add definition for the output of fitting and model (#3128)

Signed-off-by: Han Wang <[email protected]>
Co-authored-by: Han Wang <[email protected]>
Co-authored-by: CodiumAI-Agent <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: 4 people

deepmd_utils/model_format/__init__.py

@@ -15,6 +15,14 @@
     save_dp_model,
     traverse_model_dict,
 )
+from .output_def import (
+    FittingOutputDef,
+    ModelOutputDef,
+    OutputVariableDef,
+    VariableDef,
+    fitting_check_output,
+    model_check_output,
+)
 from .se_e2_a import (
     DescrptSeA,
 )
@@ -31,4 +39,10 @@
     "traverse_model_dict",
     "PRECISION_DICT",
     "DEFAULT_PRECISION",
+    "ModelOutputDef",
+    "FittingOutputDef",
+    "OutputVariableDef",
+    "VariableDef",
+    "model_check_output",
+    "fitting_check_output",
 ]

deepmd_utils/model_format/output_def.py

@@ -0,0 +1,278 @@
+# SPDX-License-Identifier: LGPL-3.0-or-later
+from typing import (
+    Dict,
+    List,
+    Tuple,
+    Union,
+)
+
+
+def check_var(var, var_def):
+    if var_def.atomic:
+        # var.shape == [nf, nloc, *var_def.shape]
+        if len(var.shape) != len(var_def.shape) + 2:
+            raise ValueError(f"{var.shape[2:]} length not matching def {var_def.shape}")
+        if list(var.shape[2:]) != var_def.shape:
+            raise ValueError(f"{var.shape[2:]} not matching def {var_def.shape}")
+    else:
+        # var.shape == [nf, *var_def.shape]
+        if len(var.shape) != len(var_def.shape) + 1:
+            raise ValueError(f"{var.shape[1:]} length not matching def {var_def.shape}")
+        if list(var.shape[1:]) != var_def.shape:
+            raise ValueError(f"{var.shape[1:]} not matching def {var_def.shape}")
+
+
+def model_check_output(cls):
+    """Check if the output of the Model is consistent with the definition.
+
+    Two methods are assumed to be provided by the Model:
+    1. Model.output_def that gives the output definition.
+    2. Model.forward that defines the forward path of the model.
+
+    """
+
+    class wrapper(cls):
+        def __init__(
+            self,
+            *args,
+            **kwargs,
+        ):
+            super().__init__(*args, **kwargs)
+            self.md = cls.output_def(self)
+
+        def forward(
+            self,
+            *args,
+            **kwargs,
+        ):
+            ret = cls.forward(self, *args, **kwargs)
+            for kk in self.md.keys_outp():
+                dd = self.md[kk]
+                check_var(ret[kk], dd)
+                if dd.reduciable:
+                    rk = get_reduce_name(kk)
+                    check_var(ret[rk], self.md[rk])
+                if dd.differentiable:
+                    dnr, dnc = get_deriv_name(kk)
+                    check_var(ret[dnr], self.md[dnr])
+                    check_var(ret[dnc], self.md[dnc])
+            return ret
+
+    return wrapper
+
+
+def fitting_check_output(cls):
+    """Check if the output of the Fitting is consistent with the definition.
+
+    Two methods are assumed to be provided by the Fitting:
+    1. Fitting.output_def that gives the output definition.
+    2. Fitting.forward defines the forward path of the fitting.
+
+    """
+
+    class wrapper(cls):
+        def __init__(
+            self,
+            *args,
+            **kwargs,
+        ):
+            super().__init__(*args, **kwargs)
+            self.md = cls.output_def(self)
+
+        def forward(
+            self,
+            *args,
+            **kwargs,
+        ):
+            ret = cls.forward(self, *args, **kwargs)
+            for kk in self.md.keys():
+                dd = self.md[kk]
+                check_var(ret[kk], dd)
+            return ret
+
+    return wrapper
+
+
+class VariableDef:
+    """Defines the shape and other properties of a variable.
+
+    Parameters
+    ----------
+    name
+          Name of the output variable. Notice that the xxxx_redu,
+          xxxx_derv_c, xxxx_derv_r are reserved names that should
+          not be used to define variables.
+    shape
+          The shape of the variable. e.g. energy should be [1],
+          dipole should be [3], polarizabilty should be [3,3].
+    atomic
+          If the variable is defined for each atom.
+
+    """
+
+    def __init__(
+        self,
+        name: str,
+        shape: Union[List[int], Tuple[int]],
+        atomic: bool = True,
+    ):
+        self.name = name
+        self.shape = list(shape)
+        self.atomic = atomic
+
+
+class OutputVariableDef(VariableDef):
+    """Defines the shape and other properties of the one output variable.
+
+    It is assume that the fitting network output variables for each
+    local atom. This class defines one output variable, including its
+    name, shape, reducibility and differentiability.
+
+    Parameters
+    ----------
+    name
+          Name of the output variable. Notice that the xxxx_redu,
+          xxxx_derv_c, xxxx_derv_r are reserved names that should
+          not be used to define variables.
+    shape
+          The shape of the variable. e.g. energy should be [1],
+          dipole should be [3], polarizabilty should be [3,3].
+    reduciable
+          If the variable is reduced.
+    differentiable
+          If the variable is differentiated with respect to coordinates
+          of atoms and cell tensor (pbc case). Only reduciable variable
+          are differentiable.
+
+    """
+
+    def __init__(
+        self,
+        name: str,
+        shape: Union[List[int], Tuple[int]],
+        reduciable: bool = False,
+        differentiable: bool = False,
+    ):
+        # fitting output must be atomic
+        super().__init__(name, shape, atomic=True)
+        self.reduciable = reduciable
+        self.differentiable = differentiable
+        if not self.reduciable and self.differentiable:
+            raise ValueError("only reduciable variable are differentiable")
+
+
+class FittingOutputDef:
+    """Defines the shapes and other properties of the fitting network outputs.
+
+    It is assume that the fitting network output variables for each
+    local atom. This class defines all the outputs.
+
+    Parameters
+    ----------
+    var_defs
+          List of output variable definitions.
+
+    """
+
+    def __init__(
+        self,
+        var_defs: List[OutputVariableDef] = [],
+    ):
+        self.var_defs = {vv.name: vv for vv in var_defs}
+
+    def __getitem__(
+        self,
+        key,
+    ) -> OutputVariableDef:
+        return self.var_defs[key]
+
+    def get_data(self) -> Dict[str, OutputVariableDef]:
+        return self.var_defs
+
+    def keys(self):
+        return self.var_defs.keys()
+
+
+class ModelOutputDef:
+    """Defines the shapes and other properties of the model outputs.
+
+    The model reduce and differentiate fitting outputs if applicable.
+    If a variable is named by foo, then the reduced variable is called
+    foo_redu, the derivative w.r.t. coordinates is called foo_derv_r
+    and the derivative w.r.t. cell is called foo_derv_c.
+
+    Parameters
+    ----------
+    fit_defs
+          Definition for the fitting net output
+
+    """
+
+    def __init__(
+        self,
+        fit_defs: FittingOutputDef,
+    ):
+        self.def_outp = fit_defs
+        self.def_redu = do_reduce(self.def_outp)
+        self.def_derv_r, self.def_derv_c = do_derivative(self.def_outp)
+        self.var_defs = {}
+        for ii in [
+            self.def_outp.get_data(),
+            self.def_redu,
+            self.def_derv_c,
+            self.def_derv_r,
+        ]:
+            self.var_defs.update(ii)
+
+    def __getitem__(self, key) -> VariableDef:
+        return self.var_defs[key]
+
+    def get_data(self, key) -> Dict[str, VariableDef]:
+        return self.var_defs
+
+    def keys(self):
+        return self.var_defs.keys()
+
+    def keys_outp(self):
+        return self.def_outp.keys()
+
+    def keys_redu(self):
+        return self.def_redu.keys()
+
+    def keys_derv_r(self):
+        return self.def_derv_r.keys()
+
+    def keys_derv_c(self):
+        return self.def_derv_c.keys()
+
+
+def get_reduce_name(name):
+    return name + "_redu"
+
+
+def get_deriv_name(name):
+    return name + "_derv_r", name + "_derv_c"
+
+
+def do_reduce(
+    def_outp,
+):
+    def_redu = {}
+    for kk, vv in def_outp.get_data().items():
+        if vv.reduciable:
+            rk = get_reduce_name(kk)
+            def_redu[rk] = VariableDef(rk, vv.shape, atomic=False)
+    return def_redu
+
+
+def do_derivative(
+    def_outp,
+):
+    def_derv_r = {}
+    def_derv_c = {}
+    for kk, vv in def_outp.get_data().items():
+        if vv.differentiable:
+            rkr, rkc = get_deriv_name(kk)
+            def_derv_r[rkr] = VariableDef(rkr, [*vv.shape, 3], atomic=True)
+            def_derv_c[rkc] = VariableDef(rkc, [*vv.shape, 3, 3], atomic=False)
+    return def_derv_r, def_derv_c