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1 | 1 | // SPDX-License-Identifier: LGPL-3.0-or-later |
2 | 2 | #pragma once |
3 | 3 |
|
| 4 | +#include <memory> |
| 5 | + |
4 | 6 | #include "common.h" |
5 | 7 | #include "neighbor_list.h" |
6 | 8 |
|
7 | 9 | namespace deepmd { |
| 10 | +/** |
| 11 | + * @brief Deep Tensor. |
| 12 | + **/ |
| 13 | +class DeepTensorBase { |
| 14 | + public: |
| 15 | + /** |
| 16 | + * @brief Deep Tensor constructor without initialization. |
| 17 | + **/ |
| 18 | + DeepTensorBase(){}; |
| 19 | + virtual ~DeepTensorBase(){}; |
| 20 | + /** |
| 21 | + * @brief Deep Tensor constructor with initialization.. |
| 22 | + * @param[in] model The name of the frozen model file. |
| 23 | + * @param[in] gpu_rank The GPU rank. Default is 0. |
| 24 | + * @param[in] name_scope Name scopes of operations. |
| 25 | + **/ |
| 26 | + DeepTensorBase(const std::string& model, |
| 27 | + const int& gpu_rank = 0, |
| 28 | + const std::string& name_scope = ""); |
| 29 | + /** |
| 30 | + * @brief Initialize the Deep Tensor. |
| 31 | + * @param[in] model The name of the frozen model file. |
| 32 | + * @param[in] gpu_rank The GPU rank. Default is 0. |
| 33 | + * @param[in] name_scope Name scopes of operations. |
| 34 | + **/ |
| 35 | + virtual void init(const std::string& model, |
| 36 | + const int& gpu_rank = 0, |
| 37 | + const std::string& name_scope = "") = 0; |
| 38 | + |
| 39 | + /** |
| 40 | + * @brief Evaluate the value by using this model. |
| 41 | + * @param[out] value The value to evalute, usually would be the atomic tensor. |
| 42 | + * @param[in] coord The coordinates of atoms. The array should be of size |
| 43 | + *natoms x 3. |
| 44 | + * @param[in] atype The atom types. The list should contain natoms ints. |
| 45 | + * @param[in] box The cell of the region. The array should be of size 9. |
| 46 | + * @{ |
| 47 | + **/ |
| 48 | + virtual void computew(std::vector<double>& value, |
| 49 | + const std::vector<double>& coord, |
| 50 | + const std::vector<int>& atype, |
| 51 | + const std::vector<double>& box) = 0; |
| 52 | + virtual void computew(std::vector<float>& value, |
| 53 | + const std::vector<float>& coord, |
| 54 | + const std::vector<int>& atype, |
| 55 | + const std::vector<float>& box) = 0; |
| 56 | + /** @} */ |
| 57 | + /** |
| 58 | + * @brief Evaluate the value by using this model. |
| 59 | + * @param[out] value The value to evalute, usually would be the atomic tensor. |
| 60 | + * @param[in] coord The coordinates of atoms. The array should be of size |
| 61 | + *natoms x 3. |
| 62 | + * @param[in] atype The atom types. The list should contain natoms ints. |
| 63 | + * @param[in] box The cell of the region. The array should be of size 9. |
| 64 | + * @param[in] nghost The number of ghost atoms. |
| 65 | + * @param[in] inlist The input neighbour list. |
| 66 | + * @{ |
| 67 | + **/ |
| 68 | + virtual void computew(std::vector<double>& value, |
| 69 | + const std::vector<double>& coord, |
| 70 | + const std::vector<int>& atype, |
| 71 | + const std::vector<double>& box, |
| 72 | + const int nghost, |
| 73 | + const InputNlist& inlist) = 0; |
| 74 | + virtual void computew(std::vector<float>& value, |
| 75 | + const std::vector<float>& coord, |
| 76 | + const std::vector<int>& atype, |
| 77 | + const std::vector<float>& box, |
| 78 | + const int nghost, |
| 79 | + const InputNlist& inlist) = 0; |
| 80 | + /** @} */ |
| 81 | + /** |
| 82 | + * @brief Evaluate the global tensor and component-wise force and virial. |
| 83 | + * @param[out] global_tensor The global tensor to evalute. |
| 84 | + * @param[out] force The component-wise force of the global tensor, size odim |
| 85 | + *x natoms x 3. |
| 86 | + * @param[out] virial The component-wise virial of the global tensor, size |
| 87 | + *odim x 9. |
| 88 | + * @param[out] atom_tensor The atomic tensor value of the model, size natoms x |
| 89 | + *odim. |
| 90 | + * @param[out] atom_virial The component-wise atomic virial of the global |
| 91 | + *tensor, size odim x natoms x 9. |
| 92 | + * @param[in] coord The coordinates of atoms. The array should be of size |
| 93 | + *natoms x 3. |
| 94 | + * @param[in] atype The atom types. The list should contain natoms ints. |
| 95 | + * @param[in] box The cell of the region. The array should be of size 9. |
| 96 | + * @{ |
| 97 | + **/ |
| 98 | + virtual void computew(std::vector<double>& global_tensor, |
| 99 | + std::vector<double>& force, |
| 100 | + std::vector<double>& virial, |
| 101 | + std::vector<double>& atom_tensor, |
| 102 | + std::vector<double>& atom_virial, |
| 103 | + const std::vector<double>& coord, |
| 104 | + const std::vector<int>& atype, |
| 105 | + const std::vector<double>& box) = 0; |
| 106 | + virtual void computew(std::vector<float>& global_tensor, |
| 107 | + std::vector<float>& force, |
| 108 | + std::vector<float>& virial, |
| 109 | + std::vector<float>& atom_tensor, |
| 110 | + std::vector<float>& atom_virial, |
| 111 | + const std::vector<float>& coord, |
| 112 | + const std::vector<int>& atype, |
| 113 | + const std::vector<float>& box) = 0; |
| 114 | + /** @} */ |
| 115 | + /** |
| 116 | + * @brief Evaluate the global tensor and component-wise force and virial. |
| 117 | + * @param[out] global_tensor The global tensor to evalute. |
| 118 | + * @param[out] force The component-wise force of the global tensor, size odim |
| 119 | + *x natoms x 3. |
| 120 | + * @param[out] virial The component-wise virial of the global tensor, size |
| 121 | + *odim x 9. |
| 122 | + * @param[out] atom_tensor The atomic tensor value of the model, size natoms x |
| 123 | + *odim. |
| 124 | + * @param[out] atom_virial The component-wise atomic virial of the global |
| 125 | + *tensor, size odim x natoms x 9. |
| 126 | + * @param[in] coord The coordinates of atoms. The array should be of size |
| 127 | + *natoms x 3. |
| 128 | + * @param[in] atype The atom types. The list should contain natoms ints. |
| 129 | + * @param[in] box The cell of the region. The array should be of size 9. |
| 130 | + * @param[in] nghost The number of ghost atoms. |
| 131 | + * @param[in] inlist The input neighbour list. |
| 132 | + * @{ |
| 133 | + **/ |
| 134 | + virtual void computew(std::vector<double>& global_tensor, |
| 135 | + std::vector<double>& force, |
| 136 | + std::vector<double>& virial, |
| 137 | + std::vector<double>& atom_tensor, |
| 138 | + std::vector<double>& atom_virial, |
| 139 | + const std::vector<double>& coord, |
| 140 | + const std::vector<int>& atype, |
| 141 | + const std::vector<double>& box, |
| 142 | + const int nghost, |
| 143 | + const InputNlist& inlist) = 0; |
| 144 | + virtual void computew(std::vector<float>& global_tensor, |
| 145 | + std::vector<float>& force, |
| 146 | + std::vector<float>& virial, |
| 147 | + std::vector<float>& atom_tensor, |
| 148 | + std::vector<float>& atom_virial, |
| 149 | + const std::vector<float>& coord, |
| 150 | + const std::vector<int>& atype, |
| 151 | + const std::vector<float>& box, |
| 152 | + const int nghost, |
| 153 | + const InputNlist& inlist) = 0; |
| 154 | + /** @} */ |
| 155 | + /** |
| 156 | + * @brief Get the cutoff radius. |
| 157 | + * @return The cutoff radius. |
| 158 | + **/ |
| 159 | + virtual double cutoff() const = 0; |
| 160 | + /** |
| 161 | + * @brief Get the number of types. |
| 162 | + * @return The number of types. |
| 163 | + **/ |
| 164 | + virtual int numb_types() const = 0; |
| 165 | + /** |
| 166 | + * @brief Get the output dimension. |
| 167 | + * @return The output dimension. |
| 168 | + **/ |
| 169 | + virtual int output_dim() const = 0; |
| 170 | + /** |
| 171 | + * @brief Get the list of sel types. |
| 172 | + * @return The list of sel types. |
| 173 | + */ |
| 174 | + virtual const std::vector<int>& sel_types() const = 0; |
| 175 | + /** |
| 176 | + * @brief Get the type map (element name of the atom types) of this model. |
| 177 | + * @param[out] type_map The type map of this model. |
| 178 | + **/ |
| 179 | + virtual void get_type_map(std::string& type_map) = 0; |
| 180 | +}; |
| 181 | + |
8 | 182 | /** |
9 | 183 | * @brief Deep Tensor. |
10 | 184 | **/ |
@@ -169,109 +343,30 @@ class DeepTensor { |
169 | 343 | * @brief Get the cutoff radius. |
170 | 344 | * @return The cutoff radius. |
171 | 345 | **/ |
172 | | - double cutoff() const { |
173 | | - assert(inited); |
174 | | - return rcut; |
175 | | - }; |
| 346 | + double cutoff() const; |
176 | 347 | /** |
177 | 348 | * @brief Get the number of types. |
178 | 349 | * @return The number of types. |
179 | 350 | **/ |
180 | | - int numb_types() const { |
181 | | - assert(inited); |
182 | | - return ntypes; |
183 | | - }; |
| 351 | + int numb_types() const; |
184 | 352 | /** |
185 | 353 | * @brief Get the output dimension. |
186 | 354 | * @return The output dimension. |
187 | 355 | **/ |
188 | | - int output_dim() const { |
189 | | - assert(inited); |
190 | | - return odim; |
191 | | - }; |
| 356 | + int output_dim() const; |
192 | 357 | /** |
193 | 358 | * @brief Get the list of sel types. |
194 | 359 | * @return The list of sel types. |
195 | 360 | */ |
196 | | - const std::vector<int>& sel_types() const { |
197 | | - assert(inited); |
198 | | - return sel_type; |
199 | | - }; |
| 361 | + const std::vector<int>& sel_types() const; |
200 | 362 | /** |
201 | 363 | * @brief Get the type map (element name of the atom types) of this model. |
202 | 364 | * @param[out] type_map The type map of this model. |
203 | 365 | **/ |
204 | 366 | void get_type_map(std::string& type_map); |
205 | 367 |
|
206 | 368 | private: |
207 | | - tensorflow::Session* session; |
208 | | - std::string name_scope; |
209 | | - int num_intra_nthreads, num_inter_nthreads; |
210 | | - tensorflow::GraphDef* graph_def; |
211 | 369 | bool inited; |
212 | | - double rcut; |
213 | | - int dtype; |
214 | | - double cell_size; |
215 | | - int ntypes; |
216 | | - std::string model_type; |
217 | | - std::string model_version; |
218 | | - int odim; |
219 | | - std::vector<int> sel_type; |
220 | | - template <class VT> |
221 | | - VT get_scalar(const std::string& name) const; |
222 | | - template <class VT> |
223 | | - void get_vector(std::vector<VT>& vec, const std::string& name) const; |
224 | | - template <typename MODELTYPE, typename VALUETYPE> |
225 | | - void run_model(std::vector<VALUETYPE>& d_tensor_, |
226 | | - tensorflow::Session* session, |
227 | | - const std::vector<std::pair<std::string, tensorflow::Tensor>>& |
228 | | - input_tensors, |
229 | | - const AtomMap& atommap, |
230 | | - const std::vector<int>& sel_fwd, |
231 | | - const int nghost = 0); |
232 | | - template <typename MODELTYPE, typename VALUETYPE> |
233 | | - void run_model(std::vector<VALUETYPE>& dglobal_tensor_, |
234 | | - std::vector<VALUETYPE>& dforce_, |
235 | | - std::vector<VALUETYPE>& dvirial_, |
236 | | - std::vector<VALUETYPE>& datom_tensor_, |
237 | | - std::vector<VALUETYPE>& datom_virial_, |
238 | | - tensorflow::Session* session, |
239 | | - const std::vector<std::pair<std::string, tensorflow::Tensor>>& |
240 | | - input_tensors, |
241 | | - const AtomMap& atommap, |
242 | | - const std::vector<int>& sel_fwd, |
243 | | - const int nghost = 0); |
244 | | - template <typename VALUETYPE> |
245 | | - void compute_inner(std::vector<VALUETYPE>& value, |
246 | | - const std::vector<VALUETYPE>& coord, |
247 | | - const std::vector<int>& atype, |
248 | | - const std::vector<VALUETYPE>& box); |
249 | | - template <typename VALUETYPE> |
250 | | - void compute_inner(std::vector<VALUETYPE>& value, |
251 | | - const std::vector<VALUETYPE>& coord, |
252 | | - const std::vector<int>& atype, |
253 | | - const std::vector<VALUETYPE>& box, |
254 | | - const int nghost, |
255 | | - const InputNlist& inlist); |
256 | | - template <typename VALUETYPE> |
257 | | - void compute_inner(std::vector<VALUETYPE>& global_tensor, |
258 | | - std::vector<VALUETYPE>& force, |
259 | | - std::vector<VALUETYPE>& virial, |
260 | | - std::vector<VALUETYPE>& atom_tensor, |
261 | | - std::vector<VALUETYPE>& atom_virial, |
262 | | - const std::vector<VALUETYPE>& coord, |
263 | | - const std::vector<int>& atype, |
264 | | - const std::vector<VALUETYPE>& box); |
265 | | - template <typename VALUETYPE> |
266 | | - void compute_inner(std::vector<VALUETYPE>& global_tensor, |
267 | | - std::vector<VALUETYPE>& force, |
268 | | - std::vector<VALUETYPE>& virial, |
269 | | - std::vector<VALUETYPE>& atom_tensor, |
270 | | - std::vector<VALUETYPE>& atom_virial, |
271 | | - const std::vector<VALUETYPE>& coord, |
272 | | - const std::vector<int>& atype, |
273 | | - const std::vector<VALUETYPE>& box, |
274 | | - const int nghost, |
275 | | - const InputNlist& inlist); |
| 370 | + std::shared_ptr<deepmd::DeepTensorBase> dt; |
276 | 371 | }; |
277 | 372 | } // namespace deepmd |
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