0}})}),
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Diagram(coordinateSystem(initialScale = 0.1)),
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Documentation(info = "<html><head></head><body><span style=\"font-size: 12px; font-family: 'DejaVu Sans Mono';\">The internal&nbsp;</span><code style=\"font-size: 12px;\">FlowPort</code><span style=\"font-size: 12px; font-family: 'DejaVu Sans Mono';\">&nbsp;connector defines an acausal interface for&nbsp;</span><span style=\"font-size: 12px; font-family: 'DejaVu Sans Mono';\">usual input&nbsp;</span><span style=\"font-size: 12px; font-family: 'DejaVu Sans Mono';\">transporting both fluid volume and dissolved substance (drug) concentration between components.</span></body></html>"));

‎Pharmacolibrary/Interfaces/FlowPort_la.mo‎

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@@ -0,0 +1,7 @@
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within Pharmacolibrary.Interfaces;
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connector FlowPort_la
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extends Pharmacolibrary.Interfaces.FlowPort;
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annotation(
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Icon(graphics = {Polygon(lineColor = {46, 194, 126}, fillColor = {255, 255, 255}, fillPattern = FillPattern.Solid, lineThickness = 4, points = {{-100, 0}, {0, 100}, {100, 0}, {0, -100}, {-100, 0}})}));
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end FlowPort_la;

‎Pharmacolibrary/Interfaces/FlowPort_lb.mo‎

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within Pharmacolibrary.Interfaces;
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connector FlowPort_lb
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extends Interfaces.FlowPort;
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annotation(
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Icon(graphics = {Polygon(lineColor = {46, 194, 126}, fillColor = {46, 194, 126}, fillPattern = FillPattern.Solid, lineThickness = 4, points = {{-100, 0}, {0, 100}, {100, 0}, {0, -100}, {-100, 0}})}));
7+
end FlowPort_lb;

‎Pharmacolibrary/Interfaces/PartialLymphConcThrough.mo‎

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within Pharmacolibrary.Interfaces;
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partial model PartialLymphConcThrough
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extends Interfaces.PartialLymphTwoPort;
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equation
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port_a.c = inStream(port_b.c);
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inStream(port_a.c) = port_b.c;
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annotation(
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Documentation(info = "<html><head></head><body><p style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">This partial model defines an interface for components with two flow ports where concentration strem is ideal and goes through this component without any other effect. Proper drug mixing is ensured.</p><p style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">An extending model providing direct access to mass flow and mass concentration of the port should define appropriate relation.&nbsp;</p></body></html>"));
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end PartialLymphConcThrough;

‎Pharmacolibrary/Interfaces/PartialLymphFlowThrough.mo‎

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within Pharmacolibrary.Interfaces;
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partial model PartialLymphFlowThrough
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extends Interfaces.PartialLymphTwoPort;
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equation
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port_a.qv + port_b.qv = 0;
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port_a.p = port_b.p;
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annotation(
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Documentation(info = "<html><head></head><body><p style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">This partial model defines an interface for components with two flow ports where volumetric flow is ideal through this component without any other effect.&nbsp;</p><p style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">An extending model providing direct access to mass flow and mass concentration of the port should define appropriate relation.&nbsp;</p></body></html>"));
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end PartialLymphFlowThrough;

‎Pharmacolibrary/Interfaces/PartialLymphTwoPort.mo‎

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within Pharmacolibrary.Interfaces;
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partial model PartialLymphTwoPort
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Interfaces.FlowPort_la port_a annotation(
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Placement(transformation(origin = {-94, 0}, extent = {{-10, -10}, {10, 10}}), iconTransformation(origin = {-100, 0}, extent = {{-30, -30}, {30, 30}})));
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Interfaces.FlowPort_lb port_b annotation(
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Placement(transformation(origin = {96, 0}, extent = {{-10, -10}, {10, 10}}), iconTransformation(origin = {100, 0}, extent = {{-30, -30}, {30, 30}})));
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annotation(
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Documentation(info = "<html><head></head><body><p style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">This partial model defines an interface for components with two flow ports.&nbsp;</p><p style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">An extending model providing direct access to flow and concentration of both ports should define appropriate relation.</p></body></html>"));
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end PartialLymphTwoPort;

‎Pharmacolibrary/Interfaces/package.order‎

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Original file line numberDiff line numberDiff line change
@@ -24,3 +24,8 @@ PharmaBus
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PartialOneConcPort_obsolete
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PartialBloodTissueCompartment
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PartialBTCompartment
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FlowPort_la
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FlowPort_lb
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PartialLymphTwoPort
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PartialLymphConcThrough
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PartialLymphFlowThrough

‎Pharmacolibrary/Pharmacokinetic/LymphFlow.mo‎

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within Pharmacolibrary.Pharmacokinetic;
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model LymphFlow
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extends Interfaces.PartialLymphConcThrough;
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extends Interfaces.PartialLymphTwoPort;
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parameter Types.VolumeFlowRate Q(displayUnit = "l/min") "fixed flow rate";
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equation
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assert(abs(port_a.qv + port_b.qv) < Modelica.Constants.eps, "some flow is lost", level = AssertionLevel.error);
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port_a.qv = Q;
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port_a.qv + port_b.qv = 0;
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// port_a.p = 1;
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annotation(
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Icon(graphics = {Polygon(rotation = 180, lineColor = {38, 162, 105}, fillColor = {143, 240, 164}, fillPattern = FillPattern.Solid, lineThickness = 4, points = {{-80, 0}, {80, 40}, {80, -40}, {-80, 0}, {-80, 0}}), Text(origin = {0, -59}, extent = {{260, -11}, {-260, 11}}, textString = "Q=%Q")}, coordinateSystem(initialScale = 0.1)),
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Documentation(info = "<html><head></head><body><h1>FixedFlow</h1><div><span style=\"font-family: 'DejaVu Sans Mono'; font-size: 12px;\">determines the blood/plasma flow. The flow (perfusion) part of a model should be supplied with appropriet number of FixedFlow components so that the flow in each branch may be determined.</span></div><h2>Parameter</h2><div><font face=\"DejaVu Sans Mono\">Q - fixed flow rate</font></div></body></html>"));
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end LymphFlow;

‎Pharmacolibrary/Pharmacokinetic/LymphNode.mo‎

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within Pharmacolibrary.Pharmacokinetic;
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model LymphNode "Lymph node compartment"
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extends Pharmacokinetic.GenericTissueCompartment(final kTB = 1, redeclare Pharmacolibrary.Interfaces.FlowPort_lb port_b);
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extends Icons.BloodPlasma;
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equation
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annotation(
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defaultComponentName = "systemic",
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Icon,
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Documentation(info = "<html><head></head><body>
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<h1>SystemicCompartment</h1><div>Systemic compartment is same as TissueCompartment, but the kTB is always 1, so that the concentration in tissue is not considered and is always same as blood/plasma concentration.</div></body></html>"));
12+
end LymphNode;

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