Merge branch 'master' into bf-1594

Author: yarikoptic

.autorc

@@ -4,6 +4,7 @@
     "email": "dandibot@mit.edu",
     "noVersionPrefix": true,
     "plugins": [
+        "protected-branch",
         "git-tag",
         [
             "exec",

.github/workflows/claude.yml

@@ -25,7 +25,7 @@ jobs:
       id-token: write
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
         with:
           fetch-depth: 1
 

.github/workflows/codeql.yml

@@ -24,7 +24,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Initialize CodeQL
         uses: github/codeql-action/init@v3

.github/workflows/docs.yml

@@ -17,7 +17,7 @@ jobs:
           #- 3.11
     steps:
     - name: Check out repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@v5
       with:
         # Fetch all commits so that versioneer will return something compatible
         # with semantic-version

.github/workflows/lint.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Set up environment
-      uses: actions/checkout@v4
+      uses: actions/checkout@v5
       with:
         fetch-depth: 0
     - name: Set up Python

.github/workflows/release.yml

@@ -13,7 +13,7 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'ci skip') && !contains(github.event.head_commit.message, 'skip ci')"
     steps:
       - name: Checkout source
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
         with:
           fetch-depth: 0
 
@@ -33,12 +33,14 @@ jobs:
 
       - name: Create release
         run: |
+          echo "@${{ github.actor }} is creating a release triggered by ${{ github.event_name }}"
           if [ "${{ github.event_name }}" = workflow_dispatch ]
           then opts=
           else opts=--only-publish-with-release-label
           fi
           ~/auto shipit -vv $opts
         env:
+          PROTECTED_BRANCH_REVIEWER_TOKEN: ${{ secrets.GH_TOKEN }}
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           TWINE_USERNAME: __token__
           TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}

.github/workflows/run-tests.yml

@@ -61,7 +61,7 @@ jobs:
 
     steps:
     - name: Set up environment
-      uses: actions/checkout@v4
+      uses: actions/checkout@v5
       with:
         # Fetch all commits so that versioneer will return something compatible
         # with semantic-version

.github/workflows/typing.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
         with:
           fetch-depth: 0
 

.github/workflows/update-year.yml

@@ -13,7 +13,7 @@ jobs:
   run:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0
       - uses: FantasticFiasco/action-update-license-year@v3

CHANGELOG.md

@@ -1,3 +1,71 @@
+# 0.71.0 (Fri Aug 22 2025)
+
+#### 🚀 Enhancement
+
+- Rename dandiarchive `staging` => `sandbox` [#1668](https://github.com/dandi/dandi-cli/pull/1668) ([@mvandenburgh](https://github.com/mvandenburgh))
+
+#### 🐛 Bug Fix
+
+- BF: fix upload of zarrs when connection sockets time out -- retry [#1675](https://github.com/dandi/dandi-cli/pull/1675) ([@yarikoptic](https://github.com/yarikoptic) [@CodyCBakerPhD](https://github.com/CodyCBakerPhD))
+- BF: fix upload of zarrs when we do not use minted upload URLs in time [#1674](https://github.com/dandi/dandi-cli/pull/1674) ([@yarikoptic](https://github.com/yarikoptic) [@CodyCBakerPhD](https://github.com/CodyCBakerPhD))
+- organize: operate on unique file-paths in case of multiple paths leading to the same file(s) [#1673](https://github.com/dandi/dandi-cli/pull/1673) ([@yarikoptic](https://github.com/yarikoptic))
+
+#### 🏠 Internal
+
+- Revert back to use of GITHUB_TOKEN for actual push of PR to be merged with changelog [#1688](https://github.com/dandi/dandi-cli/pull/1688) ([@yarikoptic](https://github.com/yarikoptic))
+- Fix auto release [#1684](https://github.com/dandi/dandi-cli/pull/1684) ([@CodyCBakerPhD](https://github.com/CodyCBakerPhD))
+- Bring 0.70.0 tag into the "master" git line [#1682](https://github.com/dandi/dandi-cli/pull/1682) ([@dandibot](https://github.com/dandibot) [@yarikoptic](https://github.com/yarikoptic))
+- [gh-actions](deps): Bump actions/checkout from 4 to 5 [#1679](https://github.com/dandi/dandi-cli/pull/1679) ([@dependabot[bot]](https://github.com/dependabot[bot]) [@yarikoptic](https://github.com/yarikoptic))
+
+#### 📝 Documentation
+
+- Merge 0.70.0 tag (CHANGELOG) into master [#1681](https://github.com/dandi/dandi-cli/pull/1681) ([@dandibot](https://github.com/dandibot) [@yarikoptic](https://github.com/yarikoptic))
+
+#### 🧪 Tests
+
+- Update `dandi-archive` docker env vars [#1678](https://github.com/dandi/dandi-cli/pull/1678) ([@mvandenburgh](https://github.com/mvandenburgh) [@yarikoptic](https://github.com/yarikoptic))
+
+#### Authors: 5
+
+- [@dependabot[bot]](https://github.com/dependabot[bot])
+- Cody Baker ([@CodyCBakerPhD](https://github.com/CodyCBakerPhD))
+- Dandi Bot ([@dandibot](https://github.com/dandibot))
+- Mike VanDenburgh ([@mvandenburgh](https://github.com/mvandenburgh))
+- Yaroslav Halchenko ([@yarikoptic](https://github.com/yarikoptic))
+
+---
+
+# 0.70.0 (Sat Jul 26 2025)
+
+#### 🚀 Enhancement
+
+- Expand Zarr dependency to include version 3 [#1653](https://github.com/dandi/dandi-cli/pull/1653) ([@kabilar](https://github.com/kabilar))
+
+#### 🐛 Bug Fix
+
+- Fix bug when running metadata extraction on BIDS with NWB [#1656](https://github.com/dandi/dandi-cli/pull/1656) ([@CodyCBakerPhD](https://github.com/CodyCBakerPhD) [@yarikoptic](https://github.com/yarikoptic))
+
+#### 🏠 Internal
+
+- Use name/email corresponding to our dandibot so we could allow it to push releases [#1669](https://github.com/dandi/dandi-cli/pull/1669) ([@yarikoptic](https://github.com/yarikoptic))
+- Adjust CI to differentiate obolibrary tests [#1657](https://github.com/dandi/dandi-cli/pull/1657) ([@CodyCBakerPhD](https://github.com/CodyCBakerPhD) [@yarikoptic](https://github.com/yarikoptic))
+- Improve `follow_redirect()` so that it has a singular checkpoint for limiting number of attempts and clearer logic [#1634](https://github.com/dandi/dandi-cli/pull/1634) ([@candleindark](https://github.com/candleindark))
+- [Chore] Fix MyPy [#1654](https://github.com/dandi/dandi-cli/pull/1654) ([@CodyCBakerPhD](https://github.com/CodyCBakerPhD))
+
+#### 🧪 Tests
+
+- RF: in our example skip going through all dandisets/assets! [#1667](https://github.com/dandi/dandi-cli/pull/1667) ([@yarikoptic](https://github.com/yarikoptic))
+- Upgrade Windows image for test CI [#1655](https://github.com/dandi/dandi-cli/pull/1655) ([@kabilar](https://github.com/kabilar))
+
+#### Authors: 4
+
+- Cody Baker ([@CodyCBakerPhD](https://github.com/CodyCBakerPhD))
+- Isaac To ([@candleindark](https://github.com/candleindark))
+- Kabilar Gunalan ([@kabilar](https://github.com/kabilar))
+- Yaroslav Halchenko ([@yarikoptic](https://github.com/yarikoptic))
+
+---
+
 # 0.69.3 (Wed Jun 04 2025)
 
 #### 🐛 Bug Fix