Merge pull request #85 from csiro-coasts/ugrid-masked-arrays

Fix numpy warnings about casting unsafe values

Author: mx-moth

continuous-integration/requirements.txt

@@ -1,223 +1,199 @@
 #
-# This file is autogenerated by pip-compile with python 3.10
-# To update, run:
+# This file is autogenerated by pip-compile with Python 3.10
+# by the following command:
 #
 #    pip-compile --extra=testing --output-file=continuous-integration/requirements.txt setup.cfg
 #
-alabaster==0.7.12
+alabaster==0.7.13
     # via sphinx
-appdirs==1.4.4
-    # via pooch
-attrs==22.1.0
-    # via pytest
-babel==2.10.3
+babel==2.12.1
     # via sphinx
-beautifulsoup4==4.11.1
+beautifulsoup4==4.12.2
     # via pydata-sphinx-theme
-bokeh==2.4.3
-    # via dask
-bottleneck==1.3.5
+bottleneck==1.3.7
     # via emsarray (setup.cfg)
+cachetools==5.3.0
+    # via tox
 cartopy==0.21.1
     # via emsarray (setup.cfg)
-certifi==2022.9.24
+certifi==2023.5.7
     # via
     #   pyproj
     #   requests
 cftime==1.6.2
     # via netcdf4
-charset-normalizer==2.1.1
+chardet==5.1.0
+    # via tox
+charset-normalizer==3.1.0
     # via requests
 click==8.1.3
-    # via distributed
-cloudpickle==2.2.0
-    # via
-    #   dask
-    #   distributed
-contourpy==1.0.5
+    # via dask
+cloudpickle==2.2.1
+    # via dask
+colorama==0.4.6
+    # via tox
+contourpy==1.0.7
     # via matplotlib
-coverage[toml]==6.4.4
+coverage[toml]==7.2.5
     # via pytest-cov
 cycler==0.11.0
     # via matplotlib
-dask[complete]==2022.9.1
-    # via
-    #   distributed
-    #   xarray
+dask[complete]==2023.4.1
+    # via xarray
 distlib==0.3.6
     # via virtualenv
-distributed==2022.9.1
-    # via dask
 docutils==0.17.1
     # via
     #   pydata-sphinx-theme
     #   sphinx
-filelock==3.8.0
+exceptiongroup==1.1.1
+    # via pytest
+filelock==3.12.0
     # via
     #   tox
     #   virtualenv
-flake8==5.0.4
+flake8==6.0.0
     # via emsarray (setup.cfg)
-fonttools==4.37.3
+fonttools==4.39.4
     # via matplotlib
-fsspec==2022.8.2
+fsspec==2023.5.0
     # via dask
-geojson==2.5.0
+geojson==3.0.1
     # via emsarray (setup.cfg)
-heapdict==1.0.1
-    # via zict
 idna==3.4
     # via requests
 imagesize==1.4.1
     # via sphinx
-importlib-metadata==4.12.0
-    # via emsarray (setup.cfg)
-iniconfig==1.1.1
+importlib-metadata==6.6.0
+    # via
+    #   dask
+    #   emsarray (setup.cfg)
+iniconfig==2.0.0
     # via pytest
-isort==5.10.1
+isort==5.12.0
     # via emsarray (setup.cfg)
 jinja2==3.1.2
-    # via
-    #   bokeh
-    #   dask
-    #   distributed
-    #   sphinx
+    # via sphinx
 kiwisolver==1.4.4
     # via matplotlib
 livereload==2.6.3
     # via emsarray (setup.cfg)
 locket==1.0.0
-    # via
-    #   distributed
-    #   partd
-markupsafe==2.1.1
+    # via partd
+lz4==4.3.2
+    # via dask
+markupsafe==2.1.2
     # via jinja2
-matplotlib==3.6.0
+matplotlib==3.7.1
     # via
     #   cartopy
     #   emsarray (setup.cfg)
 mccabe==0.7.0
     # via flake8
-msgpack==1.0.4
-    # via distributed
-mypy==0.981
+mypy==1.3.0
     # via emsarray (setup.cfg)
-mypy-extensions==0.4.3
+mypy-extensions==1.0.0
     # via mypy
-netcdf4==1.6.1
+netcdf4==1.6.3
     # via emsarray (setup.cfg)
-numpy==1.23.3
+numpy==1.24.3
     # via
-    #   bokeh
     #   bottleneck
     #   cartopy
     #   cftime
     #   contourpy
-    #   dask
     #   emsarray (setup.cfg)
     #   matplotlib
     #   netcdf4
     #   pandas
+    #   pyarrow
     #   pykdtree
     #   shapely
     #   xarray
-packaging==21.3
+packaging==23.1
     # via
-    #   bokeh
     #   dask
-    #   distributed
     #   emsarray (setup.cfg)
     #   matplotlib
     #   pooch
     #   pydata-sphinx-theme
+    #   pyproject-api
     #   pytest
     #   sphinx
     #   tox
     #   xarray
-pandas==1.5.0
-    # via
-    #   dask
-    #   xarray
-pandas-stubs==1.5.2.221213
+pandas==2.0.1
+    # via xarray
+pandas-stubs==2.0.1.230501
     # via emsarray (setup.cfg)
-partd==1.3.0
+partd==1.4.0
     # via dask
-pillow==9.2.0
+pillow==9.5.0
+    # via matplotlib
+platformdirs==3.5.0
     # via
-    #   bokeh
-    #   matplotlib
-platformdirs==2.5.2
-    # via virtualenv
+    #   pooch
+    #   tox
+    #   virtualenv
 pluggy==1.0.0
     # via
     #   pytest
     #   tox
-pooch==1.6.0
+pooch==1.7.0
     # via emsarray (setup.cfg)
-psutil==5.9.2
-    # via distributed
-py==1.11.0
-    # via
-    #   pytest
-    #   tox
-pycodestyle==2.9.1
+pyarrow==12.0.0
+    # via dask
+pycodestyle==2.10.0
     # via flake8
 pydata-sphinx-theme==0.8.1
     # via sphinx-book-theme
-pyflakes==2.5.0
+pyflakes==3.0.1
     # via flake8
-pygments==2.13.0
+pygments==2.15.1
     # via sphinx
-pykdtree==1.3.6
+pykdtree==1.3.7.post0
     # via emsarray (setup.cfg)
 pyparsing==3.0.9
-    # via
-    #   matplotlib
-    #   packaging
-pyproj==3.4.0
+    # via matplotlib
+pyproj==3.5.0
     # via cartopy
+pyproject-api==1.5.1
+    # via tox
 pyshp==2.3.1
     # via
     #   cartopy
     #   emsarray (setup.cfg)
-pytest==7.1.3
+pytest==7.3.1
     # via
     #   emsarray (setup.cfg)
     #   pytest-cov
-pytest-cov==3.0.0
+pytest-cov==4.0.0
     # via emsarray (setup.cfg)
 python-dateutil==2.8.2
     # via
     #   matplotlib
     #   pandas
-pytz==2022.2.1
-    # via
-    #   babel
-    #   pandas
+pytz==2023.3
+    # via pandas
 pyyaml==6.0
     # via
-    #   bokeh
     #   dask
-    #   distributed
     #   sphinx-book-theme
-requests==2.28.1
+requests==2.30.0
     # via
     #   pooch
     #   sphinx
-shapely==2.0.0
+shapely==2.0.1
     # via
     #   cartopy
     #   emsarray (setup.cfg)
 six==1.16.0
     # via
     #   livereload
     #   python-dateutil
-    #   tox
 snowballstemmer==2.2.0
     # via sphinx
-sortedcontainers==2.4.0
-    # via distributed
-soupsieve==2.3.2.post1
+soupsieve==2.4.1
     # via beautifulsoup4
 sphinx==4.3.2
     # via
@@ -226,57 +202,48 @@ sphinx==4.3.2
     #   sphinx-book-theme
 sphinx-book-theme==0.3.3
     # via emsarray (setup.cfg)
-sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-applehelp==1.0.4
     # via sphinx
 sphinxcontrib-devhelp==1.0.2
     # via sphinx
-sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-htmlhelp==2.0.1
     # via sphinx
 sphinxcontrib-jsmath==1.0.1
     # via sphinx
 sphinxcontrib-qthelp==1.0.3
     # via sphinx
 sphinxcontrib-serializinghtml==1.1.5
     # via sphinx
-tblib==1.7.0
-    # via distributed
 tomli==2.0.1
     # via
     #   coverage
     #   mypy
+    #   pyproject-api
     #   pytest
     #   tox
 toolz==0.12.0
     # via
     #   dask
-    #   distributed
     #   partd
-tornado==6.1
-    # via
-    #   bokeh
-    #   distributed
-    #   livereload
-tox==3.26.0
+tornado==6.3.1
+    # via livereload
+tox==4.5.1
     # via emsarray (setup.cfg)
-types-pytz==2022.2.1.0
+types-pytz==2023.3.0.0
     # via
     #   emsarray (setup.cfg)
     #   pandas-stubs
-typing-extensions==4.3.0
-    # via
-    #   bokeh
-    #   mypy
-urllib3==1.26.12
-    # via
-    #   distributed
-    #   requests
-virtualenv==20.16.5
+typing-extensions==4.5.0
+    # via mypy
+tzdata==2023.3
+    # via pandas
+urllib3==2.0.2
+    # via requests
+virtualenv==20.23.0
     # via tox
-xarray[parallel]==2022.6.0
+xarray[parallel]==2023.1.0
     # via emsarray (setup.cfg)
-zict==2.2.0
-    # via distributed
-zipp==3.8.1
+zipp==3.15.0
     # via importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file:

docs/releases/development.rst

@@ -10,3 +10,4 @@ Next release (in development)
   (:pr:`77`).
 * Added :func:`emsarray.utils.timed_func` for easily logging some performance metrics (:pr:`79`).
 * Add :attr:`.Convention.bounds` and :attr:`.Convention.geometry` attributes (:pr:`83`).
+* Fix a number of numpy warnings about unsafe casts (:pr:`85`).