Install all dependencies with APT

Obsoletes conda for the Python dependencies.  Matplotlib
(python3-matplotlib in Ubuntu) does not appear to be needed at the
moment.  Capitalize the GitHub Action step names for consistency.

Author: hattne

.dev/docker/make_tests.dockerfile

@@ -5,23 +5,12 @@ RUN mkdir /app
 COPY ./cbflib /app/cbflib
 
 RUN apt-get update && \
-  apt-get install -y build-essential git wget libjpeg-dev m4 automake libpcre2-dev byacc liblzma-dev rsync gfortran libz-dev
-
-RUN mkdir -p ~/miniconda3 && \
-  wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh && \
-  bash ~/miniconda3/miniconda.sh -b -u -p /usr/share/miniconda && \
-  rm ~/miniconda3/miniconda.sh
-
-RUN source /usr/share/miniconda/etc/profile.d/conda.sh && \
-  conda create -y -n build -c conda-forge python=3.11 python-build && \
-  conda create -y -n test -c conda-forge python=3.11 numpy matplotlib
+  apt-get install -y bison build-essential git wget libjpeg-dev m4 automake libpcre2-dev liblzma-dev python3-build python3-dev python3-numpy-dev python3-setuptools python3-venv rsync gfortran libz-dev
 
 RUN cd /app/cbflib && \
-  source /usr/share/miniconda/etc/profile.d/conda.sh && \
-  conda activate build && \
   make all
 
 RUN cd /app/cbflib && \
-  source /usr/share/miniconda/etc/profile.d/conda.sh && \
-  conda activate test && \
-  make tests
+  make tests 2>&1 | tee test.out
+
+RUN ! grep -a ignored /app/cbflib/test.out

.github/workflows/cmake_ctest.yml

@@ -1,4 +1,4 @@
-name: Cmake build and tests
+name: CMake build and tests
 
 on:
   push:
@@ -18,14 +18,14 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
-    - name: install extra dependencies
+    - name: Install extra dependencies
       run: |
         sudo apt-get update
         sudo apt-get install -y python3-numpy-dev
-    - name: build
+    - name: Build
       run: |
         cmake .
         cmake --build . --parallel `nproc`
-    - name: test
+    - name: Test
       run: |
         ctest --parallel `nproc`

.github/workflows/make_tests.yml

@@ -12,32 +12,22 @@ on:
   schedule:
     - cron: '0 20 * * 1'  # Monday 20:00 UTC
 
-
 jobs:
   build_test:
-
     runs-on: ubuntu-latest
 
     steps:
     - uses: actions/checkout@v4
-    - name: create conda environments
-      run: |
-        conda create -y -n build -c conda-forge python=3.11 python-build
-        conda create -y -n test -c conda-forge python=3.11 numpy matplotlib
-    - name: install extra dependencies
+    - name: Install extra dependencies
       run: |
         sudo apt-get update
-        sudo apt-get install -y libjpeg-dev liblzma-dev
-    - name: build
+        sudo apt-get install -y libjpeg-dev liblzma-dev python3-build python3-dev python3-numpy-dev
+    - name: Build
       run: |
-        source /usr/share/miniconda/etc/profile.d/conda.sh
-        conda activate build
         make all
-    - name: test
+    - name: Test
       run: |
-        source /usr/share/miniconda/etc/profile.d/conda.sh
-        conda activate test
         make tests 2>&1 | tee test.out
-    - name : check test output
+    - name : Check test output
       run: |
         ! grep -a ignored test.out