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update version numbers
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README.md

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crass -- CRisprASSembler -- version 0 subversion 3 revision 11 (0.3.11)
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crass -- CRisprASSembler -- version 0 subversion 3 revision 12 (0.3.12)
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=======================================================================
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CITATION

configure.ac

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# Process this file with autoconf to produce a configure script.
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AC_PREREQ(2.61)
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AC_INIT(crass, 0.3.11, c.skennerton@gmail.com)
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AC_INIT(crass, 0.3.12, c.skennerton@gmail.com)
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AC_CONFIG_AUX_DIR(build)
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AC_CONFIG_MACRO_DIR([m4])
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AC_DEFINE([PACKAGE_FULL_NAME],["CRisprASSembler"],[Define the full name of the package])
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AC_DEFINE([PACKAGE_MAJOR_VERSION],[0],[Define the major version of the package])
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AC_DEFINE([PACKAGE_MINOR_VERSION],[3],[Define the minor version of the package])
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AC_DEFINE([PACKAGE_REVISION],[10],[Define the revision of the package])
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AC_DEFINE([PACKAGE_REVISION],[12],[Define the revision of the package])
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# extra configure options

doc/manual.tex

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%%% The "real" document content comes below...
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\title{Crass: The CRISPR assembler (v0.3.11)}
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\title{Crass: The CRISPR assembler (v0.3.12)}
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\author{Connor Skennerton and Michael Imelfort}
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\date{7th February 2015} % Activate to display a given date or no date (if empty),
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\date{10th February 2015} % Activate to display a given date or no date (if empty),
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% otherwise the current date is printed
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\begin{document}

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