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1 parent 5d967c4 commit b40d5bcCopy full SHA for b40d5bc
workflow/Snakefile
@@ -27,7 +27,7 @@ rule skat_test:
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shell:
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"""
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export PATH=$PATH:{params.plink_path}
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- seq 1 22 | parallel -j {threads} --verbose Rscript scripts/skat.R {params.genotype} {input.gene_regions} {input.merged_weights} {params.genotype_path} {params.weights_source} {{}} {params.is_binary}
+ seq 1 22 | parallel {threads} --verbose Rscript scripts/skat.R {params.genotype} {input.gene_regions} {input.merged_weights} {params.genotype_path} {params.weights_source} {{}} {params.is_binary}
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# # Rule 4: Merge SKAT Chromosome Results into zone
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rule merge_skat_results:
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