Merge branch 'development' into docs_fix

Author: JudithBernett

docs/conf.py

@@ -1,5 +1,6 @@
 #!/usr/bin/env python
 """Configuration file for the Sphinx documentation builder."""
+
 # mypy: ignore-errors
 # drevalpy documentation build configuration file
 #
@@ -56,9 +57,9 @@
 # the built documents.
 #
 # The short X.Y version.
-version = "1.4.1"
+version = "1.4.2"
 # The full version, including alpha/beta/rc tags.
-release = "1.4.1"
+release = "1.4.2"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

drevalpy/datasets/featurizer/create_molgnet_embeddings.py

@@ -4,6 +4,7 @@
 Creates MolGNet embeddings for molecules given their SMILES strings. This module needs torch_scatter.
     python create_molgnet_embeddings.py dataset_name --checkpoint meta/MolGNet.pt --data_path data
 """
+
 import argparse
 import math
 import os

drevalpy/models/MOLIR/molir.py

@@ -183,13 +183,13 @@ def predict(
             cell_line_input=cell_line_input,
             drug_input=drug_input,
         )
-        (gene_expression, mutations, cnvs) = (
+        gene_expression, mutations, cnvs = (
             input_data["gene_expression"],
             input_data["mutations"],
             input_data["copy_number_variation_gistic"],
         )
 
-        (gene_expression, mutations, cnvs) = filter_and_sort_omics(
+        gene_expression, mutations, cnvs = filter_and_sort_omics(
             model=self, gene_expression=gene_expression, mutations=mutations, cnvs=cnvs, cell_line_input=cell_line_input
         )
 

drevalpy/models/SuperFELTR/superfeltr.py

@@ -237,7 +237,7 @@ def predict(
         mutations = input_data["mutations"]
         cnvs = input_data["copy_number_variation_gistic"]
 
-        (gene_expression, mutations, cnvs) = filter_and_sort_omics(
+        gene_expression, mutations, cnvs = filter_and_sort_omics(
             model=self, gene_expression=gene_expression, mutations=mutations, cnvs=cnvs, cell_line_input=cell_line_input
         )
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "drevalpy"
-version = "1.4.1"
+version = "1.4.2"
 description = "Drug response evaluation of cancer cell line drug response models in a fair setting"
 authors = ["DrEvalPy development team"]
 license = "GPL-3.0"