Merge remote-tracking branch 'upstream/main' into dev_new_main

Author: ttngu207

.github/workflows/devcontainer-build-publish-caller.yml

@@ -0,0 +1,10 @@
+name: devcontainer_build_publish
+on:
+  workflow_dispatch:
+
+jobs:
+  call_devcontainer_build_publish:
+    uses: datajoint/.github/.github/workflows/devcontainer-build-publish.yaml@main
+    secrets:
+      DOCKERHUB_USERNAME: ${{secrets.DOCKERHUB_USERNAME}}
+      DOCKERHUB_TOKEN: ${{secrets.DOCKERHUB_TOKEN_FOR_ELEMENTS}}

.github/workflows/mkdocs-release-caller.yml

@@ -0,0 +1,9 @@
+name: mkdocs-release
+on:
+  workflow_dispatch:
+
+jobs:
+  mkdocs_release:
+    uses: datajoint/.github/.github/workflows/mkdocs_release.yaml@main
+    permissions: 
+      contents: write

.github/workflows/semantic-release-caller.yml

@@ -0,0 +1,10 @@
+name: semantic-release
+on:
+  workflow_dispatch:
+
+jobs:
+  call_semantic_release:
+    uses: datajoint/.github/.github/workflows/semantic-release.yaml@main
+    secrets:
+      APP_ID: ${{ secrets.ELEMENT_APP_ID }}
+      GET_TOKEN_KEY: ${{ secrets.ELEMENT_GET_TOKEN_KEY }}

CHANGELOG.md

@@ -177,10 +177,7 @@ def auto_generate_entries(cls, session_key):
                     "probe_type": spikeglx_meta.probe_model,
                     "probe": spikeglx_meta.probe_SN,
                 }
-                if (
-                    probe_key["probe"] not in [p["probe"] for p in probe_list]
-                    and probe_key not in probe.Probe()
-                ):
+                if probe_key["probe"] not in [p["probe"] for p in probe_list]:
                     probe_list.append(probe_key)
 
                 probe_dir = meta_filepath.parent
@@ -204,10 +201,7 @@ def auto_generate_entries(cls, session_key):
                     "probe_type": oe_probe.probe_model,
                     "probe": oe_probe.probe_SN,
                 }
-                if (
-                    probe_key["probe"] not in [p["probe"] for p in probe_list]
-                    and probe_key not in probe.Probe()
-                ):
+                if probe_key["probe"] not in [p["probe"] for p in probe_list]:
                     probe_list.append(probe_key)
                 probe_insertion_list.append(
                     {

element_array_ephys/ephys.py

@@ -96,15 +96,15 @@ def get_channel_bit_volts(self, band="ap"):
                 dataVolts = dataInt * Vmax / Imax / gain
         """
         vmax = float(self.apmeta.meta["imAiRangeMax"])
+        imax = self.apmeta.meta.get("imMaxInt")
+        imax = float(imax) if imax else IMAX[self.apmeta.probe_model]
 
         if band == "ap":
-            imax = IMAX[self.apmeta.probe_model]
             imroTbl_data = self.apmeta.imroTbl["data"]
             imroTbl_idx = 3
             chn_ind = self.apmeta.get_recording_channels_indices(exclude_sync=True)
 
         elif band == "lf":
-            imax = IMAX[self.lfmeta.probe_model]
             imroTbl_data = self.lfmeta.imroTbl["data"]
             imroTbl_idx = 4
             chn_ind = self.lfmeta.get_recording_channels_indices(exclude_sync=True)

element_array_ephys/readers/spikeglx.py

@@ -1,3 +1,3 @@
 """Package metadata."""
 
-__version__ = "1.0.0"
+__version__ = "4.0.0"