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test_optimization.py
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130 lines (91 loc) · 4.3 KB
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import importlib.resources as ires
import os
import pytest
from autointent import Pipeline
from autointent.configs import DataConfig, LoggingConfig
from tests.conftest import get_search_space, setup_environment
@pytest.mark.parametrize(
("data_config", "refit_after"),
[
(DataConfig(scheme="ho", separation_ratio=None), False),
(DataConfig(scheme="ho", separation_ratio=0.5), False),
(DataConfig(scheme="cv", separation_ratio=None), False),
(DataConfig(scheme="cv", separation_ratio=0.5), False),
(DataConfig(scheme="ho", separation_ratio=None), True),
(DataConfig(scheme="ho", separation_ratio=0.5), True),
(DataConfig(scheme="cv", separation_ratio=None), True),
(DataConfig(scheme="cv", separation_ratio=0.5), True),
],
)
def test_with_regex(dataset, data_config, refit_after):
project_dir = setup_environment()
search_space = get_search_space("regex")
pipeline_optimizer = Pipeline.from_search_space(search_space)
pipeline_optimizer.set_config(LoggingConfig(project_dir=project_dir, dump_modules=True, clear_ram=True))
pipeline_optimizer.set_config(data_config)
pipeline_optimizer.fit(dataset, refit_after=refit_after)
def test_no_node_separation(dataset_no_oos):
project_dir = setup_environment()
search_space = get_search_space("light")
pipeline_optimizer = Pipeline.from_search_space(search_space)
pipeline_optimizer.set_config(LoggingConfig(project_dir=project_dir, dump_modules=True, clear_ram=True))
pipeline_optimizer.set_config(DataConfig(scheme="ho", separation_ratio=None))
pipeline_optimizer.fit(dataset_no_oos, refit_after=False)
def test_full_config(dataset_no_oos):
config_path = ires.files("tests.assets.configs").joinpath("full_training.yaml")
pipeline_optimizer = Pipeline.from_optimization_config(config_path)
pipeline_optimizer.fit(dataset_no_oos, refit_after=False)
@pytest.mark.parametrize(
"sampler",
["tpe", "random"],
)
def test_bayes(dataset, sampler):
project_dir = setup_environment()
search_space = get_search_space("optuna")
pipeline_optimizer = Pipeline.from_search_space(search_space)
pipeline_optimizer.set_config(LoggingConfig(project_dir=project_dir, dump_modules=True, clear_ram=True))
pipeline_optimizer.set_config(DataConfig(scheme="ho", separation_ratio=0.5))
pipeline_optimizer.fit(dataset, refit_after=False, sampler=sampler)
@pytest.mark.parametrize(
"task_type",
["multiclass", "multilabel", "description"],
)
def test_cv(dataset, task_type):
project_dir = setup_environment()
search_space = get_search_space(task_type)
pipeline_optimizer = Pipeline.from_search_space(search_space)
pipeline_optimizer.set_config(LoggingConfig(project_dir=project_dir, dump_modules=True, clear_ram=True))
pipeline_optimizer.set_config(DataConfig(scheme="cv", separation_ratio=0.5))
if task_type == "multilabel":
dataset = dataset.to_multilabel()
context = pipeline_optimizer.fit(dataset, refit_after=True)
context.dump()
assert os.listdir(pipeline_optimizer.logging_config.dump_dir)
@pytest.mark.parametrize(
"task_type",
["multiclass", "multilabel", "description"],
)
def test_no_context_optimization(dataset, task_type):
project_dir = setup_environment()
search_space = get_search_space(task_type)
pipeline_optimizer = Pipeline.from_search_space(search_space)
pipeline_optimizer.set_config(LoggingConfig(project_dir=project_dir, dump_modules=False, clear_ram=False))
pipeline_optimizer.set_config(DataConfig(scheme="ho", separation_ratio=0.5))
if task_type == "multilabel":
dataset = dataset.to_multilabel()
context = pipeline_optimizer.fit(dataset)
context.dump()
@pytest.mark.parametrize(
"task_type",
["multiclass", "multilabel", "description"],
)
def test_dump_modules(dataset, task_type):
project_dir = setup_environment()
search_space = get_search_space(task_type)
pipeline_optimizer = Pipeline.from_search_space(search_space)
pipeline_optimizer.set_config(LoggingConfig(project_dir=project_dir, dump_modules=True, clear_ram=True))
if task_type == "multilabel":
dataset = dataset.to_multilabel()
context = pipeline_optimizer.fit(dataset)
context.dump()
assert os.listdir(pipeline_optimizer.logging_config.dump_dir)