Update Publications from Google Scholar #7
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| name: Update Publications from Google Scholar | |
| on: | |
| push: | |
| branches: [ master ] | |
| workflow_dispatch: # Manual trigger | |
| schedule: | |
| - cron: '0 6 * * 1' # Weekly on Monday 6AM UTC | |
| jobs: | |
| update-publications: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dependencies | |
| run: | | |
| pip install scholarly requests beautifulsoup4 | |
| - name: Update publications | |
| run: | | |
| python3 - <<'EOF' | |
| import json | |
| import requests | |
| from datetime import datetime | |
| # Your current publications (fallback) | |
| publications = [ | |
| { | |
| "title": "TxPert: Leveraging Biochemical Relationships for Out-of-Distribution Perturbation Prediction", | |
| "authors": "Russell, C.T., et al.", | |
| "year": 2025, | |
| "venue": "arXiv preprint", | |
| "link": "https://arxiv.org/abs/2505.14919", | |
| "doi": None, | |
| "citations": 0 | |
| }, | |
| { | |
| "title": "DL4MicEverywhere: Deep learning for microscopy made flexible, shareable and reproducible", | |
| "authors": "Gómez-de-Mariscal, E., Russell, C.T., et al.", | |
| "year": 2024, | |
| "venue": "Nature Methods", | |
| "link": "https://doi.org/10.1038/s41592-024-02295-6", | |
| "doi": "10.1038/s41592-024-02295-6", | |
| "citations": 12 | |
| } | |
| # Add more publications as needed | |
| ] | |
| # TODO: Add Scholar API integration here when needed | |
| # For now, just update the timestamp | |
| data = { | |
| "lastUpdated": datetime.now().strftime("%Y-%m-%d"), | |
| "publications": publications | |
| } | |
| with open('assets/data/publications.json', 'w') as f: | |
| json.dump(data, f, indent=2) | |
| print("Publications updated successfully") | |
| EOF | |
| - name: Commit changes | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add assets/data/publications.json | |
| git diff --staged --quiet || git commit -m "[auto] Update publications data" | |
| - name: Push changes | |
| if: github.ref == 'refs/heads/master' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: master |