No module named 'refined_tangram'

[Sophielsn]

Hi. After I create the environment, I cannot import the package:

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
Cell In[4], line 6
      4 import matplotlib.pyplot as plt
      5 from anndata import AnnData
----> 6 import refined_tangram as tg
      7 import benchmarking
      9 sc.logging.print_header()

ModuleNotFoundError: No module named 'refined_tangram'

I use this method to create:
conda env create -f environment.yml

[strasserle]

Hi @Sophielsn, thanks for raising this issue. @merlestahl we'll have a look into this.

[merlestahl]

Hi @Sophielsn, thanks for the feedback! The conda environment only includes the dependencies, but not the local package itself. It should be possible now to install the package with pip install . in your activated conda environment.