Merge branch 'master' into dev

Author: khoroshevskyi

.github/pull_request_template.md

@@ -0,0 +1,7 @@
+## Changes:
+- ...
+
+
+## TODO:
+- [ ] Version of pepdbagent updated in `__version__.py` file
+- [ ] Changelog updated

bedhost/_version.py

@@ -1 +1 @@
-__version__ = "0.10.2"
+__version__ = "0.10.3"

bedhost/routers/bedset_api.py

@@ -195,7 +195,7 @@ async def get_trackDb_file_bedset(bedset_id: str):
 
 
 @router.post(
-    "/create/",
+    "/create",
     description="Create a new bedset by providing registry path to the PEPhub project",
 )
 async def create_bedset(bedset: CreateBEDsetRequest):

deployment/config/api.bedbase.org.yaml

@@ -9,7 +9,7 @@ database:
   port: 5432
   password: $POSTGRES_PASSWORD
   user: $POSTGRES_USER
-  database: bedbase2
+  database: bedbase
 qdrant:
   host: $QDRANT_HOST
   port: 6333
@@ -32,7 +32,8 @@ access_methods:
   http:
     type: "https"
     description: HTTP compatible path
-    prefix: https://data2.bedbase.org/
+    #    prefix: https://data2.bedbase.org/
+    prefix: https://api.bedbase.org/v1/files/
   s3:
     type: "s3"
     description: S3 compatible path

requirements/requirements-all.txt

@@ -1,5 +1,5 @@
 # bbconf @ git+https://github.com/databio/bbconf.git@dev#egg=bbconf
-bbconf>=0.11.0
+bbconf>=0.11.2
 fastapi>=0.103.0
 logmuse>=0.2.7
 markdown

ui/bedbase-types.d.ts

@@ -691,7 +691,7 @@ export interface paths {
         patch?: never;
         trace?: never;
     };
-    "/v1/bedset/create/": {
+    "/v1/bedset/create": {
         parameters: {
             query?: never;
             header?: never;