Commit 1bea8dd
Refactor: EXX PW Code Structure (#6431)
* feat pexsi
* fix : diag not completed
* feat
* feat: pexsi hsolver
* CMake building implemented
* Works
* adapt to the new container
* Turn off USE_PEXSI
* Update LibRI to 553c91c
* modify include files
* namespace-ize
* new inputs added
* Configure Makefile Compiling, fix typos
* Fix Makefile Intel toolchains compile errors
* Fix even more PEXSI related Makefile compiling issues
* Modify inputs and update to latest version (#2)
* run INPUT.Default() in every process in InputParaTest (#3490)
Co-authored-by: kirk0830 <[email protected]>
* add blas support for FindLAPACK.cmake (#3497)
* more unittest of QO: towards orbital selection (#3499)
* Fix: fix bug in mulliken charge calculation (#3503)
* fix phase
* fix case test
* Refactor: namespace Conv_Coulomb_Pot_K (#3446)
* Refactor: namespace Conv_Coulomb_Pot_K
* Refactor: namespace Conv_Coulomb_Pot_K
---------
Co-authored-by: wqzhou <[email protected]>
* enable the computation of all zeros in one function call (#3449)
Co-authored-by: wqzhou <[email protected]>
* replace ios.eof() by ios.good() to avoid meeting badbit and failbit in reading STRU (#3506)
* Build: add ccache to accelerate the testing process (#3509)
* Build: add ccache to accelerate the testing process
* Update test.yml
* Update test.yml
* Update test.yml
* Docs: to avoid the misunderstanding in docs (#3518)
* to avoid the misunderstanding in docs
* Update docs/quick_start/hands_on.md
Co-authored-by: Chun Cai <[email protected]>
---------
Co-authored-by: Chun Cai <[email protected]>
* Docs: fix a missing depencency in conda build env (#3508)
* Feature: Add ENABLE_RAPIDJSON option to control the output of abacus.json (#3519)
Add ENABLE_RAPIDJSON option to control the output of abacus.json
* Feature: add python wrapper for math sphbes (#3475)
* recommit for review
* add python wrapper
* remove timer since performace tests add
* Feature: support segment split in kline mode in KPT file and `out_band` band output precision control, `8` as default (#3493)
* add precision control
* correct serial version of nscf_band function
* fix issue 3482
* update unit and integrated test
* update document
* correct unittest and make compatible with false and true
* fix: bug in Autotest.sh when result.ref has no totaltimeref (#3523)
* Fix : unit test of module_xc (#3524)
* Fix: omit small magnetic moments to avoid numerical instability (#3530)
* update deltalambda
* avoid numerical error in orbMulP
* add constrain on Mi
* change case reference value
* Fix: fix multiple compiler warnings (#3515)
* Fix: add noreturn attribute to warning_quit
* Add type conversion
* fix string literal
* fix small number trunctuation
* Fix system call returned value not checked
* fix missing braket
* Refactor parameter_pool.cpp and parameter_pool.h
* remove duplicated return statements
* Change WARNING_QUIT occurances in tests
* Add warning message to help debug UT
* output the default precision flag (#3496)
Co-authored-by: kirk0830 <[email protected]>
* Build: Improving CMake performance for finding LibXC and ELPA (#3478)
* Fix for finding LibXC and ELPA
* For compatibility to previous routines
* syntax fix for FindELPA.cmake
* Update cmake/FindELPA.cmake
Co-authored-by: Chun Cai <[email protected]>
* Using CMake interface as default for finding LibXC
* update docs
* fix for FindLibxc: changing imcompatible if statement
* fix for FindLibxc: changing imcompatible if statement
* fix for FindLibxc: changing imcompatible if statement
* update docs for installing pkg-config
* Update FindLibxc.cmake
* Update FindLibxc.cmake
* remove previous LibXC routine in CMakeLists.txt
Co-authored-by: Chun Cai <[email protected]>
* Update easy_install.md with Makefile-built LibXC supported
* Update easy_install.md to include different behavior in different version on finding ELPA
---------
Co-authored-by: Chun Cai <[email protected]>
* Docs: correct some docs about mp2 smearing method (#3533)
* correct some docs about mp2 smearing method
* add docs about mv method
* Feature : printing band density (#3501)
Co-authored-by: wenfei-li <[email protected]>
Co-authored-by: wqzhou <[email protected]>
* add some docs for PR#3501 (#3537)
* Feature: enable restart charge density mixing during SCF (#3542)
* add a new parameter mixing_restart
* do not update rho if iter==mixing_restart
* do not update rho if iter==mixing_restart-1
* reset mix and rho_mdata if iter==mixing_restart
* fix SCF exit directly since drho=0 if iter=GlobalV::MIXING_RESTART
* re-set_mixing in eachiterinit for PW and LCAO
* enable SCF restarts in esolver_ks::RUN
* add some UnitTests
* add some Docs
* new inputs added
* Update input-main.md (#3551)
Solve the format problem mentioned in issue 3543
* Build: fix compatibility issue against toolchain install (#3540)
* Fix for finding LibXC and ELPA
* For compatibility to previous routines
* syntax fix for FindELPA.cmake
* Update cmake/FindELPA.cmake
Co-authored-by: Chun Cai <[email protected]>
* Using CMake interface as default for finding LibXC
* update docs
* fix for FindLibxc: changing imcompatible if statement
* fix for FindLibxc: changing imcompatible if statement
* fix for FindLibxc: changing imcompatible if statement
* update docs for installing pkg-config
* Update FindLibxc.cmake
* Update FindLibxc.cmake
* remove previous LibXC routine in CMakeLists.txt
Co-authored-by: Chun Cai <[email protected]>
* Update easy_install.md with Makefile-built LibXC supported
* Update easy_install.md to include different behavior in different version on finding ELPA
* fix compatibility issue against toolchain
* Change default ELPA install routine to old one
---------
Co-authored-by: Chun Cai <[email protected]>
* Test: Configure performance tests for math libraries (#3511)
* add performace test of sphbes functions.
* fix benchmark cmake errors
* add dependencies for docker
* update docs
* add performance tests for sphbes
* add google benchmark
* rewrite benchmark tests in fixtures
* disable internal testing in benchmark
* merge benchmark into integration test
---------
Co-authored-by: StarGrys <[email protected]>
* Configure Makefile Compiling, fix typos
* Fix Makefile Intel toolchains compile errors
* Fix even more PEXSI related Makefile compiling issues
* Update hsolver_pw.cpp (#3556)
when use_uspp==false, overlap matrix should be E.
* Fix: cuda build target (#3276)
* Fix: cuda buid target
* Update CMakeLists.txt
---------
Co-authored-by: Denghui Lu <[email protected]>
---------
Co-authored-by: wqzhou <[email protected]>
Co-authored-by: kirk0830 <[email protected]>
Co-authored-by: Haozhi Han <[email protected]>
Co-authored-by: Zhao Tianqi <[email protected]>
Co-authored-by: PeizeLin <[email protected]>
Co-authored-by: jinzx10 <[email protected]>
Co-authored-by: Chun Cai <[email protected]>
Co-authored-by: Peng Xingliang <[email protected]>
Co-authored-by: Jie Li <[email protected]>
Co-authored-by: Wenfei Li <[email protected]>
Co-authored-by: Denghui Lu <[email protected]>
Co-authored-by: YI Zeping <[email protected]>
Co-authored-by: wenfei-li <[email protected]>
Co-authored-by: jingan-181 <[email protected]>
Co-authored-by: StarGrys <[email protected]>
Co-authored-by: Haozhi Han <[email protected]>
* Revert "Modify inputs and update to latest version"
* Update FindPEXSI.cmake to fix Comments
* Fix CI errors
* Fix CI Errors and Merge with Upstream
* Resolve Pull Request Reviews
* Fix parallel communication related issue
* Fix vars in Makefile.vars, add input tests and comments for pexsi vars
* Fix nspin > 1 cases
* Improvement: take calculated mu as new initial guess, may slightly improve performance
* Fix mistakes in the last commit
* Fix: params and features
- set default pexsi_temp
- fix md in pexsi
* fix empty lines
* Fix: move params to pexsi_solver, rename USE_PEXSI to ENABLE_PEXSI
* Docs: added docs for pexsi inputs
* Fix unit test issues in input_conv
* Change default pexsi_npole from 80 to 40
* Place pexsi_EDM in DensityMatrix, set size of pexsi_dm = 1 when GlobalV::NSPIN==4, and add comments for dmToRho
* An unit test added for DiagoPexsi
* modify for changed gint interface
* correct nspin related behaviors
* add efermi passthrough
* Revert "add efermi passthrough"
This reverts commit d7b402d.
* commits to resolve conversations related to codes
* DM and EDM pointers in pexsi now handled by diagopexsi, and copying h s matrices no longer needed
* add pexsi examples
* fix pexsi unit test (original version shouldn't run)
* add building docs for pexsi
* set cxx standard to c++14, which is required in make_unique
* Fix: Fix typo related to pexsi
* update to PPEXSIDFTDriver2
* default npoints to 1, so single core pexsi will work
* Fix Compile errors
* refactor to abandon `pdiagh`
* Fix mu_buffer and nspin
* Updates with latest
* Refactor: in ESolver_KS_PW, calculate deband in iter_finish, not in hamilt2density
* Fix: make files in consistent with upstream
* Refactor
* Refactor
* Refactor
* Refactor
* Refactor
* Refactor: fix unit test
* Refactor: fix unit test
* Refactor: fix unit test
* Refactor: fix unit test
* Refactor: Remove set kvec funcs in `K_Vectors`
* Refactor: Remove final_scf
* Refactor: Fix kvecc2d/d2c
* Fix: Tests
* Fix: Tests
* Fix: Tests
* Fix: Tests
* Refactor: Final?
* Fix
* Fix
* Fix
* Fix
* Fix: Compile Error on CUDA > 12.9
* Fix: Compile Error on CUDA > 12.9
* Feature: Support linear combination of coulomb_param for EXX PW
* Fix: Fix compile issue
* Uploading hybrid gauge tddft (#6369)
* hybrid gague
* update tests
* update
* update
* update
* update
* update unit test
* fix tests
* update tests
* fix read_wfc
* fix catch_properties.sh
* fix restart
* update gpu test
* update tests
* fix
* fix input_conv
* Improve md calculation stress output in running log (#6366)
* Improve md calculation stress output in running log
* Module_IO Unittest modify
* ModuleMD Unittests modify
* modify code comment in fire_test.cpp
* maintain setprecision(8) for md stress output
* Refactor: Remove redundant Input_para from ESolver Class (#6370)
* Refactor: Replace PARAM.inp with inp in ESolver classes for consistency
* Refactor: Replace local input parameters with PARAM.inp in ESolver classes for consistency
* Refactor: Use PARAM.inp.scf_ene_thr in ESolver_KS_LCAO iter_finish method
* Revert "Refactor: Use PARAM.inp.scf_ene_thr in ESolver_KS_LCAO iter_finish method"
This reverts commit b1bd0fd.
* Revert "Refactor: Replace local input parameters with PARAM.inp in ESolver classes for consistency"
This reverts commit f4f81e3.
* Fix: Fix memory leak introduced by new gint module (#6375)
* fix memory leak
* delete copy assignment
* refactor Exx_Opt_Orb (#6378)
Co-authored-by: linpz <[email protected]>
* Add use sw and fix Floating point exception (#6372)
* remove float error in sunway
* fix ig=0
* add the sw
* change the make_dir
* unify the gg use
* fix compile bug
* add init
* temporarily remove the sunway define
* add the pesduo
* fix compile bug
* fix bug in the betar
* modify the test
* Update the output formats of rt-TDDFT (#6381)
* update the output formats of rt-TDDFT
* update the output formats of rt-TDDFT
* fix a bug
* update initialized velocities
* found some output information is still lacking in MD module
* [Refactor] Rename grid to module_grid and genelpa to module_genelpa (#6386)
* Rename grid to module_grid
* Rename genelpa to module_genelpa
* Fix cmake
* Update the outputs of geometry relaxation (#6387)
* update the output formats of rt-TDDFT
* update the output formats of rt-TDDFT
* fix a bug
* update initialized velocities
* found some output information is still lacking in MD module
* update output information
* remove some global variables in relax_driver
* update outputs
* update relaxation outputs
* update relaxation output messages
* update tests of print info
* fix a test
* fix cg outputs
* udpate cg test
* update relax tests
* update LCAO output stress format
* change update_cell.cpp algorithm, when the ion move is larger than the cell length, it is fine to proceed the relaxation calculations
* fix tests for unitcells
* update cell
* Feature: support the output of matrix representation of symm_ops (#6390)
* Feature: support output the matrix representation of symmetry operation
* Feature: support the output of matrix representation of symm_ops
* update the document
* Feature: Output real space wavefunction and partial charge density when `device=gpu` (#6391)
* Fix GPU output of out_pchg and out_wfc_norm, out_wfc_re_im
* GPU integrate test is functional again
* Optimize RT-TDDFT dipole output (#6393)
* Perf: support GPU version of cal_force_cc with LCAO basis (#6392)
* support GPU version of cal_force_cc with LCAO basis
* fix a bug
* [Refactor] Move module_lr to source_lcao and add a new folder module_external in source_base (#6388)
* Move module_lr to source_lcao
* Fix test build
* Move blas_connector to module_external
* Fix header use
* Fix internal header use
* A fierce battle with Makefile😡
* Move blacs_connector.h to module_external
* Move lapack_connector.h and lapack_wrapper.h to module_external
* Fix header usage
* Move scalapack_connector.h to module_external
* Fix a bug for the output information after relaxation (#6395)
* update the output formats of rt-TDDFT
* update the output formats of rt-TDDFT
* fix a bug
* update initialized velocities
* found some output information is still lacking in MD module
* update output information
* remove some global variables in relax_driver
* update outputs
* update relaxation outputs
* update relaxation output messages
* update tests of print info
* fix a test
* fix cg outputs
* udpate cg test
* update relax tests
* update LCAO output stress format
* change update_cell.cpp algorithm, when the ion move is larger than the cell length, it is fine to proceed the relaxation calculations
* fix tests for unitcells
* update cell
* update some function names, update output A to Angstrom
* change eV/A to eV/Angstrom
* bump version to 3.9.0.10 (#6397)
Co-authored-by: Liang Sun <[email protected]>
* Fix: fix exx_gamma_extrapolation error in MPI
* Fix: fix exx_gamma_extrapolation error in MPI
* Update lapack.cu
* Fix: Integrate test
* Refactor
* Refactor
* Refactor
* Refactor
* Refactor
* Fix: conv
* Fix: conv hard code thr for now
* Fix: conv hard code thr for now
* Fix: conv hard code thr for now
* Fix: conv hard code thr for now
* Refactor
* Refactor
* Refactor
* Refactor
* Refactor
---------
Co-authored-by: zhangzhihao <[email protected]>
Co-authored-by: zhangzh-pku <[email protected]>
Co-authored-by: wqzhou <[email protected]>
Co-authored-by: kirk0830 <[email protected]>
Co-authored-by: Haozhi Han <[email protected]>
Co-authored-by: Zhao Tianqi <[email protected]>
Co-authored-by: PeizeLin <[email protected]>
Co-authored-by: jinzx10 <[email protected]>
Co-authored-by: Chun Cai <[email protected]>
Co-authored-by: Peng Xingliang <[email protected]>
Co-authored-by: Jie Li <[email protected]>
Co-authored-by: Wenfei Li <[email protected]>
Co-authored-by: Denghui Lu <[email protected]>
Co-authored-by: YI Zeping <[email protected]>
Co-authored-by: wenfei-li <[email protected]>
Co-authored-by: jingan-181 <[email protected]>
Co-authored-by: StarGrys <[email protected]>
Co-authored-by: Haozhi Han <[email protected]>
Co-authored-by: Mohan Chen <[email protected]>
Co-authored-by: HTZhao <[email protected]>
Co-authored-by: lanshuyue <[email protected]>
Co-authored-by: Liang Sun <[email protected]>
Co-authored-by: dzzz2001 <[email protected]>
Co-authored-by: linpeize <[email protected]>
Co-authored-by: linpz <[email protected]>
Co-authored-by: liiutao <[email protected]>
Co-authored-by: Mohan Chen <[email protected]>
Co-authored-by: Critsium <[email protected]>
Co-authored-by: Taoni Bao <[email protected]>
Co-authored-by: Chen Nuo <[email protected]>1 parent 3d1a861 commit 1bea8dd
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14 files changed
+897
-729
lines changed- source
- source_cell
- source_esolver
- source_io
- module_parameter
- source_pw/module_pwdft
- module_exx_helper
- operator_pw
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