Welcome to grassp Discussions!

[mffrank]

👋 Welcome to grassp Discussions!

grassp (GRaph-based Analysis of Subcellular/Spatial Proteomics) is an open-source Python toolkit for working with mass-spectrometry-based subcellular-proteomics data. We use GitHub Discussions as the main forum for the community to:

• 🚀 Get started – Unsure how to load your dataset or run your first analysis? Ask here!
• 🧑‍🔬 Discuss methods – Share best practices for QC, enrichment, clustering, plotting, or anything else in the workflow.
• 💡 Propose features & ideas – Tell us what would make grassp even better for you.
• 🐛 Seek help debugging – Installation or runtime issues that don’t belong in the issue tracker can be talked through with the community.
• 📊 Showcase results – Share cool notebooks, figures, or publications that use grassp.
• 🤝 Connect & collaborate – Find other researchers working on similar questions.

Resources

• 📚 Official docs: https://public.czbiohub.org/comp.bio/grassp/
• 📦 PyPI: pip install grassp
• 📝 Reference workflows & tutorials: https://public.czbiohub.org/comp.bio/grassp/tutorials/
• 🧑‍💻 Contributing guide: CONTRIBUTING.md
• 🍃 Code of Conduct: CODE_OF_CONDUCT.md

Quick tips for great questions

1. Try to find an answer in the resources above
2. Search existing discussions first – your question might already have an answer.
3. Provide context: grassp version (import grassp; grassp.__version__), Python version, OS, and a minimal code snippet or dataset description.
4. Use code blocks for longer snippets (```python) and attach small data files if needed.
5. Be respectful and patient – we’re all here to learn together. 🌱