two new images

Author: libjohn

docs/slides/index.html

@@ -62,12 +62,14 @@
 
 Use Git to manage version control
 
-Pull • Commit • Push • Branch • Merge • Revert
+Add • Commit • Branch • Merge • Revert
+
+(Pull • Push • Clone • Fork • Collaborate)
 
 ---
 class: middle, center
 
-## Reproducible Research (Literate Code)
+## Reproducible Research<br>(Literate Code)
 
 ## Collaborative
 
@@ -80,7 +82,7 @@
 
 - **Reproducibility** is a Top Priority
 
-- Seamless operation with Markdown
+- Seamless operation with [Markdown](https://rmarkdown.rstudio.com/)
 
 - **Git for Version Control**
 
@@ -136,6 +138,7 @@
 
 RStudio will manage the most commonly used Git commands
 ---
+exclude: true
 class:  middle, center
 
 ## Version Control
@@ -168,7 +171,7 @@
 
 5. Integrate Excel Table into **Word > PDF**
 ---
-
+exclude: true
 ## Outline
 
 .pull-left[1. Git
@@ -223,6 +226,8 @@
 
 - Track changes in any file set
 
+- Add • Commit • Branch • Merge • Revert
+
 ]
 
 .pull-right[
@@ -247,6 +252,7 @@
 
 
 ---
+exclude: true
 class: center, middle, softblue
 
 ## Social **git Repositories**
@@ -262,7 +268,7 @@
     - even if you are only **sharing with yourself** 
 
 ---
-
+exclude: true
 .pull-left[
 <figure><img src="images/The_Bookworm_-_Grohmann_Museum.jpg"><figcaption> Image Credit: Der Bücherwurm (The Bookworm) by Carl Spitzweg <br><a href="https://commons.wikimedia.org/wiki/File:The_Bookworm_-_Grohmann_Museum.jpg">Wikimedia Commons</a></figcaption></figure>
 ]
@@ -288,6 +294,7 @@
 Library ~= Repository
 
 ---
+exclude: true
 class: bottom
 background-image: url(images/Edit-a-thon_lrg.jpg)
 
@@ -355,6 +362,7 @@
 Effective collaboration extends the diversity of input and feedback available to you.  
 
 ---
+exclude: true
 class: center
 .pull-left[ ![](images/gitlab.png)  ]
 .pull-right[ ![](images/github.png)  ]
@@ -371,6 +379,7 @@
 
 
 ---
+exclude: true
 class: green, middle, center
 
 
@@ -394,17 +403,19 @@
 
 
 ---
+exclude: true
 ## Duke's GitLab v Public Hubs
 
 
 
 
-<div id="htmlwidget-ddc602756d762c8a7951" style="width:100%;height:auto;" class="datatables html-widget"></div>
-<script type="application/json" data-for="htmlwidget-ddc602756d762c8a7951">{"x":{"filter":"none","data":[["Private Repo","Public Repo","Duke NetId","User Community"],["by Default","Yes","Yes","Duke University -- &lt;br&gt;can syncronize &lt;br&gt;to public hubs"],["$$ @ GitHub","by Default","No","Largest Available"]],"container":"<table class=\"display\">\n  <thead>\n    <tr>\n      <th>Category<\/th>\n      <th>Duke's GitLab<\/th>\n      <th>Public Hubs<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"dom":"t","order":[],"autoWidth":false,"orderClasses":false,"rowCallback":"function(row, data) {\nvar value=data[2]; $(this.api().cell(row, 2).node()).css({'background-color':'lightblue'});\nvar value=data[1]; $(this.api().cell(row, 1).node()).css({'font-weight':'bold','color':'silver','background-color':'navy'});\n}"}},"evals":["options.rowCallback"],"jsHooks":[]}</script>
+<div id="htmlwidget-a6d0766a8c6ec4c7ab15" style="width:100%;height:auto;" class="datatables html-widget"></div>
+<script type="application/json" data-for="htmlwidget-a6d0766a8c6ec4c7ab15">{"x":{"filter":"none","data":[["Private Repo","Public Repo","Duke NetId","User Community"],["by Default","Yes","Yes","Duke University -- &lt;br&gt;can syncronize &lt;br&gt;to public hubs"],["$$ @ GitHub","by Default","No","Largest Available"]],"container":"<table class=\"display\">\n  <thead>\n    <tr>\n      <th>Category<\/th>\n      <th>Duke's GitLab<\/th>\n      <th>Public Hubs<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"dom":"t","order":[],"autoWidth":false,"orderClasses":false,"rowCallback":"function(row, data) {\nvar value=data[2]; $(this.api().cell(row, 2).node()).css({'background-color':'lightblue'});\nvar value=data[1]; $(this.api().cell(row, 1).node()).css({'font-weight':'bold','color':'silver','background-color':'navy'});\n}"}},"evals":["options.rowCallback"],"jsHooks":[]}</script>
 
 Public Hubs are defined as GitHub, BitBucket, and the public GitLab.
 
 ---
+exclude: true
 class: softblue, middle, center
 
 ## Markdown
@@ -415,7 +426,15 @@
 
 Turn scripts into reproducible reports
 
+
+---
+class: softblue, middle, center
+
+## Markdown
+
 ---
+
+
 class: bottom
 background-image: url(images/rmarkdown.png)
 
@@ -483,6 +502,7 @@
 ]
 
 ---
+exclude: true
 class: orange, middle, center
 
 ## **Literate Code** 
@@ -503,6 +523,7 @@
 
 
 ---
+exclude: true
 class: softblue, middle, center
 
 ## RStudio &amp; Git
@@ -515,7 +536,7 @@
 - Version Control, via Git, orchestrated by RStudio
 
 ---
-
+exclude: true
 ## Orchestrating with RStudio
 
 - Masks the CLI
@@ -538,6 +559,14 @@
 slide:  8, (9), 27
 
 ---
+class: middle, center
+
+## Hands-on
+
+[Excercise](../handson.html)
+
+---
+exclude: true
 class: orange
 ## R/RStudio 
 
@@ -559,6 +588,7 @@
 ## Why R
 
 ---
+exclude: true
 class: orange
 ## Reproducibility
 

docs/slides/libs/remark-css-0.0.1/example.css

@@ -83,12 +83,19 @@ class: middle
     - Alternative:  GitKracken (if you have the [GitHub Student](https://education.github.com/pack) Pack)
     - Alternative:  [SourceTree](https://www.sourcetreeapp.com/) (defaults with [BitBucket](https://bitbucket.org/))
 
+---
+class: middle
+
+# Part 2:  Social Coding
+
+- GitHub (especially with Student Pack)
+- GitLab (OIT instance) 
+- Bitbucket.org or GitLab.com 
 
-- **Social Coding**
+---
+class: middle, center, softblue
 
-    - GitHub (especially with Student Pack)
-    - GitLab (OIT instance) 
-    - Bitbucket.org or GitLab.com 
+# Reproducibility
 
 ---
 class: middle
@@ -117,6 +124,38 @@ The most basic aspect of **reproducible research** is that **everything you do**
 
 Goal:  Compose a Reproducible Document **in RStudio**
 
+---
+class: middle, center
+
+Avoid
+
+## Idiosyncratic Critical Steps 
+
+so your processes **are not** reduced to
+
+## Weird Bits of Undocumented Manual Magic
+
+???
+
+For Example...
+
+1. Create Summary **Table in STATA**
+
+2. **Copy** Table to MS **Excel**
+
+3. **Format Table** for readability in Excel
+
+4. Generate **Visualizations** in Excel
+
+5. Integrate Excel Table into **Word > PDF**
+
+
+---
+class: middle, center, softblue
+
+# Version Control
+
+
 ---
 class:  middle, center
 
@@ -135,30 +174,20 @@ class:  middle, center
 ![](images/git_workflow_adv.png)
 ???
 Collaboration adds complexity the but the basic git commands are the same.
----
-class: middle, center
-
-Avoid
-
-## Idiosyncratic Critical Steps 
-
-so your processes **are not** reduced to
-
-## Weird Bits of Undocumented Manual Magic
 
-???
 
-For Example...
+---
+class:  middle, center
 
-1. Create Summary **Table in STATA**
+![](images/git_push_pull.png)
 
-2. **Copy** Table to MS **Excel**
 
-3. **Format Table** for readability in Excel
+---
+class:  middle, center
+background-size: contain
 
-4. Generate **Visualizations** in Excel
+![](images/git_add_commit.png)
 
-5. Integrate Excel Table into **Word > PDF**
 ---
 exclude: true
 ## Outline
@@ -235,11 +264,6 @@ By this I simply mean **version control on a personal level**.  Once can "branch
 
 **Git** can be used to **track any files**. 
 
----
-class: bottom, right
-background-image:  url(images/git_push_pull.png)
-
-
 ---
 exclude: true
 class: center, middle, softblue