Update CI and add Aqua tests (#151)

* Update CI and add Aqua tests

* Fix format

* Fix typo

Author: devmotion

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "monthly"

.github/workflows/CI.yml

@@ -3,12 +3,14 @@ name: CI
 on:
   push:
     branches:
-      # This is where pull requests from "bors r+" are built.
-      - staging
-      # This is where pull requests from "bors try" are built.
-      - trying
-      # Build default branch.
       - main
+  pull_request:
+
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
 
 jobs:
   test:
@@ -33,7 +35,7 @@ jobs:
             os: windows-latest
             arch: x64
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
@@ -45,11 +47,11 @@ jobs:
           coverage: ${{ matrix.version == '1' && matrix.os == 'ubuntu-latest' }}
       - uses: julia-actions/julia-processcoverage@v1
         if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v3
         if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
         with:
           file: lcov.info
-      - uses: coverallsapp/github-action@master
+      - uses: coverallsapp/github-action@v2
         if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
         with:
           github-token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/CompatHelper.yml

@@ -9,7 +9,7 @@ jobs:
   CompatHelper:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - name: "Add the General registry via Git"
         run: |
           import Pkg

.github/workflows/DocPreviewCleanup.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout gh-pages branch
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           ref: gh-pages
 

.github/workflows/Docs.yml

@@ -3,17 +3,11 @@ name: Docs
 on:
   push:
     branches:
-      # This is where pull requests from "bors r+" are built.
-      - staging
-      # This is where pull requests from "bors try" are built.
-      - trying
-      # Build master branch.
       - main
     tags:
       # When a new release is available
       - 'v*'
   pull_request:
-    types: [opened, reopened, synchronize, labeled]
 
 concurrency:
   # Skip intermediate builds: always.
@@ -23,19 +17,25 @@ concurrency:
 
 jobs:
   docs:
+    permissions:
+      contents: write
+      statuses: write
     name: Documentation
-    if: github.event_name != 'pull_request' || contains(github.event.pull_request.labels.*.name, 'preview_docs')
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@v1
         with:
           version: '1'
       - uses: julia-actions/cache@v1
       - uses: julia-actions/julia-buildpkg@v1
-      - uses: julia-actions/julia-docdeploy@v1
+      - run: |
+          julia --project=docs -e '
+            using Pkg
+            Pkg.develop(PackageSpec(path=pwd()))
+            Pkg.instantiate()'
+      - run: julia --project=docs docs/make.jl
         env:
           DATADEPS_ALWAYS_ACCEPT: true # Bypass the accept download prompt
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           JULIA_DEBUG: Documenter # Print `@debug` statements
-          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/Format.yml

@@ -3,19 +3,20 @@ name: Format
 on:
   push:
     branches:
-      # This is where pull requests from "bors r+" are built.
-      - staging
-      # This is where pull requests from "bors try" are built.
-      - trying
-      # Build the master branch.
       - main
   pull_request:
 
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
+
 jobs:
   format:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@latest
         with:
           version: 1

Project.toml

@@ -18,6 +18,7 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 Tulip = "6dd1b50a-3aae-11e9-10b5-ef983d2400fa"
 
 [compat]
+Aqua = "0.6.5"
 DataStructures = "0.17, 0.18"
 Distances = "0.10.1"
 Distributions = "0.23, 0.24, 0.25"
@@ -29,3 +30,11 @@ SimpleUnPack = "1"
 StatsBase = "0.32, 0.33"
 Tulip = "0.7.5, 0.8, 0.9"
 julia = "1.3"
+
+[extras]
+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Aqua", "Random", "Test"]

README.md

@@ -9,7 +9,7 @@ Estimation of calibration errors.
 [![Codecov](https://codecov.io/gh/devmotion/CalibrationErrors.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/devmotion/CalibrationErrors.jl)
 [![Coveralls](https://coveralls.io/repos/github/devmotion/CalibrationErrors.jl/badge.svg?branch=main)](https://coveralls.io/github/devmotion/CalibrationErrors.jl?branch=main)
 [![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle)
-[![Bors enabled](https://bors.tech/images/badge_small.svg)](https://app.bors.tech/repositories/24611)
+[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)
 
 **There are also [Python](https://github.com/devmotion/pycalibration) and [R](https://github.com/devmotion/rcalibration) interfaces for this package**
 

bors.toml

@@ -17,9 +17,6 @@ using Statistics
 
 const OT = ExactOptimalTransport
 
-# estimation
-export calibrationerror
-
 # estimators
 export ECE, SKCE, UCME