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[pre-commit.ci] auto fixes from pre-commit.com hooks
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dandischema/tests/test_google_dataset_metadata.py

Lines changed: 33 additions & 33 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
import copy
2-
from typing import Dict, Any
2+
from typing import Any, Dict
33

44
import pytest
55

@@ -22,15 +22,15 @@ def sample_dandiset_metadata() -> Dict[str, Any]:
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"roleName": ["dcite:Author", "dcite:ContactPerson"],
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"identifier": "0000-0001-2345-6789",
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"email": "john.doe@example.com",
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"includeInCitation": True
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"includeInCitation": True,
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},
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{
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"schemaKey": "Organization",
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"name": "Test Organization",
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"roleName": ["dcite:Sponsor"],
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"identifier": "https://ror.org/xxxxxxxxx",
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"includeInCitation": False
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}
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"includeInCitation": False,
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},
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],
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"license": ["spdx:CC-BY-4.0"],
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"schemaVersion": "0.6.4",
@@ -41,63 +41,63 @@ def sample_dandiset_metadata() -> Dict[str, Any]:
4141
"dataStandard": [
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{
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"name": "Neurodata Without Borders (NWB)",
44-
"identifier": "RRID:SCR_015242"
44+
"identifier": "RRID:SCR_015242",
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}
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],
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"species": [
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{
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"name": "Homo sapiens",
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"identifier": "http://purl.obolibrary.org/obo/NCBITaxon_9606"
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"identifier": "http://purl.obolibrary.org/obo/NCBITaxon_9606",
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}
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],
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"approach": [
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{
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"name": "electrophysiology",
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"identifier": "http://uri.interlex.org/base/ilx_0739363"
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"identifier": "http://uri.interlex.org/base/ilx_0739363",
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}
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],
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"measurementTechnique": [
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{
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"name": "multi-electrode extracellular electrophysiology",
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"identifier": "http://uri.interlex.org/base/ilx_0739400"
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"identifier": "http://uri.interlex.org/base/ilx_0739400",
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}
64-
]
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}
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],
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},
6666
}
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6969
def test_google_dataset_metadata_basic_transformation(sample_dandiset_metadata):
7070
"""Test that the basic transformation works correctly"""
7171
result = google_dataset_metadata(sample_dandiset_metadata)
72-
72+
7373
# Check that the original metadata is not modified
7474
assert sample_dandiset_metadata != result
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# Check that schema:Dataset is added to schemaKey
7777
assert "schema:Dataset" in result["schemaKey"]
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# Check that creator is properly formatted
8080
assert "creator" in result
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assert isinstance(result["creator"], list)
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assert len(result["creator"]) > 0
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# Check first creator
8585
creator = result["creator"][0]
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assert creator["schemaKey"] == "schema:Person"
8787
assert "name" in creator
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88+
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# Check that license is properly formatted
9090
assert "license" in result
9191
assert isinstance(result["license"], list)
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assert "https://spdx.org/licenses/CC-BY-4.0" in result["license"]
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# Check that version is present
9595
assert "version" in result
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# Check that identifier is properly formatted
9898
assert "identifier" in result
9999
assert result["identifier"] == "https://identifiers.org/DANDI:000707"
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# Check that keywords exist
102102
assert "keywords" in result
103103
assert isinstance(result["keywords"], list)
@@ -110,7 +110,7 @@ def test_google_dataset_metadata_preserves_original(sample_dandiset_metadata):
110110
"""Test that the original metadata is not modified"""
111111
original = copy.deepcopy(sample_dandiset_metadata)
112112
google_dataset_metadata(sample_dandiset_metadata)
113-
113+
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# Verify the original is unchanged
115115
assert original == sample_dandiset_metadata
116116

@@ -122,12 +122,12 @@ def test_google_dataset_metadata_with_existing_creator(sample_dandiset_metadata)
122122
{
123123
"schemaKey": "Person",
124124
"name": "Jane Smith",
125-
"identifier": "https://orcid.org/0000-0002-3456-7890"
125+
"identifier": "https://orcid.org/0000-0002-3456-7890",
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}
127127
]
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129129
result = google_dataset_metadata(sample_dandiset_metadata)
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# Check that the existing creator is preserved
132132
assert result["creator"] == sample_dandiset_metadata["creator"]
133133

@@ -136,13 +136,13 @@ def test_google_dataset_metadata_with_existing_keywords(sample_dandiset_metadata
136136
"""Test that existing keywords are preserved and extended"""
137137
# Add keywords field
138138
sample_dandiset_metadata["keywords"] = ["test", "example"]
139-
139+
140140
result = google_dataset_metadata(sample_dandiset_metadata)
141-
141+
142142
# Check that the existing keywords are preserved
143143
assert "test" in result["keywords"]
144144
assert "example" in result["keywords"]
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145+
146146
# Check that additional keywords are added
147147
assert "neuroscience" in result["keywords"]
148148
assert "DANDI" in result["keywords"]
@@ -153,9 +153,9 @@ def test_google_dataset_metadata_with_no_license(sample_dandiset_metadata):
153153
# Remove license field
154154
no_license_metadata = copy.deepcopy(sample_dandiset_metadata)
155155
del no_license_metadata["license"]
156-
156+
157157
result = google_dataset_metadata(no_license_metadata)
158-
158+
159159
# Check that license is not in the result
160160
assert "license" not in result
161161

@@ -165,9 +165,9 @@ def test_google_dataset_metadata_with_no_contributors(sample_dandiset_metadata):
165165
# Remove contributor field
166166
no_contributor_metadata = copy.deepcopy(sample_dandiset_metadata)
167167
del no_contributor_metadata["contributor"]
168-
168+
169169
result = google_dataset_metadata(no_contributor_metadata)
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170+
171171
# Check that creator is not in the result
172172
assert "creator" not in result
173173

@@ -176,9 +176,9 @@ def test_google_dataset_metadata_with_date_published(sample_dandiset_metadata):
176176
"""Test handling of datePublished field"""
177177
# Add datePublished field
178178
sample_dandiset_metadata["datePublished"] = "2023-01-01T00:00:00Z"
179-
179+
180180
result = google_dataset_metadata(sample_dandiset_metadata)
181-
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182182
# Check that datePublished is preserved
183183
assert result["datePublished"] == "2023-01-01T00:00:00Z"
184184

@@ -187,8 +187,8 @@ def test_google_dataset_metadata_with_date_created_fallback(sample_dandiset_meta
187187
"""Test fallback to dateCreated when datePublished is not present"""
188188
# Add dateCreated field
189189
sample_dandiset_metadata["dateCreated"] = "2022-01-01T00:00:00Z"
190-
190+
191191
result = google_dataset_metadata(sample_dandiset_metadata)
192-
192+
193193
# Check that datePublished is set to dateCreated
194194
assert result["datePublished"] == "2022-01-01T00:00:00Z"

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