source commit: 81e1859

Author: actions-user

CITATION.md

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+# CITATION
+
+
+``` warning
+Warning in system("update-copyright.py"): error in running command
+```
+
+## Data
+
+Data is from the paper S. K. Morgan Ernest, Thomas J. Valone, and James
+H. Brown. 2009. Long-term monitoring and experimental manipulation of a
+Chihuahuan Desert ecosystem near Portal, Arizona, USA. Ecology 90:1708.
+
+[http://esapubs.org/archive/ecol/E090/118/](http://esapubs.org/archive/ecol/E090/118/)
+
+A simplified version of this data, suitable for teaching is available on
+[figshare](https://doi.org/10.6084/m9.figshare.1314459.v5).
+
+## Lessons
+
+The first workshop was run at NESCent on May 8-9, 2014 with the development and
+instruction of lessons by Karen Cranston, Hilmar Lapp, Tracy Teal, and Ethan
+White and contributions from Deb Paul and Mike Smorul.
+
+Original materials adapted from SWC Python lessons by Sarah Supp. John Blischak
+led the continued development of materials with contributions from Gavin
+Simpson, Tracy Teal, Greg Wilson, Diego Barneche, Stephen Turner, and Karthik
+Ram. This original material has been modified and expanded by François
+Michonneau.
+
+The **`dplyr`** lesson was created by Kara Woo, who copied and modified and
+modified from Jeff
+Hollister's [materials](https://usepa.github.io/introR/2015/01/14/03-Clean/).
+
+The **`ggplot2`** lesson was initially created by Mateusz Kuzak, Diana Marek,
+and Hedi Peterson, during a Hackathon in Espoo, Finland on March 16-17, 2015,
+sponsored by the [ELIXIR project](https://elixir-europe.org/).
+
+You can cite this Data Carpentry lesson as follow:
+
+
+``` warning
+Warning in file(con, "r"): cannot open file 'AUTHORS': No such file or
+directory
+```
+
+``` error
+Error in file(con, "r"): cannot open the connection
+```
+
+or as a BibTeX entry:
+
+
+``` warning
+Warning in file(con, "r"): cannot open file 'AUTHORS': No such file or
+directory
+```
+
+``` error
+Error in file(con, "r"): cannot open the connection
+```
+
+

CODE_OF_CONDUCT.md

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+# The Carpentries Code of Conduct
+
+As contributors and maintainers of this project, we pledge to follow the [Carpentry Code of Conduct][coc].
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by following our [reporting guidelines][coc-reporting].
+
+[coc-reporting]: https://docs.carpentries.org/policies/coc/incident-reporting.html
+[coc]: https://docs.carpentries.org/policies/coc/

LICENSE.md

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+---
+title: "Licenses"
+---
+
+## Instructional Material
+
+All Carpentries (Software Carpentry, Data Carpentry, and Library Carpentry)
+instructional material is made available under the [Creative Commons
+Attribution license][cc-by-human]. The following is a human-readable summary of
+(and not a substitute for) the [full legal text of the CC BY 4.0
+license][cc-by-legal].
+
+You are free:
+
+- to **Share**---copy and redistribute the material in any medium or format
+- to **Adapt**---remix, transform, and build upon the material
+
+for any purpose, even commercially.
+
+The licensor cannot revoke these freedoms as long as you follow the license
+terms.
+
+Under the following terms:
+
+- **Attribution**---You must give appropriate credit (mentioning that your work
+  is derived from work that is Copyright (c) The Carpentries and, where
+  practical, linking to <https://carpentries.org/>), provide a [link to the
+  license][cc-by-human], and indicate if changes were made. You may do so in
+  any reasonable manner, but not in any way that suggests the licensor endorses
+  you or your use.
+
+- **No additional restrictions**---You may not apply legal terms or
+  technological measures that legally restrict others from doing anything the
+  license permits.  With the understanding that:
+
+Notices:
+
+* You do not have to comply with the license for elements of the material in
+  the public domain or where your use is permitted by an applicable exception
+  or limitation.
+* No warranties are given. The license may not give you all of the permissions
+  necessary for your intended use. For example, other rights such as publicity,
+  privacy, or moral rights may limit how you use the material.
+
+## Software
+
+Except where otherwise noted, the example programs and other software provided
+by The Carpentries are made available under the [OSI][osi]-approved [MIT
+license][mit-license].
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this software and associated documentation files (the "Software"), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+of the Software, and to permit persons to whom the Software is furnished to do
+so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+
+## Trademark
+
+"The Carpentries", "Software Carpentry", "Data Carpentry", and "Library
+Carpentry" and their respective logos are registered trademarks of
+[The Carpentries, Inc.][carpentries].
+
+[cc-by-human]: https://creativecommons.org/licenses/by/4.0/
+[cc-by-legal]: https://creativecommons.org/licenses/by/4.0/legalcode
+[mit-license]: https://opensource.org/licenses/mit-license.html
+[carpentries]: https://carpentries.org
+[osi]: https://opensource.org

config.yaml

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+#------------------------------------------------------------
+# Values for this lesson.
+#------------------------------------------------------------
+
+# Which carpentry is this (swc, dc, lc, or cp)?
+# swc: Software Carpentry
+# dc: Data Carpentry
+# lc: Library Carpentry
+# cp: Carpentries (to use for instructor training for instance)
+# incubator: The Carpentries Incubator
+carpentry: 'dc'
+
+# Overall title for pages.
+title: 'Data Analysis and Visualization in R for Ecologists'
+
+# Date the lesson was created (YYYY-MM-DD, this is empty by default)
+created: '2015-04-02'
+
+# Comma-separated list of keywords for the lesson
+keywords: 'ggplot2, tidyverse, data-visualization, data-visualisation, data-wrangling, data-carpentry, R'
+
+# Life cycle stage of the lesson
+# possible values: pre-alpha, alpha, beta, stable
+life_cycle: 'stable'
+
+# License of the lesson
+license: 'CC-BY 4.0'
+
+# Link to the source repository for this lesson
+source: 'https://github.com/datacarpentry/R-ecology-lesson'
+
+# Default branch of your lesson
+branch: 'main'
+
+# Who to contact if there are any issues
+contact: '[email protected]'
+
+# Navigation ------------------------------------------------
+#
+# Use the following menu items to specify the order of
+# individual pages in each dropdown section. Leave blank to
+# include all pages in the folder.
+#
+# Example -------------
+#
+# episodes:
+# - introduction.md
+# - first-steps.md
+#
+# learners:
+# - setup.md
+#
+# instructors:
+# - instructor-notes.md
+#
+# profiles:
+# - one-learner.md
+# - another-learner.md
+
+# Order of episodes in your lesson
+episodes:
+- introduction-r-rstudio.Rmd
+- visualizing-ggplot.Rmd
+- how-r-thinks-about-data.Rmd
+- working-with-data.Rmd
+
+# Information for Learners
+learners:
+- reference.md
+
+# Information for Instructors
+instructors:
+- instructor-notes.md
+
+# Learner Profiles
+profiles:
+
+# Customisation ---------------------------------------------
+#
+# This space below is where custom yaml items (e.g. pinning
+# sandpaper and varnish versions) should live
+
+url: 'https://datacarpentry.org/R-ecology-lesson'
+analytics: carpentries
+lang: en
+