@@ -11,11 +11,11 @@ This repository relies on the library https://github.com/stardist/stardist and p
1111Either from an existing task bundle
1212
1313``` bash
14- $> unzip com.cytomine.nuclei.segmentation.stardist-0.4 .0.zip
15- Archive: ./com.cytomine.nuclei-segmentation.stardist-0.4 .0.zip
16- inflating: com.cytomine.nuclei.segmentation.stardist-0.4 .0.tar
14+ $> unzip com.cytomine.nuclei.segmentation.stardist-1.0 .0.zip
15+ Archive: ./com.cytomine.nuclei-segmentation.stardist-1.0 .0.zip
16+ inflating: com.cytomine.nuclei.segmentation.stardist-1.0 .0.tar
1717 inflating: descriptor.yml
18- $> docker image load --input com.cytomine.nuclei.segmentation.stardist-0.4 .0.tar
18+ $> docker image load --input com.cytomine.nuclei.segmentation.stardist-1.0 .0.tar
19190949773899cf: Loading layer [==================================================> ] 84.2MB/84.2MB
202095c8f57bd29d: Loading layer [==================================================> ] 3.405MB/3.405MB
212195ce64f868d0: Loading layer [==================================================> ] 30.56MB/30.56MB
@@ -26,21 +26,21 @@ c70e485b159b: Loading layer [==================================================>
262684cc4f8d1ed4: Loading layer [==================================================> ] 2.087GB/2.087GB
2727e05ca7daf251: Loading layer [==================================================> ] 5.78MB/5.78MB
2828987f4b5a221e: Loading layer [==================================================> ] 6.656kB/6.656kB
29- Loaded image: com/cytomine/nuclei-segmentation/stardist:0.4 .0
29+ Loaded image: com/cytomine/nuclei-segmentation/stardist:1.0 .0
3030```
3131
3232### Build the docker image yourself
3333
3434```
35- docker build -t com/cytomine/nuclei-segmentation/stardist:0.4 .0 .
35+ docker build -t com/cytomine/nuclei-segmentation/stardist:1.0 .0 .
3636```
3737
3838## Run on data
3939
4040From this repository, run :
4141
4242``` bash
43- docker run -v ./examples/inputs:/inputs -v ./local-outputs:/outputs --rm -it com/cytomine/nuclei-segmentation/stardist:0.4 .0
43+ docker run -v ./examples/inputs:/inputs -v ./local-outputs:/outputs --rm -it com/cytomine/nuclei-segmentation/stardist:1.0 .0
4444```
4545
4646You can then explore the results in the ` ./local-outputs ` directory.
@@ -50,10 +50,10 @@ You can then explore the results in the `./local-outputs` directory.
50501 . Build the docker image as described above
51512 . save it as ` tar ` archive
5252``` bash
53- docker save -o com.cytomine.nuclei.segmentation.stardist-0.4. 0.tar com/cytomine/nuclei-segmentation/stardist:0.4 .0
53+ docker save -o com.cytomine.nuclei.segmentation.stardist-1.0. 0.tar com/cytomine/nuclei-segmentation/stardist:1.0 .0
5454```
55553 . Build the bundle
5656``` bash
57- zip com.cytomine.nuclei.segmentation.stardist-0.4. 0.zip descriptor.yml com.cytomine.nuclei.segmentation.stardist-0.4 .0.tar
57+ zip com.cytomine.nuclei.segmentation.stardist-1.0. 0.zip descriptor.yml com.cytomine.nuclei.segmentation.stardist-1.0 .0.tar
5858```
59594 . Upload the bundle on Cytomine
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