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test_version.py
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1029 lines (861 loc) · 34.8 KB
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from __future__ import annotations
import datetime
from time import sleep
from typing import TYPE_CHECKING
from dandischema.conf import get_instance_config
from dandischema.consts import DANDI_SCHEMA_VERSION
from dandischema.models import AccessType
from django.conf import settings
from freezegun import freeze_time
import pytest
from dandiapi.api.models.dandiset import Dandiset
from dandiapi.api.services.metadata import version_aggregate_assets_summary
from dandiapi.api.services.metadata.exceptions import VersionMetadataConcurrentlyModifiedError
from dandiapi.api.tests.factories import (
DandisetFactory,
DraftVersionFactory,
PublishedVersionFactory,
UserFactory,
)
if TYPE_CHECKING:
from rest_framework.test import APIClient
from dandiapi.api import tasks
from dandiapi.api.asset_paths import add_version_asset_paths
from dandiapi.api.models import Asset, Version
from dandiapi.api.services.publish import _build_publishable_version_from_draft
from dandiapi.zarr.tasks import ingest_zarr_archive
from .fuzzy import (
DEFAULT_WAS_ASSOCIATED_WITH,
HTTP_URL_RE,
TIMESTAMP_RE,
URN_RE,
UTC_ISO_TIMESTAMP_RE,
VERSION_ID_RE,
)
_SCHEMA_CONFIG = get_instance_config()
@freeze_time()
@pytest.mark.django_db
def test_version_next_published_version_simultaneous():
dandiset = DandisetFactory.create()
# Versions created at the same time should have the same version string
version_str_1 = Version.next_published_version(dandiset)
version_str_2 = Version.next_published_version(dandiset)
assert version_str_1 == version_str_2
assert version_str_1 == VERSION_ID_RE
@freeze_time()
@pytest.mark.django_db
def test_version_next_published_version_preexisting():
dandiset = DandisetFactory.create()
# Given a saved Version at the current time, a different one should be allocated
version_str_1 = Version.next_published_version(dandiset)
PublishedVersionFactory.create(dandiset=dandiset, version=version_str_1)
version_str_2 = Version.next_published_version(dandiset)
assert version_str_2 != version_str_1
@pytest.mark.django_db
def test_draft_version_metadata_computed():
draft_version = DraftVersionFactory.create()
original_metadata = {'schemaVersion': DANDI_SCHEMA_VERSION}
draft_version.metadata = original_metadata
# Save the version to add computed properties to the metadata
draft_version.save()
expected_metadata = {
**original_metadata,
'manifestLocation': [HTTP_URL_RE],
'name': draft_version.name,
'identifier': f'{_SCHEMA_CONFIG.instance_name}:{draft_version.dandiset.identifier}',
'version': draft_version.version,
'id': (
f'{_SCHEMA_CONFIG.instance_name}:'
f'{draft_version.dandiset.identifier}/{draft_version.version}'
),
'url': (
f'{settings.DANDI_WEB_APP_URL}/dandiset/'
f'{draft_version.dandiset.identifier}/{draft_version.version}'
),
'repository': settings.DANDI_WEB_APP_URL,
'dateCreated': draft_version.dandiset.created.isoformat(),
'access': [{'schemaKey': 'AccessRequirements', 'status': AccessType.OpenAccess.value}],
'@context': f'https://raw.githubusercontent.com/dandi/schema/master/releases/{DANDI_SCHEMA_VERSION}/context.json',
'assetsSummary': {
'numberOfBytes': 0,
'numberOfFiles': 0,
'schemaKey': 'AssetsSummary',
},
}
expected_metadata['citation'] = draft_version.citation(expected_metadata)
assert draft_version.metadata == expected_metadata
@pytest.mark.django_db
def test_published_version_metadata_computed():
published_version = PublishedVersionFactory.create()
original_metadata = {'schemaVersion': DANDI_SCHEMA_VERSION}
published_version.metadata = original_metadata
# Save the version to add computed properties to the metadata
published_version.save()
expected_metadata = {
**original_metadata,
'manifestLocation': [HTTP_URL_RE],
'name': published_version.name,
'identifier': f'{_SCHEMA_CONFIG.instance_name}:{published_version.dandiset.identifier}',
'version': published_version.version,
'id': (
f'{_SCHEMA_CONFIG.instance_name}:'
f'{published_version.dandiset.identifier}/{published_version.version}'
),
'doi': (
f'{settings.DANDI_DOI_API_PREFIX}/'
f'{_SCHEMA_CONFIG.instance_name}.'
f'{published_version.dandiset.identifier}/{published_version.version}'
),
'url': (
f'{settings.DANDI_WEB_APP_URL}/dandiset/'
f'{published_version.dandiset.identifier}/{published_version.version}'
),
'repository': settings.DANDI_WEB_APP_URL,
'dateCreated': published_version.dandiset.created.isoformat(),
'access': [{'schemaKey': 'AccessRequirements', 'status': AccessType.OpenAccess.value}],
'@context': f'https://raw.githubusercontent.com/dandi/schema/master/releases/{DANDI_SCHEMA_VERSION}/context.json',
'assetsSummary': {
'numberOfBytes': 0,
'numberOfFiles': 0,
'schemaKey': 'AssetsSummary',
},
}
expected_metadata['citation'] = published_version.citation(expected_metadata)
assert published_version.metadata == expected_metadata
@pytest.mark.django_db
def test_version_metadata_citation_draft():
draft_version = DraftVersionFactory.create()
name = draft_version.metadata['name'].rstrip('.')
year = datetime.datetime.now(datetime.UTC).year
url = (
f'{settings.DANDI_WEB_APP_URL}/dandiset/'
f'{draft_version.dandiset.identifier}/{draft_version.version}'
)
assert (
draft_version.metadata['citation']
== f'{name} ({year}). (Version {draft_version.version}) [Data set]. DANDI Archive. {url}'
)
@pytest.mark.django_db
def test_version_metadata_citation_published():
published_version = PublishedVersionFactory.create()
name = published_version.metadata['name'].rstrip('.')
year = datetime.datetime.now(datetime.UTC).year
url = f'https://doi.org/{published_version.doi}'
assert published_version.metadata['citation'] == (
f'{name} ({year}). (Version {published_version.version}) [Data set]. DANDI Archive. {url}'
)
@pytest.mark.django_db
def test_version_metadata_citation_no_contributors(version):
version.metadata['contributor'] = []
version.save()
name = version.metadata['name'].rstrip('.')
year = datetime.datetime.now(datetime.UTC).year
assert version.metadata['citation'].startswith(
f'{name} ({year}). (Version {version.version}) [Data set]. DANDI Archive. '
)
@pytest.mark.django_db
def test_version_metadata_citation_contributor_not_in_citation(version):
version.metadata['contributor'] = [
{'name': 'Jane Doe'},
{'name': 'John Doe', 'includeInCitation': False},
]
version.save()
name = version.metadata['name'].rstrip('.')
year = datetime.datetime.now(datetime.UTC).year
assert version.metadata['citation'].startswith(
f'{name} ({year}). (Version {version.version}) [Data set]. DANDI Archive. '
)
@pytest.mark.django_db
def test_version_metadata_citation_contributor(version):
version.metadata['contributor'] = [{'name': 'Doe, Jane', 'includeInCitation': True}]
version.save()
name = version.metadata['name'].rstrip('.')
year = datetime.datetime.now(datetime.UTC).year
assert version.metadata['citation'].startswith(
f'Doe, Jane ({year}) {name} (Version {version.version}) [Data set]. DANDI Archive. '
)
@pytest.mark.django_db
def test_version_metadata_citation_multiple_contributors(version):
version.metadata['contributor'] = [
{'name': 'John Doe', 'includeInCitation': True},
{'name': 'Jane Doe', 'includeInCitation': True},
]
version.save()
name = version.metadata['name'].rstrip('.')
year = datetime.datetime.now(datetime.UTC).year
assert version.metadata['citation'].startswith(
f'John Doe; Jane Doe ({year}) {name} (Version {version.version}) [Data set]. '
f'DANDI Archive. '
)
@pytest.mark.django_db
def test_version_metadata_context(version):
version.metadata['schemaVersion'] = '6.6.6'
version.save()
assert version.metadata['@context'] == (
'https://raw.githubusercontent.com/dandi/schema/master/releases/6.6.6/context.json'
)
@pytest.mark.django_db
def test_version_metadata_assets_summary_missing(version, asset):
version.assets.add(asset)
# Verify that an Asset with no aggregatable metadata doesn't break anything
version.save()
@pytest.mark.django_db
def test_version_aggregate_assets_summary_valid_assets(draft_asset_factory):
draft_version = DraftVersionFactory.create()
valid_asset = draft_asset_factory(status=Asset.Status.VALID)
invalid_asset = draft_asset_factory(status=Asset.Status.INVALID)
draft_version.assets.add(valid_asset, invalid_asset)
version_aggregate_assets_summary(draft_version)
draft_version.refresh_from_db()
assert draft_version.metadata['assetsSummary']['numberOfFiles'] == 1
@pytest.mark.django_db
def test_version_valid_with_valid_asset(version, asset):
version.assets.add(asset)
version.status = Version.Status.VALID
version.save()
asset.status = Asset.Status.VALID
asset.save()
assert version.publishable
@pytest.mark.django_db
@pytest.mark.parametrize(
'status',
[
Version.Status.PENDING,
Version.Status.VALIDATING,
Version.Status.INVALID,
],
)
def test_version_invalid(version, status):
version.status = status
version.save()
assert not version.publishable
@pytest.mark.django_db
@pytest.mark.parametrize(
'status',
[
Asset.Status.PENDING,
Asset.Status.VALIDATING,
Asset.Status.INVALID,
],
)
def test_version_valid_with_invalid_asset(version, asset, status):
version.assets.add(asset)
version.status = Version.Status.VALID
version.save()
asset.status = status
asset.save()
assert not version.publishable
@pytest.mark.django_db
def test_version_publish_version(asset):
draft_version = DraftVersionFactory.create()
# Normally the publish endpoint would inject a doi, so we must do it manually
fake_doi = 'doi'
draft_version.assets.add(asset)
draft_version.save()
publish_version = _build_publishable_version_from_draft(draft_version)
publish_version.doi = fake_doi
publish_version.save()
assert publish_version.dandiset == draft_version.dandiset
assert publish_version.metadata == {
**draft_version.metadata,
'publishedBy': {
'id': URN_RE,
'name': 'DANDI publish',
'startDate': UTC_ISO_TIMESTAMP_RE,
'endDate': UTC_ISO_TIMESTAMP_RE,
'wasAssociatedWith': [DEFAULT_WAS_ASSOCIATED_WITH],
'schemaKey': 'PublishActivity',
},
'dateCreated': UTC_ISO_TIMESTAMP_RE,
'datePublished': UTC_ISO_TIMESTAMP_RE,
'manifestLocation': [HTTP_URL_RE],
'identifier': f'{_SCHEMA_CONFIG.instance_name}:{publish_version.dandiset.identifier}',
'version': publish_version.version,
'id': (
f'{_SCHEMA_CONFIG.instance_name}:'
f'{publish_version.dandiset.identifier}/{publish_version.version}'
),
'url': (
f'{settings.DANDI_WEB_APP_URL}/dandiset/{publish_version.dandiset.identifier}'
f'/{publish_version.version}'
),
'citation': publish_version.citation(publish_version.metadata),
'doi': fake_doi,
# The published_version cannot have a properly defined assetsSummary yet, since that would
# require having created rows the Asset-to-Version join table, which is a side affect.
'assetsSummary': {
'schemaKey': 'AssetsSummary',
'numberOfBytes': 0,
'numberOfFiles': 0,
},
}
@pytest.mark.django_db
def test_version_aggregate_assets_summary(draft_asset_factory):
version = DraftVersionFactory.create(status=Version.Status.VALID)
asset = draft_asset_factory(status=Asset.Status.VALID)
version.assets.add(asset)
version_aggregate_assets_summary(version)
version.refresh_from_db()
assert version.metadata['assetsSummary']['numberOfBytes'] == asset.blob.size
assert version.metadata['assetsSummary']['numberOfFiles'] == 1
assert version.metadata['assetsSummary']['schemaKey'] == 'AssetsSummary'
@pytest.mark.django_db
def test_version_publish_draft_version_metadata_updates(draft_asset_factory):
user = UserFactory.create()
version = DraftVersionFactory.create(status=Version.Status.PUBLISHING)
asset = draft_asset_factory(status=Asset.Status.VALID)
version.assets.add(asset)
tasks.publish_dandiset_task(version.dandiset.id, user.id)
published_version = Version.objects.latest('created')
# Ensure draft assets summary has been updated
version.refresh_from_db()
draft_asset_summary = version.metadata['assetsSummary']
published_asset_summary = published_version.metadata['assetsSummary']
assert published_asset_summary == draft_asset_summary
# Ensure published version contains expected new fields, and draft version does not
assert 'publishedBy' in published_version.metadata
assert 'datePublished' in published_version.metadata
assert 'publishedBy' not in version.metadata
assert 'datePublished' not in version.metadata
@pytest.mark.django_db
def test_version_aggregate_assets_summary_metadata_modified(draft_asset_factory):
version = DraftVersionFactory.create(status=Version.Status.VALID)
asset = draft_asset_factory(status=Asset.Status.VALID)
version.assets.add(asset)
# Modify the metadata passed to the function so that it's mismatched
version.metadata['foo'] = 'bar'
with pytest.raises(VersionMetadataConcurrentlyModifiedError):
version_aggregate_assets_summary(version)
@pytest.mark.django_db
def test_version_size(
version,
asset_factory,
asset_blob_factory,
embargoed_asset_blob_factory,
zarr_archive_factory,
):
version.assets.add(asset_factory(blob=asset_blob_factory(size=100)))
version.assets.add(asset_factory(blob=embargoed_asset_blob_factory(size=200)))
version.assets.add(asset_factory(blob=None, zarr=zarr_archive_factory(size=400)))
add_version_asset_paths(version=version)
assert version.size == 700
@pytest.mark.django_db
def test_version_rest_list(api_client, version):
# Create an extra version so that there are multiple versions to filter down
DraftVersionFactory.create()
assert api_client.get(f'/api/dandisets/{version.dandiset.identifier}/versions/').data == {
'count': 1,
'next': None,
'previous': None,
'results': [
{
'dandiset': {
'identifier': version.dandiset.identifier,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'contact_person': version.metadata['contributor'][0]['name'],
'embargo_status': 'OPEN',
'star_count': 0,
'is_starred': False,
},
'version': version.version,
'name': version.name,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'asset_count': 0,
'active_uploads': 0,
'size': 0,
'status': version.status,
}
],
}
@pytest.mark.django_db
def test_version_rest_retrieve(api_client, version):
# Create an extra version so that there are multiple versions to filter down
DraftVersionFactory.create()
assert (
api_client.get(
f'/api/dandisets/{version.dandiset.identifier}/versions/{version.version}/'
).data
== version.metadata
)
@pytest.mark.django_db
def test_version_rest_info(api_client, version):
assert api_client.get(
f'/api/dandisets/{version.dandiset.identifier}/versions/{version.version}/info/'
).data == {
'dandiset': {
'identifier': version.dandiset.identifier,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'contact_person': version.metadata['contributor'][0]['name'],
'embargo_status': 'OPEN',
'star_count': 0,
'is_starred': False,
},
'version': version.version,
'name': version.name,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'asset_count': 0,
'active_uploads': 0,
'metadata': version.metadata,
'size': version.size,
'status': version.status,
'asset_validation_errors': [],
'version_validation_errors': [],
'contact_person': version.metadata['contributor'][0]['name'],
}
@pytest.mark.django_db
@pytest.mark.parametrize(
'asset_status',
[Asset.Status.PENDING, Asset.Status.VALIDATING, Asset.Status.VALID, Asset.Status.INVALID],
)
def test_version_rest_info_with_asset(api_client, draft_asset_factory, asset_status: Asset.Status):
version = DraftVersionFactory.create(status=Version.Status.VALID)
asset = draft_asset_factory(status=asset_status)
version.assets.add(asset)
add_version_asset_paths(version=version)
# Create expected validation errors for pending/validating assets
expected_validation_errors = (
[
{
'field': '',
'message': 'asset is currently being validated, please wait.',
'path': asset.path,
}
]
if asset_status in [Asset.Status.PENDING, Asset.Status.VALIDATING]
else []
)
assert api_client.get(
f'/api/dandisets/{version.dandiset.identifier}/versions/{version.version}/info/'
).data == {
'dandiset': {
'identifier': version.dandiset.identifier,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'contact_person': version.metadata['contributor'][0]['name'],
'embargo_status': 'OPEN',
'star_count': 0,
'is_starred': False,
},
'version': version.version,
'name': version.name,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'asset_count': 1,
'active_uploads': 0,
'metadata': version.metadata,
'size': version.size,
'status': Asset.Status.VALID,
'asset_validation_errors': expected_validation_errors,
'version_validation_errors': [],
'contact_person': version.metadata['contributor'][0]['name'],
}
@pytest.mark.django_db
def test_version_rest_update(api_client):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
new_name = 'A unique and special name!'
new_metadata = {
'@context': (
'https://raw.githubusercontent.com/dandi/schema/master/releases/'
f'{DANDI_SCHEMA_VERSION}/context.json'
),
'schemaVersion': DANDI_SCHEMA_VERSION,
'foo': 'bar',
'num': 123,
'list': ['a', 'b', 'c'],
'very_large': 'words' * 10,
'contributor': [
{
'name': 'Vargas, Getúlio',
'roleName': ['dcite:ContactPerson'],
'schemaKey': 'Person',
}
],
# This should be stripped out
'dateCreated': 'foobar',
}
year = datetime.datetime.now(datetime.UTC).year
url = f'{settings.DANDI_WEB_APP_URL}/dandiset/{draft_version.dandiset.identifier}/draft'
saved_metadata = {
**new_metadata,
'schemaVersion': DANDI_SCHEMA_VERSION,
'manifestLocation': [
f'{settings.DANDI_API_URL}/api/dandisets/{draft_version.dandiset.identifier}/versions/draft/assets/'
],
'name': new_name,
'identifier': f'{_SCHEMA_CONFIG.instance_name}:{draft_version.dandiset.identifier}',
'id': f'{_SCHEMA_CONFIG.instance_name}:{draft_version.dandiset.identifier}/draft',
'version': 'draft',
'url': url,
'repository': settings.DANDI_WEB_APP_URL,
'dateCreated': UTC_ISO_TIMESTAMP_RE,
'access': [{'schemaKey': 'AccessRequirements', 'status': AccessType.OpenAccess.value}],
'citation': f'{new_name} ({year}). (Version draft) [Data set]. DANDI Archive. {url}',
'assetsSummary': {
'numberOfBytes': 0,
'numberOfFiles': 0,
'schemaKey': 'AssetsSummary',
},
}
assert api_client.put(
f'/api/dandisets/{draft_version.dandiset.identifier}/versions/{draft_version.version}/',
{'metadata': new_metadata, 'name': new_name},
).data == {
'dandiset': {
'identifier': draft_version.dandiset.identifier,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'contact_person': 'Vargas, Getúlio',
'embargo_status': 'OPEN',
'star_count': 0,
'is_starred': False,
},
'version': draft_version.version,
'name': new_name,
'created': TIMESTAMP_RE,
'modified': TIMESTAMP_RE,
'asset_count': draft_version.asset_count,
'active_uploads': draft_version.active_uploads,
'metadata': saved_metadata,
'size': draft_version.size,
'status': 'Pending',
'asset_validation_errors': [],
'version_validation_errors': [],
'contact_person': 'Vargas, Getúlio',
}
# The version modified date should be updated
start_time = draft_version.modified
draft_version.refresh_from_db()
end_time = draft_version.modified
assert start_time < end_time
assert draft_version.metadata == saved_metadata
assert draft_version.name == new_name
assert draft_version.status == Version.Status.PENDING
@pytest.mark.django_db
def test_version_rest_update_unembargo_in_progress(api_client):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(
dandiset__embargo_status=Dandiset.EmbargoStatus.UNEMBARGOING, dandiset__owners=[user]
)
api_client.force_authenticate(user=user)
new_name = 'A unique and special name!'
new_metadata = {
'@context': (
'https://raw.githubusercontent.com/dandi/schema/master/releases/'
f'{DANDI_SCHEMA_VERSION}/context.json'
),
'schemaVersion': DANDI_SCHEMA_VERSION,
'num': 123,
}
resp = api_client.put(
f'/api/dandisets/{draft_version.dandiset.identifier}/versions/{draft_version.version}/',
{'metadata': new_metadata, 'name': new_name},
)
assert resp.status_code == 400
@pytest.mark.django_db
def test_version_rest_update_published_version(api_client):
user = UserFactory.create()
published_version = PublishedVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
new_name = 'A unique and special name!'
new_metadata = {'foo': 'bar', 'num': 123, 'list': ['a', 'b', 'c']}
resp = api_client.put(
f'/api/dandisets/{published_version.dandiset.identifier}'
f'/versions/{published_version.version}/',
{'metadata': new_metadata, 'name': new_name},
)
assert resp.status_code == 405
assert resp.data == 'Only draft versions can be modified.'
@pytest.mark.django_db
def test_version_rest_update_not_an_owner(api_client, version):
user = UserFactory.create()
api_client.force_authenticate(user=user)
new_name = 'A unique and special name!'
new_metadata = {'foo': 'bar', 'num': 123, 'list': ['a', 'b', 'c']}
assert (
api_client.put(
f'/api/dandisets/{version.dandiset.identifier}/versions/{version.version}/',
{'metadata': new_metadata, 'name': new_name},
).status_code
== 403
)
@pytest.mark.parametrize(
('access'),
[
'some value',
123,
None,
[],
['a', 'b'],
['a', 'b', {}],
[{'schemaKey': 'AccessRequirements', 'status': 'foobar'}],
],
)
@pytest.mark.django_db
def test_version_rest_update_access_values(api_client, access):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
new_metadata = {**draft_version.metadata, 'access': access}
resp = api_client.put(
f'/api/dandisets/{draft_version.dandiset.identifier}/versions/{draft_version.version}/',
{'metadata': new_metadata, 'name': draft_version.name},
)
assert resp.status_code == 200
draft_version.refresh_from_db()
access = draft_version.metadata['access']
assert access != new_metadata['access']
assert access[0]['schemaKey'] == 'AccessRequirements'
assert (
access[0]['status'] == AccessType.EmbargoedAccess.value
if draft_version.dandiset.embargoed
else AccessType.OpenAccess.value
)
@pytest.mark.django_db
def test_version_rest_update_access_missing(api_client):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
# Check that the field missing entirely is also okay
new_metadata = {**draft_version.metadata}
new_metadata.pop('access', None)
resp = api_client.put(
f'/api/dandisets/{draft_version.dandiset.identifier}/versions/{draft_version.version}/',
{'metadata': new_metadata, 'name': draft_version.name},
)
assert resp.status_code == 200
draft_version.refresh_from_db()
assert 'access' in draft_version.metadata
access = draft_version.metadata['access']
assert access[0]['schemaKey'] == 'AccessRequirements'
assert (
access[0]['status'] == AccessType.EmbargoedAccess.value
if draft_version.dandiset.embargoed
else AccessType.OpenAccess.value
)
@pytest.mark.django_db
def test_version_rest_update_access_valid(api_client):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
# Check that extra fields persist
new_metadata = {**draft_version.metadata, 'access': [{'extra': 'field'}]}
resp = api_client.put(
f'/api/dandisets/{draft_version.dandiset.identifier}/versions/{draft_version.version}/',
{'metadata': new_metadata, 'name': draft_version.name},
)
assert resp.status_code == 200
draft_version.refresh_from_db()
access = draft_version.metadata['access']
assert access != new_metadata['access']
assert access[0]['schemaKey'] == 'AccessRequirements'
assert (
access[0]['status'] == AccessType.EmbargoedAccess.value
if draft_version.dandiset.embargoed
else AccessType.OpenAccess.value
)
assert access[0]['extra'] == 'field'
@pytest.mark.django_db
def test_version_rest_publish(
api_client: APIClient,
draft_asset_factory,
published_asset_factory,
):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
old_draft_asset: Asset = draft_asset_factory()
old_published_asset: Asset = published_asset_factory()
assert not old_draft_asset.published
assert old_published_asset.published
draft_version.assets.add(old_draft_asset)
draft_version.assets.add(old_published_asset)
# Validate the metadata to mark the assets and version as `VALID`
tasks.validate_asset_metadata_task(old_draft_asset.id)
tasks.validate_version_metadata_task(draft_version.id)
draft_version.refresh_from_db()
assert draft_version.publishable
resp = api_client.post(
f'/api/dandisets/{draft_version.dandiset.identifier}'
f'/versions/{draft_version.version}/publish/'
)
assert resp.status_code == 202
draft_version.refresh_from_db()
assert draft_version.status == Version.Status.PUBLISHING
@pytest.mark.django_db
def test_version_rest_publish_embargo(api_client: APIClient):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(
dandiset__embargo_status=Dandiset.EmbargoStatus.EMBARGOED, dandiset__owners=[user]
)
api_client.force_authenticate(user=user)
resp = api_client.post(
f'/api/dandisets/{draft_version.dandiset.identifier}'
f'/versions/{draft_version.version}/publish/'
)
assert resp.status_code == 400
@pytest.mark.django_db
def test_version_rest_publish_unembargo_in_progress(api_client: APIClient):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(
dandiset__embargo_status=Dandiset.EmbargoStatus.UNEMBARGOING, dandiset__owners=[user]
)
api_client.force_authenticate(user=user)
resp = api_client.post(
f'/api/dandisets/{draft_version.dandiset.identifier}'
f'/versions/{draft_version.version}/publish/'
)
assert resp.status_code == 400
@pytest.mark.django_db
def test_version_rest_publish_zarr(
api_client,
draft_asset_factory,
zarr_archive_factory,
zarr_file_factory,
):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
# create and ingest zarr archive
zarr_archive = zarr_archive_factory(dandiset=draft_version.dandiset, status='Uploaded')
zarr_file_factory(zarr_archive=zarr_archive)
ingest_zarr_archive(zarr_archive.zarr_id)
zarr_archive.refresh_from_db()
zarr_asset: Asset = draft_asset_factory(zarr=zarr_archive, blob=None)
normal_asset: Asset = draft_asset_factory()
draft_version.assets.add(zarr_asset)
draft_version.assets.add(normal_asset)
# Validate the metadata to mark the assets and version as `VALID`
tasks.validate_asset_metadata_task(zarr_asset.id)
tasks.validate_asset_metadata_task(normal_asset.id)
tasks.validate_version_metadata_task(draft_version.id)
draft_version.refresh_from_db()
assert draft_version.publishable
resp = api_client.post(
f'/api/dandisets/{draft_version.dandiset.identifier}'
f'/versions/{draft_version.version}/publish/'
)
assert resp.status_code == 400
assert resp.json() == 'Cannot publish dandisets which contain zarrs'
@pytest.mark.django_db
def test_version_rest_publish_not_an_owner(api_client, version, asset):
user = UserFactory.create()
api_client.force_authenticate(user=user)
version.assets.add(asset)
resp = api_client.post(
f'/api/dandisets/{version.dandiset.identifier}/versions/{version.version}/publish/'
)
assert resp.status_code == 403
@pytest.mark.django_db
def test_version_rest_publish_not_a_draft(api_client, asset):
user = UserFactory.create()
published_version = PublishedVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
published_version.assets.add(asset)
resp = api_client.post(
f'/api/dandisets/{published_version.dandiset.identifier}'
f'/versions/{published_version.version}/publish/'
)
assert resp.status_code == 405
@pytest.mark.django_db
@pytest.mark.parametrize(
('status', 'expected_data', 'expected_status_code'),
[
(
Version.Status.PENDING,
'Metadata validation is pending for this dandiset, please try again later.',
409,
),
(Version.Status.VALIDATING, 'Dandiset is currently being validated', 409),
(Version.Status.INVALID, 'Dandiset metadata or asset metadata is not valid', 400),
(
Version.Status.PUBLISHED,
'There have been no changes to the draft version since the last publish.',
400,
),
(Version.Status.PUBLISHING, 'Dandiset is currently being published', 423),
],
)
def test_version_rest_publish_invalid(
api_client: APIClient,
asset: Asset,
status: str,
expected_data: str,
expected_status_code: int,
):
user = UserFactory.create()
draft_version = DraftVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
draft_version.assets.add(asset)
draft_version.status = status
draft_version.save()
resp = api_client.post(
f'/api/dandisets/{draft_version.dandiset.identifier}'
f'/versions/{draft_version.version}/publish/'
)
assert resp.status_code == expected_status_code
assert resp.data == expected_data
@pytest.mark.django_db
def test_version_rest_update_no_changed_metadata(api_client: APIClient):
"""Test that PUT'ing unchanged metadata doesn't trigger revalidation or DB modifications."""
user = UserFactory.create(is_superuser=True)
draft_version = DraftVersionFactory.create()
api_client.force_authenticate(user=user)
old_modified_time = draft_version.modified
sleep(0.1)
api_client.put(
f'/api/dandisets/{draft_version.dandiset.identifier}/versions/{draft_version.version}/',
{'metadata': draft_version.metadata, 'name': draft_version.name},
)
draft_version.refresh_from_db()
assert draft_version.modified == old_modified_time
@pytest.mark.django_db
def test_version_rest_delete_published_not_admin(api_client):
user = UserFactory.create()
published_version = PublishedVersionFactory.create(dandiset__owners=[user])
api_client.force_authenticate(user=user)
response = api_client.delete(
f'/api/dandisets/{published_version.dandiset.identifier}'
f'/versions/{published_version.version}/'
)
assert response.status_code == 403
assert response.data == 'Cannot delete published versions'
assert published_version in Version.objects.all()
@pytest.mark.django_db
def test_version_rest_delete_published_admin(api_client):
user = UserFactory.create(is_superuser=True)
published_version = PublishedVersionFactory.create()
api_client.force_authenticate(user=user)
response = api_client.delete(
f'/api/dandisets/{published_version.dandiset.identifier}'
f'/versions/{published_version.version}/'
)
assert response.status_code == 204