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fixed the missing required arguments
1 parent 33c8fc5 commit cfc93c3

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2 files changed

+5
-7
lines changed

2 files changed

+5
-7
lines changed

src/cehrbert/data_generators/hf_data_generator/hf_dataset_mapping.py

Lines changed: 4 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -345,13 +345,10 @@ def transform(self, record: Dict[str, Any]) -> Dict[str, Any]:
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year_str = f"year:{str(first_visit_start_datetime.year)}"
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age_str = f"age:{str(relativedelta(first_visit_start_datetime, birth_datetime).years)}"
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348-
self._update_cehrbert_record(
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cehrbert_record,
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year_str,
351-
)
352-
self._update_cehrbert_record(cehrbert_record, age_str)
353-
self._update_cehrbert_record(cehrbert_record, gender)
354-
self._update_cehrbert_record(cehrbert_record, race)
348+
self._update_cehrbert_record(cehrbert_record, year_str, first_visit_start_datetime)
349+
self._update_cehrbert_record(cehrbert_record, age_str, first_visit_start_datetime)
350+
self._update_cehrbert_record(cehrbert_record, gender, first_visit_start_datetime)
351+
self._update_cehrbert_record(cehrbert_record, race, first_visit_start_datetime)
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# A bool indicator to toggle between 1 and 2
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visit_segment_indicator = False

tests/unit_tests/data_generators/hf_data_generator/hf_med_to_cehrbert_mapping_test.py

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -36,6 +36,7 @@ def setUp(self):
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birth_datetime=datetime(1980, 4, 14, 0, 0),
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gender="Gender/F",
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race="Race/unknown",
39+
ethnicity="Ethnicity/unknown",
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visits=[inpatient_visit, outpatient_visit],
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)
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