fix custom log level issue

Author: voorhs

autointent/_logging/config.yaml

@@ -16,14 +16,11 @@ formatters:
       line: lineno
       thread_name: threadName
 handlers:
-  stderr:
+  stdout:
     class: logging.StreamHandler
-    level: INFO
     formatter: json
     stream: ext://sys.stdout
 loggers:
   root:
-    level: DEBUG
     handlers:
-    - stderr
-    - file
+    - stdout

autointent/_logging/setup.py

@@ -1,15 +1,18 @@
 import importlib.resources as ires
-import json
 import logging.config
 import logging.handlers
 
+import yaml
+
 from autointent.custom_types import LogLevel
 
 
-def setup_logging(level: LogLevel) -> None:
-    config_file = ires.files("autointent._logging").joinpath("config.json")
+def setup_logging(level: LogLevel | str) -> None:
+    config_file = ires.files("autointent._logging").joinpath("config.yaml")
     with config_file.open() as f_in:
-        config = json.load(f_in)
+        config = yaml.safe_load(f_in)
+
+    level = LogLevel(level)
+    config["loggers"]["root"]["level"] = level.value
 
     logging.config.dictConfig(config)
-    logging.basicConfig(level=level.value)