bugfix in triggering pykilosort

Author: Thinh Nguyen

element_array_ephys/ephys_no_curation.py

@@ -591,6 +591,7 @@ def make(self, key):
 
                 # add additional probe-recording and channels details into `params`
                 params = {**params, **get_recording_channels_details(key)}
+                params['fs'] = params['sample_rate']
 
                 if acq_software == 'SpikeGLX':
                     spikeglx_meta_filepath = get_spikeglx_meta_filepath(key)

element_array_ephys/readers/kilosort_triggering.py

@@ -404,7 +404,7 @@ def run_pykilosort(continuous_file, kilosort_output_directory, params,
 
     probe = pykilosort.Bunch()
     channel_count = len(channel_ind)
-    probe.Nchan = channel_count
+    probe.NchanTOT = channel_count
     probe.chanMap = np.arange(0, channel_count, dtype='int')
     probe.xc = x_coords
     probe.yc = y_coords