Merge pull request #169 from csiro-coasts/python3.13

Bump minimum versions of dependencies

Author: mx-moth

.github/workflows/ci.yaml

@@ -12,7 +12,7 @@ on:
   workflow_dispatch:
 
 env:
-  python-version: "3.12"
+  python-version: "3.13"
 
 jobs:
   build:
@@ -65,12 +65,12 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12", "3.13"]
         dependencies: ["pinned"]
         include:
-          - python-version: "3.12"
+          - python-version: "3.13"
             dependencies: "latest"
-          - python-version: "3.10"
+          - python-version: "3.11"
             dependencies: "minimum"
 
 
@@ -135,7 +135,7 @@ jobs:
         uses: actions/cache@v3
         with:
           path: '.mypy_cache'
-          key: mypy-${{ runner.os }}-py${{ env.python-version }}-${{ hashFiles('requirements.txt') }}
+          key: mypy-${{ runner.os }}-py${{ env.python-version }}-${{ hashFiles(format('continuous-integration/requirements-{0}.txt', env.python-version)) }}
 
       - run: flake8 src/ tests/
       - run: isort --diff --check-only src/ tests/

continuous-integration/requirements-3.11.txt

@@ -2,100 +2,103 @@
 # This file is autogenerated by pip-compile with Python 3.11
 # by the following command:
 #
-#    pip-compile --extra=testing --output-file=./continuous-integration/requirements-3.11.txt setup.cfg
+#    pip-compile --extra=testing --output-file=./continuous-integration/requirements-3.11.txt --unsafe-package=emsarray pyproject.toml
 #
-bokeh==3.4.2
+bokeh==3.6.2
     # via dask
-bottleneck==1.4.0
-    # via emsarray (setup.cfg)
-cartopy==0.23.0
-    # via emsarray (setup.cfg)
-certifi==2024.6.2
+bottleneck==1.4.2
+    # via
+    #   emsarray
+    #   emsarray (pyproject.toml)
+cartopy==0.24.1
+    # via emsarray
+certifi==2024.12.14
     # via
     #   netcdf4
     #   pyproj
     #   requests
-cftime==1.6.4
+cftime==1.6.4.post1
     # via
     #   cfunits
     #   netcdf4
 cfunits==3.3.7
-    # via emsarray (setup.cfg)
-charset-normalizer==3.3.2
+    # via emsarray
+charset-normalizer==3.4.1
     # via requests
-click==8.1.7
+click==8.1.8
     # via
     #   dask
     #   distributed
-cloudpickle==3.0.0
+cloudpickle==3.1.1
     # via
     #   dask
     #   distributed
-contourpy==1.2.1
+contourpy==1.3.1
     # via
     #   bokeh
     #   matplotlib
-coverage[toml]==7.5.4
+coverage[toml]==7.6.10
     # via pytest-cov
 cycler==0.12.1
     # via matplotlib
-dask[array,complete,dataframe,diagnostics,distributed]==2024.6.2
+dask[array,complete,dataframe,diagnostics,distributed]==2025.1.0
     # via
-    #   dask-expr
     #   distributed
     #   xarray
-dask-expr==1.1.6
-    # via dask
-distributed==2024.6.2
+distributed==2025.1.0
     # via dask
-flake8==7.1.0
-    # via emsarray (setup.cfg)
-fonttools==4.53.0
+flake8==7.1.1
+    # via emsarray (pyproject.toml)
+fonttools==4.55.4
     # via matplotlib
-fsspec==2024.6.1
+fsspec==2024.12.0
     # via dask
-geojson==3.1.0
-    # via emsarray (setup.cfg)
-idna==3.7
+geojson==3.2.0
+    # via
+    #   emsarray
+    #   emsarray (pyproject.toml)
+idna==3.10
     # via requests
-importlib-metadata==8.0.0
+importlib-metadata==8.6.1
     # via dask
 iniconfig==2.0.0
     # via pytest
 isort==5.13.2
-    # via emsarray (setup.cfg)
-jinja2==3.1.4
+    # via emsarray (pyproject.toml)
+jinja2==3.1.5
     # via
     #   bokeh
     #   dask
     #   distributed
     #   pytest-mpl
-kiwisolver==1.4.5
+kiwisolver==1.4.8
     # via matplotlib
 locket==1.0.0
     # via
     #   distributed
     #   partd
 lz4==4.3.3
     # via dask
-markupsafe==2.1.5
+markupsafe==3.0.2
     # via jinja2
-matplotlib==3.9.0
+matplotlib==3.10.0
     # via
     #   cartopy
-    #   emsarray (setup.cfg)
+    #   emsarray
     #   pytest-mpl
 mccabe==0.7.0
     # via flake8
-msgpack==1.0.8
+msgpack==1.1.0
     # via distributed
-mypy==1.10.1
-    # via emsarray (setup.cfg)
+mypy==1.14.1
+    # via emsarray (pyproject.toml)
 mypy-extensions==1.0.0
     # via mypy
-netcdf4==1.7.1.post1
-    # via emsarray (setup.cfg)
-numpy==2.0.0
+netcdf4==1.7.2
+    # via
+    #   emsarray
+    #   emsarray (pyproject.toml)
+numpy==2.2.2
     # via
     #   bokeh
     #   bottleneck
@@ -104,129 +107,132 @@ numpy==2.0.0
     #   cfunits
     #   contourpy
     #   dask
-    #   emsarray (setup.cfg)
+    #   emsarray
+    #   emsarray (pyproject.toml)
     #   matplotlib
     #   netcdf4
     #   pandas
     #   pandas-stubs
-    #   pyarrow
     #   pykdtree
     #   shapely
     #   xarray
-packaging==24.1
+packaging==24.2
     # via
     #   bokeh
     #   cartopy
     #   cfunits
     #   dask
     #   distributed
-    #   emsarray (setup.cfg)
+    #   emsarray
+    #   emsarray (pyproject.toml)
     #   matplotlib
     #   pooch
     #   pytest
     #   pytest-mpl
     #   xarray
-pandas==2.2.2
+pandas==2.2.3
     # via
     #   bokeh
     #   dask
-    #   dask-expr
     #   xarray
-pandas-stubs==2.2.2.240603
-    # via emsarray (setup.cfg)
+pandas-stubs==2.2.3.241126
+    # via emsarray (pyproject.toml)
 partd==1.4.2
     # via dask
-pillow==10.4.0
+pillow==11.1.0
     # via
     #   bokeh
     #   matplotlib
     #   pytest-mpl
-platformdirs==4.2.2
+platformdirs==4.3.6
     # via pooch
 pluggy==1.5.0
     # via pytest
 pooch==1.8.2
-    # via emsarray (setup.cfg)
-psutil==6.0.0
+    # via emsarray
+psutil==6.1.1
     # via distributed
-pyarrow==16.1.0
-    # via
-    #   dask
-    #   dask-expr
-pyarrow-hotfix==0.6
+pyarrow==19.0.0
     # via dask
-pycodestyle==2.12.0
+pycodestyle==2.12.1
     # via flake8
 pyflakes==3.2.0
     # via flake8
-pykdtree==1.3.12
-    # via emsarray (setup.cfg)
-pyparsing==3.1.2
+pykdtree==1.3.13
+    # via emsarray
+pyparsing==3.2.1
     # via matplotlib
-pyproj==3.6.1
+pyproj==3.7.0
     # via cartopy
 pyshp==2.3.1
     # via
     #   cartopy
-    #   emsarray (setup.cfg)
-pytest==8.2.2
+    #   emsarray
+    #   emsarray (pyproject.toml)
+pytest==8.3.4
     # via
-    #   emsarray (setup.cfg)
+    #   emsarray (pyproject.toml)
     #   pytest-cov
     #   pytest-mpl
-pytest-cov==5.0.0
-    # via emsarray (setup.cfg)
+pytest-cov==6.0.0
+    # via emsarray (pyproject.toml)
 pytest-mpl==0.17.0
-    # via emsarray (setup.cfg)
+    # via emsarray (pyproject.toml)
 python-dateutil==2.9.0.post0
     # via
     #   matplotlib
     #   pandas
-pytz==2024.1
+pytz==2024.2
     # via pandas
-pyyaml==6.0.1
+pyyaml==6.0.2
     # via
     #   bokeh
     #   dask
     #   distributed
 requests==2.32.3
     # via pooch
-shapely==2.0.4
+shapely==2.0.6
     # via
     #   cartopy
-    #   emsarray (setup.cfg)
-six==1.16.0
+    #   emsarray
+    #   emsarray (pyproject.toml)
+six==1.17.0
     # via python-dateutil
 sortedcontainers==2.4.0
     # via distributed
 tblib==3.0.0
     # via distributed
-toolz==0.12.1
+toolz==1.0.0
     # via
     #   dask
     #   distributed
     #   partd
-tornado==6.4.1
+tornado==6.4.2
     # via
     #   bokeh
     #   distributed
-types-pytz==2024.1.0.20240417
+types-pytz==2024.2.0.20241221
     # via
-    #   emsarray (setup.cfg)
+    #   emsarray (pyproject.toml)
     #   pandas-stubs
 typing-extensions==4.12.2
     # via mypy
-tzdata==2024.1
+tzdata==2025.1
     # via pandas
-urllib3==2.2.2
+urllib3==2.3.0
     # via
     #   distributed
     #   requests
-xarray[parallel]==2024.6.0
-    # via emsarray (setup.cfg)
-xyzservices==2024.6.0
+xarray[parallel]==2025.1.1
+    # via
+    #   emsarray
+    #   emsarray (pyproject.toml)
+xyzservices==2025.1.0
     # via bokeh
 zict==3.0.0
     # via distributed
-zipp==3.19.2
+zipp==3.21.0
     # via importlib-metadata
+
+# The following packages are considered to be unsafe in a requirements file:
+# emsarray