Merge branch 'master' into develop

Author: davidfrantz

.github/workflows/codeql-analysis.yml

@@ -0,0 +1,70 @@
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ master ]
+  schedule:
+    - cron: '17 4 * * 6'
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ubuntu-latest
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'cpp', 'python' ]
+        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
+        # Learn more about CodeQL language support at https://git.io/codeql-language-support
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v2
+
+    # Initializes the CodeQL tools for scanning.
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v1
+      with:
+        languages: ${{ matrix.language }}
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+        # queries: ./path/to/local/query, your-org/your-repo/queries@main
+
+    # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v1
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 https://git.io/JvXDl
+
+    # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
+    #    and modify them (or add more) to build your code if your project
+    #    uses a compiled language
+
+    #- run: |
+    #   make bootstrap
+    #   make release
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v1

Makefile

@@ -24,7 +24,7 @@
 # Modify the following lines to match your needs
 
 # Installation directory
-BINDIR=/develop
+BINDIR=/usr/local/bin
 
 # Libraries
 GDAL=-I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib

docs/source/refs-applied.rst

@@ -28,6 +28,9 @@ This list summarizes all scientific publications that have used FORCE. If you ha
   | J. Kreyling, F. Tanneberger, F. Jansen, S. van der Linden, C. Aggenbach, V. Blüml, J. Couwenberg, W-J Emsens, H. Joosten, A. Klimkowska, W. Kotowski, L. Kozub, B. Lennartz, Y. Liczner, H. Liu, D. Michaelis, C. Oehmke, K. Parakenings, E. Pleyl, A. Poyda, S. Raabe, M. Röhl, K. Rücker, A. Schneider, J. Schrautzer, C. Schröder, F. Schug, E. Seeber, F. Thiel, S. Thiele, B. Tiemeyer, T. Timmermann, T. Urich, R. van Diggelen, K. Vegelin, E. Verbruggen, M. Wilmking, N. Wrage-Mönnig, L. Wołejko, D. Zak, and G. Jurasinski (2021): Rewetting does not return drained fen peatlands to their old selves. Nature Communications 12, 5693.
   | https://doi.org/10.1038/s41467-021-25619-y
 
+  | F. Lobert, A.-K. Holtgrave, M. Schwieder, M. Pause, J. Vogt, A. Gocht, and S. Erasmi (2021): Mowing event detection in permanent grasslands: Systematic evaluation of input features from Sentinel-1, Sentinel-2, and Landsat 8 time series. Remote Sensing of Environment 267, 112751.
+  | https://doi.org/10.1016/j.rse.2021.112751
+  
   | A. Okujeni, C. Jänicke, S. Cooper, D. Frantz, P. Hostert, M. Clark, K. Segl, and S. van der Linden (2021): Multi-season unmixing of vegetation class fractions across diverse Californian ecoregions using simulated spaceborne imaging spectroscopy data. Remote Sensing of Environment 264, 112558.
   | https://doi.org/10.1016/j.rse.2021.112558