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Thanks for highlighting this bug. I could confirm it on my end, the reason being that an extra end of line was written after each structure in the multi-structure xyz file. I have now pushed the bug fix and it should already be available via pypi. Might take some further time before the conda package is updated (should be automatic). |
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Hi,
The xyz file made by ConformerEnsemble class cannot be open by read_xyz method.
Here is the codes
from morfeus.conformer import ConformerEnsemblefrom morfeus import read_xyzce = ConformerEnsemble.from_rdkit("CCCO", optimize="MMFF94")ce.prune_rmsd()ce.sort()ce.write_xyz("conformers.xyz")read_xyz("conformers.xyz")It is possible to read if using option separate = True.
ce.write_xyz("conformers.xyz", separate=True)read_xyz("conformers_1.xyz")Is it possible to save conformers file which can be opened by read_xyz methods??
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