bugfix QC ingestion

Thinh Nguyen · Thinh Nguyen · commit 2d76efcccb4f · 2022-09-29T16:30:11.000-05:00
diff --git a/element_array_ephys/ephys_acute.py b/element_array_ephys/ephys_acute.py
@@ -945,6 +945,7 @@ def make(self, key):
 
         metrics_df = pd.read_csv(metric_fp)
         metrics_df.set_index('cluster_id', inplace=True)
+        metrics_df.replace([np.inf, -np.inf], np.nan, inplace=True)
 
         metrics_list = [
             dict(metrics_df.loc[unit_key['unit']], **unit_key)
diff --git a/element_array_ephys/ephys_chronic.py b/element_array_ephys/ephys_chronic.py
@@ -890,6 +890,7 @@ def make(self, key):
 
         metrics_df = pd.read_csv(metric_fp)
         metrics_df.set_index('cluster_id', inplace=True)
+        metrics_df.replace([np.inf, -np.inf], np.nan, inplace=True)
 
         metrics_list = [
             dict(metrics_df.loc[unit_key['unit']], **unit_key)
diff --git a/element_array_ephys/ephys_no_curation.py b/element_array_ephys/ephys_no_curation.py
@@ -904,6 +904,7 @@ def make(self, key):
 
         metrics_df = pd.read_csv(metric_fp)
         metrics_df.set_index('cluster_id', inplace=True)
+        metrics_df.replace([np.inf, -np.inf], np.nan, inplace=True)
 
         metrics_list = [
             dict(metrics_df.loc[unit_key['unit']], **unit_key)
