API: refer to new subpackage apps

Author: pavoljuhas

.coveragerc

@@ -20,4 +20,6 @@ exclude_lines =
 omit =
     ## Exclude from codecov report:
     */tests/debug.py
+    */apps/*.py
+    # TODO remove in version 3.1
     */applications/*.py

conda-recipe/meta.yaml

@@ -43,15 +43,16 @@ test:
   imports:
     - diffpy.structure
     - diffpy.structure.parsers
-    - diffpy.structure.applications
+    - diffpy.structure.apps
     - diffpy.structure.expansion
     - diffpy.structure.tests
     # legacy imports
     - diffpy.Structure
     - diffpy.Structure.Parsers
-    - diffpy.Structure.applications
+    - diffpy.Structure.apps
     - diffpy.Structure.expansion
     - diffpy.Structure.tests
+    - diffpy.structure.applications
 
   # commands:
     # You can put test commands to be run here.  Use this to test that the

doc/manual/source/diffpy.structure.apps.rst

@@ -1,21 +1,21 @@
-diffpy.structure.applications package
-=====================================
+diffpy.structure.apps package
+=============================
 
 Submodules
 ----------
 
-diffpy.structure.applications.anyeye module
--------------------------------------------
+diffpy.structure.apps.anyeye module
+-----------------------------------
 
-.. automodule:: diffpy.structure.applications.anyeye
+.. automodule:: diffpy.structure.apps.anyeye
     :members:
     :undoc-members:
     :show-inheritance:
 
-diffpy.structure.applications.transtru module
----------------------------------------------
+diffpy.structure.apps.transtru module
+-------------------------------------
 
-.. automodule:: diffpy.structure.applications.transtru
+.. automodule:: diffpy.structure.apps.transtru
     :members:
     :undoc-members:
     :show-inheritance:
@@ -24,7 +24,7 @@ diffpy.structure.applications.transtru module
 Module contents
 ---------------
 
-.. automodule:: diffpy.structure.applications
+.. automodule:: diffpy.structure.apps
     :members:
     :undoc-members:
     :show-inheritance:

doc/manual/source/package.rst

@@ -14,7 +14,7 @@ Submodules
     mod_lattice
     mod_spacegroup
     diffpy.structure.parsers
-    diffpy.structure.applications
+    diffpy.structure.apps
     diffpy.structure.expansion