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Thinh Nguyen
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Merge pull request #14 from davidgodinez/master
Add paired `jupytext` scripts and fixed typos
2 parents 0ede5d1 + a72a9bf commit 1acc809

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01-DataJoint Basics - Interactive.ipynb

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"metadata": {},
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"source": [
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"> * Your lab houses many mice, and each mouse is identified by a unique ID. You also want to keep track of information about each mouse such as their date of birth, and gender.\n",
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"> * As a hard working neuroscientist, you perform experiments every day, sometimes working with more than one mouse in a day! However, on an any given day, a mouse undergoes at most one recording session.\n",
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"> * As a hard working neuroscientist, you perform experiments every day, sometimes working with more than one mouse in a day! However, on any given day, a mouse undergoes at most one recording session.\n",
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"> * For each experimental session, you would like to record what mouse you worked with and when you performed the experiment. You would also like to keep track of other helpful information such as the experimental setup you worked on. \n",
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"\n",
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"> * In a session of electrophysiology\n",
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"cell_type": "markdown",
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"metadata": {},
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"In the current notebook, we will design the tables for mouse and experimental sessions, the rest of the pipeline will be designed in the subdirectory `electrophysioloy` and `calcium_imaging`"
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"In the current notebook, we will design the tables for mouse and experimental sessions, the rest of the pipeline will be designed in the subdirectory `electrophysiology` and `calcium_imaging`"
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]
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{
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"cell_type": "markdown",
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"metadata": {},
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"We will introduce three major types of queries used in DataJoint:\n",
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"We will introduce four major types of queries used in DataJoint:\n",
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"* restriction (`&`) and negative restriction (`-`): filter data\n",
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"* join (`*`): bring fields from different tables together\n",
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"* projection (`.proj()`): focus on a subset of attributes\n",
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"cell_type": "markdown",
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"metadata": {},
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"Let's find all mouse that **is not male** AND **born after 2017-01-01**."
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"Let's find all mice that **are not male** AND **born after 2017-01-01**."
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]
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{
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"cell_type": "markdown",
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"metadata": {},
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"All mice that has a session"
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"All mice that have a session"
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]
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{
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}
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],
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"metadata": {
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"jupytext": {
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"formats": "ipynb,py:light"
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},
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"kernelspec": {
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"display_name": "Python 3",
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"display_name": "workflow-array-ephys",
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"language": "python",
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"name": "python3"
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"name": "workflow-array-ephys"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.7.3"
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"version": "3.9.4"
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}
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},
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"nbformat": 4,

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