fix hardcoded MAJIQ param bug

Author: louadi

README.md

@@ -1,3 +1,7 @@
+[![PyPI version](https://badge.fury.io/py/nease.svg)](https://badge.fury.io/py/nease)
+
+
+
 # NEASE
 NEASE  (Network Enrichment method for Alternative Splicing Events) a tool for functional enrichment of alternative splicing exons/events. 
 

nease/process.py

@@ -323,7 +323,7 @@ def process_MAJIQ(data,
                 if len(targets)==len(junc_confid[j]):
 
                     #filter low confident diff used event
-                    targets=[ x  for x,y in zip(targets, junc_confid[j]) if y>= 0.95]
+                    targets=[ x  for x,y in zip(targets, junc_confid[j]) if y>= Majiq_confidence]
 
                     #save
                     jun_to_target[j]=targets

setup.py

@@ -11,7 +11,7 @@
 
 
 setup(name='nease',
-      version='1.2',
+      version='1.2.2',
       description='NEASE: A network-based approach for the enrichment of alternative splicing events',
       long_description=README,
       long_description_content_type="text/markdown",