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Delly2 is an integrated structural variant prediction method that can discover and genotype deletions, tandem duplications, inversions and translocations
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at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends and split-reads to sensitively and accurately
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delineate genomic rearrangements throughout the genome. Structural variants can be visualized using [Delly-maze](https://github.com/tobiasrausch/delly/tree/master/vis/) and [Delly-suave](https://github.com/tobiasrausch/delly/tree/master/vis/).
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delineate genomic rearrangements throughout the genome. Structural variants can be visualized using [Delly-maze](https://github.com/tobiasrausch/delly/tree/master/vis/maze/) and [Delly-suave](https://github.com/tobiasrausch/delly/tree/master/vis/suave/).
Delly-suave uses indexed coverage tracks in HDF5 file format to support a responsive, interactive browsing of SV sites overlaying read-depth profiles. A detailed documentation is available [here](https://github.com/tobiasrausch/delly/tree/master/vis/suave/README.md).
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Delly-suave uses indexed coverage tracks in HDF5 file format to support a responsive, interactive browsing of SV sites overlaying read-depth profiles. A detailed documentation is available [here](https://github.com/tobiasrausch/delly/tree/master/vis/suave/).
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Maze: Pairwise sequence alignment explorer
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==========================================
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Delly-maze is an interactive SV pairwise sequence alignment explorer, including an in-depth exploration of breakpoint complexities. A detailed documentation is available [here](https://github.com/tobiasrausch/delly/tree/master/vis/maze/README.md).
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Delly-maze is an interactive SV pairwise sequence alignment explorer, including an in-depth exploration of breakpoint complexities. A detailed documentation is available [here](https://github.com/tobiasrausch/delly/tree/master/vis/maze/).
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