Merge branch 'develop' into io_libxc_2

Author: PeizeLin

.github/workflows/version_check.yml

@@ -25,10 +25,10 @@ jobs:
       # Validate version.h matches the release tag
       - name: Assert version increment
         run: |
-          CODE_VERSION=$(grep -oP '#define\s+VERSION\s+"\K\d+(\.\d+){2,3}' source/version.h)
+          CODE_VERSION=$(grep -oP '#define\s+VERSION\s+"\K\d+(\.\d+){2,3}' source/source_main/version.h)
 
           if [[ -z "$CODE_VERSION" ]]; then
-            echo "::error::Failed to extract version from source/version.h"
+            echo "::error::Failed to extract version from source/source_main/version.h"
             exit 1
           fi
 

CMakeLists.txt

@@ -172,7 +172,7 @@ include_directories(${ABACUS_SOURCE_DIR}/module_base/module_container)
 set(CMAKE_CXX_STANDARD 11)
 set(CMAKE_CXX_STANDARD_REQUIRED ON)
 
-add_executable(${ABACUS_BIN_NAME} source/main.cpp)
+add_executable(${ABACUS_BIN_NAME} source/source_main/main.cpp)
 if(ENABLE_COVERAGE)
   add_coverage(${ABACUS_BIN_NAME})
 endif()

docs/CONTRIBUTING.md

@@ -57,7 +57,7 @@ For those who are interested in the source code, the following figure shows the
 |-- module_elecstate            The module for defining the electronic state and its operations.
 |   |-- module_charge           The module for calculating the charge density, charge mixing
 |   |-- potentials              The module for calculating the potentials, including Hartree, exchange-correlation, local pseudopotential, etc.
-|-- module_esolver              The module defining task-specific driver of corresponding workflow for evaluating energies, forces, etc., including lj, dp, ks, sdft, ofdft, etc.
+|-- source_esolver              The module defining task-specific driver of corresponding workflow for evaluating energies, forces, etc., including lj, dp, ks, sdft, ofdft, etc.
 |   |                           TDDFT, Orbital-free DFT, etc.
 |-- module_hamilt_general       The module for defining general Hamiltonian that can be used both in PW and LCAO calculations.
 |   |-- module_ewald            The module for calculating the Ewald summation.
@@ -77,7 +77,7 @@ For those who are interested in the source code, the following figure shows the
 |   |-- hamilt_pwdft            The module for defining the Hamiltonian in PW-DFT calculations.
 |   |   |-- operator_pw         The module for defining the operators in PW-DFT calculations.
 |   `-- hamilt_stodft           The module for defining the Hamiltonian in STODFT calculations.
-|-- module_hsolver              The module for solving the Hamiltonian with different diagonalization methods, including CG, Davidson in PW
+|-- source_hsolver              The module for solving the Hamiltonian with different diagonalization methods, including CG, Davidson in PW
 |   |                           calculations, and scalapack and genelpa in LCAO calculations.
 |-- module_io                   The module for reading of INPUT files and output properties including band structure, density of states, charge density, etc.
 |-- module_md                   The module for performing molecular dynamics.

docs/advanced/acceleration/cuda.md

@@ -12,7 +12,7 @@ In ABACUS, we provide the option to use GPU devices to accelerate performance. T
 
 - **Parallel strategy**: K point parallel.
 
-Unlike PW basis, only the grid integration module (module_gint) and the diagonalization of the Hamiltonian matrix (module_hsolver) have been implemented with GPU acceleration under LCAO basis.
+Unlike PW basis, only the grid integration module (module_gint) and the diagonalization of the Hamiltonian matrix (source_hsolver) have been implemented with GPU acceleration under LCAO basis.
 
 ## Required hardware/software
 

python/pyabacus/CMakeLists.txt

@@ -14,7 +14,7 @@ find_package(pybind11 CONFIG REQUIRED)
 set(ABACUS_SOURCE_DIR "${PROJECT_SOURCE_DIR}/../../source")
 set(BASE_PATH "${ABACUS_SOURCE_DIR}/module_base")
 set(NAO_PATH "${ABACUS_SOURCE_DIR}/module_basis/module_nao")
-set(HSOLVER_PATH "${ABACUS_SOURCE_DIR}/module_hsolver")
+set(HSOLVER_PATH "${ABACUS_SOURCE_DIR}/source_hsolver")
 set(PSI_PATH "${ABACUS_SOURCE_DIR}/module_psi")
 set(ENABLE_LCAO ON)
 list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/../../cmake")

python/pyabacus/CONTRIBUTING.md

@@ -74,7 +74,7 @@ find_package(pybind11 CONFIG REQUIRED)
 set(ABACUS_SOURCE_DIR "${PROJECT_SOURCE_DIR}/../../source")
 set(BASE_PATH "${ABACUS_SOURCE_DIR}/module_base")
 set(NAO_PATH "${ABACUS_SOURCE_DIR}/module_basis/module_nao")
-set(HSOLVER_PATH "${ABACUS_SOURCE_DIR}/module_hsolver")
+set(HSOLVER_PATH "${ABACUS_SOURCE_DIR}/source_hsolver")
 set(PSI_PATH "${ABACUS_SOURCE_DIR}/module_psi")
 set(ENABLE_LCAO ON)
 list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/../../cmake")

python/pyabacus/src/hsolver/py_diago_cg.hpp

@@ -14,7 +14,7 @@
 #include <ATen/core/tensor_map.h>
 #include <ATen/core/tensor_types.h>
 
-#include "module_hsolver/diago_cg.h"
+#include "source_hsolver/diago_cg.h"
 #include "module_base/module_device/memory_op.h"
 
 namespace py = pybind11;

python/pyabacus/src/hsolver/py_diago_dav_subspace.hpp

@@ -10,7 +10,7 @@
 #include <pybind11/numpy.h>
 #include <pybind11/stl.h>
 
-#include "module_hsolver/diago_dav_subspace.h"
+#include "source_hsolver/diago_dav_subspace.h"
 
 namespace py = pybind11;
 

python/pyabacus/src/hsolver/py_diago_david.hpp

@@ -10,7 +10,7 @@
 #include <pybind11/numpy.h>
 #include <pybind11/stl.h>
 
-#include "module_hsolver/diago_david.h"
+#include "source_hsolver/diago_david.h"
 
 namespace py = pybind11;
 

python/pyabacus/src/hsolver/py_hsolver.cpp

@@ -5,7 +5,7 @@
 #include <pybind11/complex.h>
 #include <pybind11/numpy.h>
 
-#include "module_hsolver/diago_dav_subspace.h"
+#include "source_hsolver/diago_dav_subspace.h"
 #include "module_base/kernels/math_kernel_op.h"
 #include "module_base/module_device/types.h"