Skip to content

Commit 94b4ca0

Browse files
committed
Revert "Clarify the reference to the name of "tif" images"
This reverts commit 85dd9fc.
1 parent 4893b8f commit 94b4ca0

File tree

1 file changed

+30
-1
lines changed

1 file changed

+30
-1
lines changed

tutorials/02-Calcium Imaging Imported Tables.ipynb

Lines changed: 30 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -57,7 +57,36 @@
5757
"cell_type": "markdown",
5858
"metadata": {},
5959
"source": [
60-
"Now we would like to continue working with the tables we defined in the previous notebook. To do so, we would need the classes for each table: `Mouse` and `Session`. We can either redefine it here, but for your convenience, we have included the schema and table class definitions in a package called `tutorial_pipeline.mouse_session`, from which you can import the classes as well as the schema object. We will use the schema object again to define more tables."
60+
"## Calcium imaging dataset"
61+
]
62+
},
63+
{
64+
"cell_type": "markdown",
65+
"metadata": {},
66+
"source": [
67+
"In the `data` folder in this repository, you will find a small dataset of three different calcium imaging scans:\n",
68+
"\n",
69+
"- `/workspaces/datajoint-tutorials/data/example_scan_02.tif`\n",
70+
"- `/workspaces/datajoint-tutorials/data/example_scan_03.tif`\n",
71+
"- `/workspaces/datajoint-tutorials/data/example_scan_01.tif`\n",
72+
"\n",
73+
"As you might know, calcium imaging scans (raw data) are stored as *.tif* files. \n",
74+
"\n",
75+
"*NOTE: For this tutorial there is no need to deeply explore this dataset. Nevertheless, if you are curious about visualizing these example scans, we recommend you to open the TIFF with [ImageJ](https://imagej.nih.gov/ij/download.html).*"
76+
]
77+
},
78+
{
79+
"cell_type": "markdown",
80+
"metadata": {},
81+
"source": [
82+
"## First steps of the pipeline design: Schema, Mouse & Session"
83+
]
84+
},
85+
{
86+
"cell_type": "markdown",
87+
"metadata": {},
88+
"source": [
89+
"DataJoint pipelines commonly start with tables for `Mouse` and `Session`. Let's quickly create these tables based on what we learned in the previous session:"
6190
]
6291
},
6392
{

0 commit comments

Comments
 (0)