CI: pin numpy to <2.3 & rdkit to <2025.3.3 (#837)

See:
- ParmEd/ParmEd#1406
- kuelumbus/rdkit-pypi#132

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

- **Chores**
- Updated dependency versions in the automated test workflow to improve
compatibility and stability.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Author: njzjz

.github/workflows/pyright.yml

@@ -13,7 +13,7 @@ jobs:
       with:
         python-version: '3.12'
     - run: pip install uv
-    - run: uv pip install --system -e .[amber,ase,pymatgen] rdkit openbabel-wheel
+    - run: uv pip install --system -e .[amber,ase,pymatgen] 'rdkit<2025.3.3' openbabel-wheel
     - uses: jakebailey/pyright-action@v2
       with:
         version: 1.1.363

.github/workflows/test.yml

@@ -26,7 +26,7 @@ jobs:
           **/pyproject.toml
         cache-suffix: "py${{ matrix.python-version }}"
     - name: Install dependencies
-      run: uv pip install --system .[test,amber,ase,pymatgen] coverage ./tests/plugin rdkit openbabel-wheel
+      run: uv pip install --system .[test,amber,ase,pymatgen] coverage ./tests/plugin 'rdkit<2025.3.3' openbabel-wheel 'numpy<2.3'
     - name: Test
       run: cd tests && coverage run --source=../dpdata -m unittest && cd .. && coverage combine tests/.coverage && coverage report
     - name: Run codecov