diff --git a/packages/unocss-plugin/lib/index.js b/packages/unocss-plugin/lib/index.js
index 74054bbad2..c26cb6ba11 100644
--- a/packages/unocss-plugin/lib/index.js
+++ b/packages/unocss-plugin/lib/index.js
@@ -94,8 +94,8 @@ function normalizeOptions (options) {
   // web配置
   // todo config读取逻辑通过UnoCSSWebpackPlugin内置逻辑进行，待改进
   webOptions = {
-    include: scan.include || [],
-    exclude: scan.exclude || [],
+    include: scan.include,
+    exclude: scan.exclude,
     transformers: [
       ...transformGroups ? [transformerVariantGroup(transformGroups)] : [],
       ...transformCSS ? [transformerDirectives()] : []
diff --git a/packages/unocss-plugin/lib/web-plugin/utils.js b/packages/unocss-plugin/lib/web-plugin/utils.js
index dfdabcc510..fe57447c93 100644
--- a/packages/unocss-plugin/lib/web-plugin/utils.js
+++ b/packages/unocss-plugin/lib/web-plugin/utils.js
@@ -27,9 +27,10 @@ function createContext (configOrPath, defaults = {}, extraConfigSources = []) {
     const result = await config.loadConfig(root, configOrPath, extraConfigSources, defaults)
     rawConfig = result.config
     uno.setConfig(rawConfig)
+    // plugin配置 > uno.config文件 > defualt
     rollupFilter = pluginutils.createFilter(
-      rawConfig.include || defaultInclude,
-      rawConfig.exclude || defaultExclude
+      configOrPath.include || rawConfig.include || defaultInclude,
+      configOrPath.exclude || rawConfig.exclude || defaultExclude
     )
     const presets = /* @__PURE__ */ new Set()
     uno.config.presets.forEach((i) => {
@@ -81,7 +82,9 @@ function createContext (configOrPath, defaults = {}, extraConfigSources = []) {
     if (code.includes(IGNORE_COMMENT)) {
       return false
     }
-    return code.includes(INCLUDE_COMMENT) || code.includes(CSS_PLACEHOLDER) || rollupFilter(id.replace(/\?v=\w+$/, ''))
+    // rollupFilter不支持query，所以直接过滤掉query匹配
+    const path = id.split('?')[0]
+    return code.includes(INCLUDE_COMMENT) || code.includes(CSS_PLACEHOLDER) || rollupFilter(path)
   }
 
   return {