adjusts input file paths

skafdasschaf · skafdasschaf · commit 3c7d68aa12f8 · 2023-03-09T15:31:18.000+01:00
diff --git a/scatac/monocle_to_anndata.R b/scatac/monocle_to_anndata.R
@@ -1,10 +1,10 @@
 
 nb_rna <- 
   readRDS(
-    file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/rna_decontaminated.rds")
+    file = "data_generated/rna_decontaminated.rds")
 nb_rna_meta <- 
   readRDS(
-    file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/metadata.rds")
+    file = "data_generated/metadata.rds")
 
 # rna_integrated_monocle.rds
 # sce <- SingleCellExperiment(list(counts=counts))
