renv.lock

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      "Author": "Dirk Eddelbuettel, John W. Emerson and Michael J. Kane",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Description": "Boost provides free peer-reviewed portable C++ source  libraries.  A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking.  This  package aims to provide the most useful subset of Boost libraries  for template use among CRAN packages. By placing these libraries in  this package, we offer a more efficient distribution system for CRAN  as replication of this code in the sources of other packages is  avoided. As of release 1.84.0-0, the following Boost libraries are included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast' 'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config' 'container' 'date_time' 'detail' 'dynamic_bitset' 'exception' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'lambda2' 'math' 'move' 'mp11' 'mpl' 'multiprecision' 'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'process' 'propery_tree' 'qvm' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'url' 'utility' 'uuid'.",
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      "Description": "> Efficient operations for single cell ATAC-seq fragments and RNA counts matrices. Interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds.",
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      "Author": "Benjamin Parks [aut, cre, cph] (<https://orcid.org/0000-0002-0261-7472>), Stanford University [cph, fnd], Genentech, Inc. [cph, fnd]",
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      "Source": "Bioconductor",
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      "Description": "Banksy is an R package that incorporates spatial information to  cluster cells in a feature space (e.g. gene expression). To incorporate  spatial information, BANKSY computes the mean neighborhood expression and  azimuthal Gabor filters that capture gene expression gradients. These  features are combined with the cell's own expression to embed cells in a  neighbor-augmented product space which can then be clustered, allowing for accurate and spatially-aware cell typing and tissue domain segmentation.",
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        "dbscan",
        "SpatialExperiment",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "stats",
        "matrixStats",
        "mclust",
        "igraph",
        "irlba",
        "leidenAlg (>= 1.1.0)",
        "utils",
        "uwot",
        "RcppHungarian"
      ],
      "License": "file LICENSE",
      "Encoding": "UTF-8",
      "URL": "https://github.com/prabhakarlab/Banksy",
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        "ExperimentHub",
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      "biocViews": "Clustering, Spatial, SingleCell, GeneExpression, DimensionReduction",
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      "git_branch": "RELEASE_3_19",
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      "git_last_commit_date": "2024-04-30",
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      "NeedsCompilation": "no",
      "Author": "Vipul Singhal [aut], Joseph Lee [aut, cre] (<https://orcid.org/0000-0002-4983-4714>)",
      "Maintainer": "Joseph Lee <joseph.lee@u.nus.edu>"
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      "BugReports": "https://github.com/Bioconductor/Biobase/issues",
      "License": "Artistic-2.0",
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        "RSQLite",
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        "filelock",
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      "BugReports": "https://github.com/Bioconductor/BiocFileCache/issues",
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      "Version": "0.50.0",
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      "biocViews": "Infrastructure",
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        "affy",
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      "Source": "Bioconductor",
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      "Description": "The `BiocIO` package contains high-level abstract classes and generics used by developers to build IO funcionality within the Bioconductor suite of packages. Implements `import()` and `export()` standard generics for importing and exporting biological data formats. `import()` supports whole-file as well as chunk-wise iterative import. The `import()` interface optionally provides a standard mechanism for 'lazy' access via `filter()` (on row or element-like components of the file resource), `select()` (on column-like components of the file resource) and `collect()`. The `import()` interface optionally provides transparent access to remote (e.g. via https) as well as local access. Developers can register a file extension, e.g., `.loom` for dispatch from character-based URIs to specific `import()` / `export()` methods based on classes representing file types, e.g., `LoomFile()`.",
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      "VignetteBuilder": "knitr",
      "biocViews": "Annotation,DataImport",
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      "URL": "https://bioconductor.github.io/BiocManager/",
      "BugReports": "https://github.com/Bioconductor/BiocManager/issues",
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      "Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
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      "Source": "Bioconductor",
      "Date": "2022-12-17",
      "Title": "Nearest Neighbor Detection for Bioconductor Packages",
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      "biocViews": "Clustering, Classification",
      "Description": "Implements exact and approximate methods for nearest neighbor  detection, in a framework that allows them to be easily switched within  Bioconductor packages or workflows. Exact searches can be performed using the k-means for k-nearest neighbors algorithm or with vantage point trees. Approximate searches can be performed using the Annoy or HNSW libraries. Searching on either Euclidean or Manhattan distances is supported.  Parallelization is achieved for all methods by using BiocParallel. Functions  are also provided to search for all neighbors within a given distance.",
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      "Source": "Bioconductor",
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      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"Joe\", \"Cheng\", email = \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Xianying\", \"Tan\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Maximilian\", \"Girlich\", role = \"ctb\"), person(\"Greg\", \"Freedman Ellis\", role = \"ctb\"), person(\"Johannes\", \"Rauh\", role = \"ctb\"), person(\"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables in htmlwidgets/lib\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js in htmlwidgets/lib\"), person(\"Leon\", \"Gersen\", role = c(\"ctb\", \"cph\"), comment = \"noUiSlider in htmlwidgets/lib\"), person(\"Bartek\", \"Szopka\", role = c(\"ctb\", \"cph\"), comment = \"jquery.highlight.js in htmlwidgets/lib\"), person(\"Alex\", \"Pickering\", role = c(\"ctb\")), person(\"William\", \"Holmes\", role = c(\"ctb\")), person(\"Mikko\", \"Marttila\", role = c(\"ctb\")), person(\"Andres\", \"Quintero\", role = c(\"ctb\")), person(\"Stéphane\", \"Laurent\", role = c(\"ctb\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.",
      "URL": "https://github.com/rstudio/DT",
      "BugReports": "https://github.com/rstudio/DT/issues",
      "License": "GPL-3 | file LICENSE",
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        "htmlwidgets (>= 1.3)",
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      "Author": "Yihui Xie [aut], Joe Cheng [aut, cre], Xianying Tan [aut], JJ Allaire [ctb], Maximilian Girlich [ctb], Greg Freedman Ellis [ctb], Johannes Rauh [ctb], SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib), Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib), Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib), Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib), Alex Pickering [ctb], William Holmes [ctb], Mikko Marttila [ctb], Andres Quintero [ctb], Stéphane Laurent [ctb], Posit Software, PBC [cph, fnd]",
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      "Repository": "CRAN"
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      "Source": "Bioconductor",
      "Title": "A unified framework for working transparently with on-disk and in-memory array-like datasets",
      "Description": "Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. Note that this also works on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, ordinary arrays and, data frames.",
      "biocViews": "Infrastructure, DataRepresentation, Annotation, GenomeAnnotation",
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      "License": "Artistic-2.0",
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      "Authors@R": "c( person(\"Hervé\", \"Pagès\", role=c(\"aut\", \"cre\"), email=\"hpages.on.github@gmail.com\"), person(\"Aaron\", \"Lun\", role=\"ctb\", email=\"infinite.monkeys.with.keyboards@gmail.com\"), person(\"Peter\", \"Hickey\", role=\"ctb\", email=\"peter.hickey@gmail.com\"))",
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      "Author": "Hervé Pagès [aut, cre], Aaron Lun [ctb], Peter Hickey [ctb]"
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      "Version": "1.26.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects",
      "Date": "2024-04-23",
      "Authors@R": "c(person(\"Peter\", \"Hickey\", role = c(\"aut\", \"cre\"), email = \"peter.hickey@gmail.com\", comment = c(ORCID = \"0000-0002-8153-6258\")), person(\"Hervé\", \"Pagès\", role = \"ctb\", email = \"hpages.on.github@gmail.com\"), person(\"Aaron\", \"Lun\", role = \"ctb\", email = \"infinite.monkeys.with.keyboards@gmail.com\"))",
      "Description": "A port of the 'matrixStats' API for use with DelayedMatrix objects  from the 'DelayedArray' package. High-performing functions operating on rows  and columns of DelayedMatrix objects, e.g. col / rowMedians(),  col / rowRanks(), and col / rowSds(). Functions optimized per data type and  for subsetted calculations such that both memory usage and processing time is  minimized.",
      "License": "MIT + file LICENSE",
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      "Copyright": "ANN Copyright (c) 1997-2010 University of Maryland and Sunil Arya and David Mount. All Rights Reserved.",
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      "Repository": "CRAN",
      "Author": "Alina Beygelzimer [aut] (cover tree library), Sham Kakadet [aut] (cover tree library), John Langford [aut] (cover tree library), Sunil Arya [aut] (ANN library 1.1.2 for the kd-tree approach), David Mount [aut] (ANN library 1.1.2 for the kd-tree approach), Shengqiao Li [aut, cre]",
      "Maintainer": "Shengqiao Li <lishengqiao@yahoo.com>"
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      ],
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        "stats4",
        "utils",
        "UCSC.utils",
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        "GenomicRanges",
        "Rsamtools",
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        "GenomicFeatures",
        "BSgenome",
        "TxDb.Dmelanogaster.UCSC.dm3.ensGene",
        "BSgenome.Scerevisiae.UCSC.sacCer2",
        "BSgenome.Celegans.UCSC.ce2",
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        "RUnit",
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      "Author": "Sonali Arora [aut], Martin Morgan [aut], Marc Carlson [aut], Hervé Pagès [aut, cre], Prisca Chidimma Maduka [ctb], Atuhurira Kirabo Kakopo [ctb], Haleema Khan [ctb] (vignette translation from Sweave to Rmarkdown / HTML), Emmanuel Chigozie Elendu [ctb]",
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      "Source": "Bioconductor",
      "Title": "Species and taxonomy ID look up tables used by GenomeInfoDb",
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      "Author": "Bioconductor Core Team",
      "Maintainer": "Bioconductor Maintainer <maintainer@bioconductor.org>",
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      "Source": "Bioconductor",
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      "Description": "Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.",
      "biocViews": "Infrastructure, DataImport, Genetics, Sequencing, RNASeq, SNP, Coverage, Alignment, ImmunoOncology",
      "URL": "https://bioconductor.org/packages/GenomicAlignments",
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      "Author": "Hervé Pagès [aut, cre], Valerie Obenchain [aut], Martin Morgan [aut], Fedor Bezrukov [ctb], Robert Castelo [ctb], Halimat C. Atanda [ctb] (Translated 'WorkingWithAlignedNucleotides' vignette from Sweave to RMarkdown / HTML.)",
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      "Source": "Bioconductor",
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      "Description": "The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.",
      "biocViews": "Genetics, Infrastructure, DataRepresentation, Sequencing, Annotation, GenomeAnnotation, Coverage",
      "URL": "https://bioconductor.org/packages/GenomicRanges",
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        "methods",
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        "AnnotationHub",
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        "BSgenome.Scerevisiae.UCSC.sacCer2",
        "BSgenome.Hsapiens.UCSC.hg38",
        "BSgenome.Mmusculus.UCSC.mm10",
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      "git_url": "https://git.bioconductor.org/packages/GenomicRanges",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "8930ae8",
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      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "yes",
      "Author": "Patrick Aboyoun [aut], Hervé Pagès [aut, cre], Michael Lawrence [aut], Sonali Arora [ctb], Martin Morgan [ctb], Kayla Morrell [ctb], Valerie Obenchain [ctb], Marcel Ramos [ctb], Lori Shepherd [ctb], Dan Tenenbaum [ctb], Daniel van Twisk [ctb]",
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      "Package": "GetoptLong",
      "Version": "1.0.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Parsing Command-Line Arguments and Simple Variable Interpolation",
      "Date": "2020-12-15",
      "Author": "Zuguang Gu",
      "Maintainer": "Zuguang Gu <z.gu@dkfz.de>",
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        "methods",
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      "Title": "Generate Functions to Get or Set Global Options",
      "Date": "2020-06-06",
      "Author": "Zuguang Gu",
      "Maintainer": "Zuguang Gu <z.gu@dkfz.de>",
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      "git_last_commit": "d4d8da9",
      "git_last_commit_date": "2024-07-03",
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      "Author": "Hervé Pagès [aut, cre], Patrick Aboyoun [aut], Michael Lawrence [aut]",
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      "Source": "Bioconductor",
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      "URL": "https://bioconductor.org/packages/KEGGREST",
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      "License": "Artistic-2.0",
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      "Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)",
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        "carData"
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      "License": "Unlimited",
      "ByteCompile": "yes",
      "NeedsCompilation": "yes",
      "Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)",
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      "Source": "Repository",
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      "Date": "2024-06-10",
      "Revision": "$Rev: 3657 $",
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        "nnet",
        "survival"
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      "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
      "Title": "Support Functions and Datasets for Venables and Ripley's MASS",
      "LazyData": "yes",
      "ByteCompile": "yes",
      "License": "GPL-2 | GPL-3",
      "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
      "Contact": "<MASS@stats.ox.ac.uk>",
      "NeedsCompilation": "yes",
      "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)",
      "Maintainer": "Brian Ripley <ripley@stats.ox.ac.uk>",
      "Repository": "CRAN"
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      "Source": "Repository",
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      "Date": "2024-03-16",
      "Priority": "recommended",
      "Title": "Sparse and Dense Matrix Classes and Methods",
      "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries.  Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
      "License": "GPL (>= 2) | file LICENCE",
      "URL": "https://Matrix.R-forge.R-project.org",
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      "Contact": "Matrix-authors@R-project.org",
      "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's matrix implementation\"))",
      "Depends": [
        "R (>= 4.4.0)",
        "methods"
      ],
      "Imports": [
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        "graphics",
        "grid",
        "lattice",
        "stats",
        "utils"
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        "datasets",
        "sfsmisc",
        "tools"
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      "Enhances": [
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        "graph"
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      "LazyData": "no",
      "LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
      "BuildResaveData": "no",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>), Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (<https://orcid.org/0000-0003-2753-1437>, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (base R's matrix implementation)",
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      "Source": "Bioconductor",
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      "Description": "S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.",
      "biocViews": "Infrastructure, Software",
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      "BugReports": "https://github.com/Bioconductor/MatrixGenerics/issues",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "Authors@R": "c(person(\"Constantin\", \"Ahlmann-Eltze\", email = \"artjom31415@googlemail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-3762-068X\")), person(\"Peter\", \"Hickey\", role = c(\"aut\", \"cre\"), email = \"peter.hickey@gmail.com\", comment = c(ORCID = \"0000-0002-8153-6258\")), person(\"Hervé\", \"Pagès\", email = \"hpages.on.github@gmail.com\", role = \"aut\"))",
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      "Imports": [
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      "git_url": "https://git.bioconductor.org/packages/MatrixGenerics",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "80e0be9",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "no",
      "Author": "Constantin Ahlmann-Eltze [aut] (<https://orcid.org/0000-0002-3762-068X>), Peter Hickey [aut, cre] (<https://orcid.org/0000-0002-8153-6258>), Hervé Pagès [aut]",
      "Maintainer": "Peter Hickey <peter.hickey@gmail.com>"
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      "Version": "0.5-3",
      "Source": "Repository",
      "Date": "2023-11-06",
      "Title": "Modelling with Sparse and Dense Matrices",
      "Author": "Douglas Bates <bates@stat.wisc.edu> and Martin Maechler <maechler@stat.math.ethz.ch>",
      "Maintainer": "Martin Maechler <mmaechler+Matrix@gmail.com>",
      "Contact": "Matrix-authors@R-project.org",
      "Description": "Modelling with sparse and dense 'Matrix' matrices, using modular prediction and response module classes.",
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      ],
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      "ImportsNote": "_not_yet_stats4",
      "Encoding": "UTF-8",
      "LazyLoad": "yes",
      "License": "GPL (>= 2)",
      "URL": "https://Matrix.R-forge.R-project.org/, https://r-forge.r-project.org/R/?group_id=61",
      "BugReports": "https://R-forge.R-project.org/tracker/?func=add&atid=294&group_id=61",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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        "utils"
      ],
      "Suggests": [
        "codetools"
      ],
      "Title": "S3 Methods Simplified",
      "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))",
      "Author": "Henrik Bengtsson [aut, cre, cph]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Description": "Methods that simplify the setup of S3 generic functions and S3 methods.  Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers.  For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible.  The method setMethodS3() is a good start for those who in the future may want to migrate to S4.  This is a cross-platform package implemented in pure R that generates standard S3 methods.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "URL": "https://github.com/HenrikBengtsson/R.methodsS3",
      "BugReports": "https://github.com/HenrikBengtsson/R.methodsS3/issues",
      "NeedsCompilation": "no",
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      "Source": "Repository",
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      "Imports": [
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        "utils"
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      "Suggests": [
        "tools"
      ],
      "Title": "R Object-Oriented Programming with or without References",
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      "Author": "Henrik Bengtsson [aut, cre, cph]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Description": "Methods and classes for object-oriented programming in R with or without references.  Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers.  The package has been developed since 2001 and is now considered very stable.  This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "URL": "https://github.com/HenrikBengtsson/R.oo",
      "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues",
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        "utils",
        "tools",
        "R.methodsS3"
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      "Title": "Various Programming Utilities",
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      "Author": "Henrik Bengtsson [aut, cre, cph]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Description": "Utility functions useful when programming and developing R packages.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils",
      "BugReports": "https://github.com/HenrikBengtsson/R.utils/issues",
      "NeedsCompilation": "no",
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      "Description": "Creates classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.",
      "Depends": [
        "R (>= 3.0)"
      ],
      "Suggests": [
        "testthat",
        "pryr"
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      "URL": "https://r6.r-lib.org, https://github.com/r-lib/R6/",
      "BugReports": "https://github.com/r-lib/R6/issues",
      "RoxygenNote": "7.1.1",
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      "Author": "Winston Chang [aut, cre]",
      "Maintainer": "Winston Chang <winston@stdout.org>",
      "Repository": "CRAN"
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      "Version": "2.6.2",
      "Source": "Repository",
      "Title": "Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metric",
      "Authors@R": "c( person(\"Gregory\",\"Jefferis\", email=\"jefferis@gmail.com\",  role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0587-9355\")), person(given = c(\"Samuel\", \"E.\"), family = \"Kemp\", role = \"aut\"), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Sunil\",\"Arya\", role=c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-0939-4192\")), person(\"David\",\"Mount\", role=c(\"aut\", \"cph\"),  comment = c(ORCID = \"0000-0002-3290-8932\")), person(\"University of Maryland\", role=\"cph\", comment = \"ANN library is copyright University of Maryland and Sunil Arya and David Mount. See file COPYRIGHT for details\") )",
      "Description": "Finds the k nearest neighbours for every point in a given dataset in O(N log N) time using Arya and Mount's ANN library (v1.1.3). There is support for approximate as well as exact searches, fixed radius searches and 'bd' as well as 'kd' trees. The distance is computed using the L2 (Euclidean) metric. Please see package 'RANN.L1' for the same functionality using the L1 (Manhattan, taxicab) metric.",
      "License": "GPL (>= 3)",
      "URL": "https://github.com/jefferislab/RANN, https://jefferislab.github.io/RANN/",
      "BugReports": "https://github.com/jefferislab/RANN/issues",
      "Suggests": [
        "testthat"
      ],
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      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Gregory Jefferis [aut, cre] (<https://orcid.org/0000-0002-0587-9355>), Samuel E. Kemp [aut], Kirill Müller [ctb] (<https://orcid.org/0000-0002-1416-3412>), Sunil Arya [aut, cph] (<https://orcid.org/0000-0003-0939-4192>), David Mount [aut, cph] (<https://orcid.org/0000-0002-3290-8932>), University of Maryland [cph] (ANN library is copyright University of Maryland and Sunil Arya and David Mount. See file COPYRIGHT for details)",
      "Maintainer": "Gregory Jefferis <jefferis@gmail.com>",
      "Repository": "CRAN"
    },
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      "Version": "1.1-3",
      "Source": "Repository",
      "Date": "2022-04-03",
      "Title": "ColorBrewer Palettes",
      "Authors@R": "c(person(given = \"Erich\", family = \"Neuwirth\", role = c(\"aut\", \"cre\"), email = \"erich.neuwirth@univie.ac.at\"))",
      "Author": "Erich Neuwirth [aut, cre]",
      "Maintainer": "Erich Neuwirth <erich.neuwirth@univie.ac.at>",
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        "R (>= 2.0.0)"
      ],
      "Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.",
      "License": "Apache License 2.0",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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    "RCurl": {
      "Package": "RCurl",
      "Version": "1.98-1.16",
      "Source": "Repository",
      "Title": "General Network (HTTP/FTP/...) Client Interface for R",
      "Authors@R": "c(person(\"CRAN Team\", role = c('ctb', 'cre'), email = \"CRAN@r-project.org\", comment = \"de facto maintainer since 2013\"), person(\"Duncan\", \"Temple Lang\", role = \"aut\", email = \"duncan@r-project.org\", comment = c(ORCID = \"0000-0003-0159-1546\")))",
      "SystemRequirements": "GNU make, libcurl",
      "Description": "A wrapper for 'libcurl' <https://curl.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections.  Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.",
      "License": "BSD_3_clause + file LICENSE",
      "Depends": [
        "R (>= 3.4.0)",
        "methods"
      ],
      "Imports": [
        "bitops"
      ],
      "Suggests": [
        "XML"
      ],
      "Collate": "aclassesEnums.R bitClasses.R xbits.R base64.R binary.S classes.S curl.S curlAuthConstants.R curlEnums.R curlError.R curlInfo.S dynamic.R form.S getFormParams.R getURLContent.R header.R http.R httpError.R httpErrors.R iconv.R info.S mime.R multi.S options.S scp.R support.S upload.R urlExists.R zclone.R zzz.R",
      "NeedsCompilation": "yes",
      "Author": "CRAN Team [ctb, cre] (de facto maintainer since 2013), Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>)",
      "Maintainer": "CRAN Team <CRAN@r-project.org>",
      "Repository": "CRAN"
    },
    "ROCR": {
      "Package": "ROCR",
      "Version": "1.0-11",
      "Source": "Repository",
      "Authors@R": "c(person(\"Tobias\",\"Sing\", email = \"tobias.sing@gmail.com\",role=\"aut\"), person(\"Oliver\",\"Sander\", email = \"osander@gmail.com\",role=\"aut\"), person(\"Niko\",\"Beerenwinkel\", role=\"aut\"), person(\"Thomas\",\"Lengauer\", role=\"aut\"), person(\"Thomas\",\"Unterthiner\", role=\"ctb\"), person(\"Felix G.M.\",\"Ernst\", email = \"felix.gm.ernst@outlook.com\",role=\"cre\", comment = c(ORCID = \"0000-0001-5064-0928\")))",
      "Date": "2020-05-01",
      "Title": "Visualizing the Performance of Scoring Classifiers",
      "Description": "ROC graphs, sensitivity/specificity curves, lift charts, and precision/recall plots are popular examples of trade-off visualizations for specific pairs of performance measures. ROCR is a flexible tool for creating cutoff-parameterized 2D performance curves by freely combining two from over 25 performance measures (new performance measures can be added using a standard interface). Curves from different cross-validation or bootstrapping runs can be averaged by different methods, and standard deviations, standard errors or box plots can be used to visualize the variability across the runs. The parameterization can be visualized by printing cutoff values at the corresponding curve positions, or by coloring the curve according to cutoff. All components of a performance plot can be quickly adjusted using a flexible parameter dispatching mechanism. Despite its flexibility, ROCR is easy to use, with only three commands and reasonable default values for all optional parameters.",
      "Encoding": "UTF-8",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "no",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "methods",
        "graphics",
        "grDevices",
        "gplots",
        "stats"
      ],
      "Suggests": [
        "testthat",
        "knitr",
        "rmarkdown"
      ],
      "URL": "http://ipa-tys.github.io/ROCR/",
      "BugReports": "https://github.com/ipa-tys/ROCR/issues",
      "RoxygenNote": "7.1.0",
      "VignetteBuilder": "knitr",
      "Author": "Tobias Sing [aut], Oliver Sander [aut], Niko Beerenwinkel [aut], Thomas Lengauer [aut], Thomas Unterthiner [ctb], Felix G.M. Ernst [cre] (<https://orcid.org/0000-0001-5064-0928>)",
      "Maintainer": "Felix G.M. Ernst <felix.gm.ernst@outlook.com>",
      "Repository": "CRAN"
    },
    "ROGUE": {
      "Package": "ROGUE",
      "Version": "1.0",
      "Source": "GitHub",
      "Type": "Package",
      "Title": "ROGUE (Ratio of Global Unshifted Entropy)",
      "Author": "Pauling Liu",
      "Maintainer": "Pauling Liu <pauling.liu@pku.edu.cn>",
      "Description": "An entropy-based universal metric for assessing the purity of single cell population",
      "License": "GPL (>=2)",
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      "RemoteType": "github",
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      "RemoteRepo": "ROGUE",
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    "RSQLite": {
      "Package": "RSQLite",
      "Version": "2.3.7",
      "Source": "Repository",
      "Title": "SQLite Interface for R",
      "Date": "2024-05-26",
      "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(c(\"David\", \"A.\"), \"James\", role = \"aut\"), person(\"Seth\", \"Falcon\", role = \"aut\"), person(\"D. Richard\", \"Hipp\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Dan\", \"Kennedy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Joe\", \"Mistachkin\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(, \"SQLite Authors\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"Liam\", \"Healy\", role = \"ctb\", comment = \"for the included SQLite sources\"), person(\"R Consortium\", role = \"fnd\"), person(, \"RStudio\", role = \"cph\") )",
      "Description": "Embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine and for various extensions in a recent version is included. System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations.",
      "License": "LGPL (>= 2.1)",
      "URL": "https://rsqlite.r-dbi.org, https://github.com/r-dbi/RSQLite",
      "BugReports": "https://github.com/r-dbi/RSQLite/issues",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "bit64",
        "blob (>= 1.2.0)",
        "DBI (>= 1.2.0)",
        "memoise",
        "methods",
        "pkgconfig",
        "rlang"
      ],
      "Suggests": [
        "callr",
        "DBItest (>= 1.8.0)",
        "gert",
        "gh",
        "hms",
        "knitr",
        "magrittr",
        "rmarkdown",
        "rvest",
        "testthat (>= 3.0.0)",
        "withr",
        "xml2"
      ],
      "LinkingTo": [
        "plogr (>= 0.2.0)",
        "cpp11 (>= 0.4.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "r-dbi/dbitemplate",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "false",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "Collate": "'SQLiteConnection.R' 'SQLKeywords_SQLiteConnection.R' 'SQLiteDriver.R' 'SQLite.R' 'SQLiteResult.R' 'coerce.R' 'compatRowNames.R' 'copy.R' 'cpp11.R' 'datasetsDb.R' 'dbAppendTable_SQLiteConnection.R' 'dbBeginTransaction.R' 'dbBegin_SQLiteConnection.R' 'dbBind_SQLiteResult.R' 'dbClearResult_SQLiteResult.R' 'dbColumnInfo_SQLiteResult.R' 'dbCommit_SQLiteConnection.R' 'dbConnect_SQLiteConnection.R' 'dbConnect_SQLiteDriver.R' 'dbDataType_SQLiteConnection.R' 'dbDataType_SQLiteDriver.R' 'dbDisconnect_SQLiteConnection.R' 'dbExistsTable_SQLiteConnection_Id.R' 'dbExistsTable_SQLiteConnection_character.R' 'dbFetch_SQLiteResult.R' 'dbGetException_SQLiteConnection.R' 'dbGetInfo_SQLiteConnection.R' 'dbGetInfo_SQLiteDriver.R' 'dbGetPreparedQuery.R' 'dbGetPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbGetRowCount_SQLiteResult.R' 'dbGetRowsAffected_SQLiteResult.R' 'dbGetStatement_SQLiteResult.R' 'dbHasCompleted_SQLiteResult.R' 'dbIsValid_SQLiteConnection.R' 'dbIsValid_SQLiteDriver.R' 'dbIsValid_SQLiteResult.R' 'dbListResults_SQLiteConnection.R' 'dbListTables_SQLiteConnection.R' 'dbQuoteIdentifier_SQLiteConnection_SQL.R' 'dbQuoteIdentifier_SQLiteConnection_character.R' 'dbReadTable_SQLiteConnection_character.R' 'dbRemoveTable_SQLiteConnection_character.R' 'dbRollback_SQLiteConnection.R' 'dbSendPreparedQuery.R' 'dbSendPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbSendQuery_SQLiteConnection_character.R' 'dbUnloadDriver_SQLiteDriver.R' 'dbUnquoteIdentifier_SQLiteConnection_SQL.R' 'dbWriteTable_SQLiteConnection_character_character.R' 'dbWriteTable_SQLiteConnection_character_data.frame.R' 'db_bind.R' 'deprecated.R' 'export.R' 'fetch_SQLiteResult.R' 'import-standalone-check_suggested.R' 'import-standalone-purrr.R' 'initExtension.R' 'initRegExp.R' 'isSQLKeyword_SQLiteConnection_character.R' 'make.db.names_SQLiteConnection_character.R' 'pkgconfig.R' 'show_SQLiteConnection.R' 'sqlData_SQLiteConnection.R' 'table.R' 'transactions.R' 'utils.R' 'version.R' 'zzz.R'",
      "NeedsCompilation": "yes",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], David A. James [aut], Seth Falcon [aut], D. Richard Hipp [ctb] (for the included SQLite sources), Dan Kennedy [ctb] (for the included SQLite sources), Joe Mistachkin [ctb] (for the included SQLite sources), SQLite Authors [ctb] (for the included SQLite sources), Liam Healy [ctb] (for the included SQLite sources), R Consortium [fnd], RStudio [cph]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "RSpectra": {
      "Package": "RSpectra",
      "Version": "0.16-2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Solvers for Large-Scale Eigenvalue and SVD Problems",
      "Date": "2024-07-18",
      "Authors@R": "c( person(\"Yixuan\", \"Qiu\", , \"yixuan.qiu@cos.name\", c(\"aut\", \"cre\")), person(\"Jiali\", \"Mei\", , \"vermouthmjl@gmail.com\", \"aut\", comment = \"Function interface of matrix operation\"), person(\"Gael\", \"Guennebaud\", , \"gael.guennebaud@inria.fr\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\"), person(\"Jitse\", \"Niesen\", , \"jitse@maths.leeds.ac.uk\", \"ctb\", comment = \"Eigenvalue solvers from the 'Eigen' library\") )",
      "Description": "R interface to the 'Spectra' library <https://spectralib.org/> for large-scale eigenvalue and SVD problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the 'eigs()' function that does the similar job as in 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the 'svds()' function to calculate the largest k singular values and corresponding singular vectors of a real matrix. The matrix to be computed on can be dense, sparse, or in the form of an operator defined by the user.",
      "License": "MPL (>= 2)",
      "URL": "https://github.com/yixuan/RSpectra",
      "BugReports": "https://github.com/yixuan/RSpectra/issues",
      "Depends": [
        "R (>= 3.0.2)"
      ],
      "Imports": [
        "Matrix (>= 1.1-0)",
        "Rcpp (>= 0.11.5)"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown",
        "prettydoc"
      ],
      "LinkingTo": [
        "Rcpp",
        "RcppEigen (>= 0.3.3.3.0)"
      ],
      "VignetteBuilder": "knitr, rmarkdown",
      "RoxygenNote": "7.1.2",
      "NeedsCompilation": "yes",
      "Author": "Yixuan Qiu [aut, cre], Jiali Mei [aut] (Function interface of matrix operation), Gael Guennebaud [ctb] (Eigenvalue solvers from the 'Eigen' library), Jitse Niesen [ctb] (Eigenvalue solvers from the 'Eigen' library)",
      "Maintainer": "Yixuan Qiu <yixuan.qiu@cos.name>",
      "Repository": "CRAN"
    },
    "Rcpp": {
      "Package": "Rcpp",
      "Version": "1.0.13-1",
      "Source": "Repository",
      "Title": "Seamless R and C++ Integration",
      "Date": "2024-11-01",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))",
      "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013, <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018, <doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
      "Imports": [
        "methods",
        "utils"
      ],
      "Suggests": [
        "tinytest",
        "inline",
        "rbenchmark",
        "pkgKitten (>= 0.1.2)"
      ],
      "URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp",
      "License": "GPL (>= 2)",
      "BugReports": "https://github.com/RcppCore/Rcpp/issues",
      "MailingList": "rcpp-devel@lists.r-forge.r-project.org",
      "RoxygenNote": "6.1.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), JJ Allaire [aut] (<https://orcid.org/0000-0003-0174-9868>), Kevin Ushey [aut] (<https://orcid.org/0000-0003-2880-7407>), Qiang Kou [aut] (<https://orcid.org/0000-0001-6786-5453>), Nathan Russell [aut], Iñaki Ucar [aut] (<https://orcid.org/0000-0001-6403-5550>), Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), John Chambers [aut]",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "RcppAnnoy": {
      "Package": "RcppAnnoy",
      "Version": "0.0.22",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors",
      "Date": "2024-01-23",
      "Author": "Dirk Eddelbuettel",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Description": "'Annoy' is a small C++ library for Approximate Nearest Neighbors  written for efficient memory usage as well an ability to load from / save to disk. This package provides an R interface by relying on the 'Rcpp' package, exposing the same interface as the original Python wrapper to 'Annoy'. See <https://github.com/spotify/annoy> for more on 'Annoy'. 'Annoy' is released under Version 2.0 of the Apache License. Also included is a small Windows port of 'mmap' which is released under the MIT license.",
      "License": "GPL (>= 2)",
      "Depends": [
        "R (>= 3.1)"
      ],
      "Imports": [
        "methods",
        "Rcpp"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Suggests": [
        "tinytest"
      ],
      "URL": "https://github.com/eddelbuettel/rcppannoy, https://dirk.eddelbuettel.com/code/rcpp.annoy.html",
      "BugReports": "https://github.com/eddelbuettel/rcppannoy/issues",
      "NeedsCompilation": "yes",
      "RoxygenNote": "7.1.1",
      "Repository": "CRAN"
    },
    "RcppArmadillo": {
      "Package": "RcppArmadillo",
      "Version": "14.0.2-1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library",
      "Date": "2024-09-10",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))",
      "Description": "'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries.  The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
      "License": "GPL (>= 2)",
      "LazyLoad": "yes",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Imports": [
        "Rcpp (>= 1.0.8)",
        "stats",
        "utils",
        "methods"
      ],
      "Suggests": [
        "tinytest",
        "Matrix (>= 1.3.0)",
        "pkgKitten",
        "reticulate",
        "slam"
      ],
      "URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html",
      "BugReports": "https://github.com/RcppCore/RcppArmadillo/issues",
      "RoxygenNote": "6.0.1",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Binxiang Ni [aut], Conrad Sanderson [aut] (<https://orcid.org/0000-0002-0049-4501>)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "RcppEigen": {
      "Package": "RcppEigen",
      "Version": "0.3.4.0.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library",
      "Date": "2024-08-23",
      "Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))",
      "Copyright": "See the file COPYRIGHTS for various Eigen copyright details",
      "Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms.  It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
      "License": "GPL (>= 2) | file LICENSE",
      "LazyLoad": "yes",
      "Depends": [
        "R (>= 3.6.0)"
      ],
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        "Rcpp"
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        "stats",
        "utils"
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        "inline",
        "tinytest",
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      "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html",
      "BugReports": "https://github.com/RcppCore/RcppEigen/issues",
      "NeedsCompilation": "yes",
      "Author": "Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Yixuan Qiu [aut] (<https://orcid.org/0000-0003-0109-6692>), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
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      "Package": "RcppGSL",
      "Version": "0.3.13",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration for 'GNU GSL' Vectors and Matrices",
      "Date": "2023-01-12",
      "Author": "Dirk Eddelbuettel and Romain Francois",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Description": "'Rcpp' integration for 'GNU GSL' vectors and matrices The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for scientific computing. It is particularly useful for C and C++ programs as it provides a standard C interface to a wide range of mathematical routines. There are over 1000 functions in total with an extensive test suite. The 'RcppGSL' package provides an easy-to-use interface between 'GSL' data structures and R using concepts from 'Rcpp' which is itself a package that eases the interfaces between R and C++. This package also serves as a prime example of how to build a package that uses 'Rcpp' to connect to another third-party library. The 'autoconf' script, 'inline' plugin and example package can all be used as a stanza to  write a similar package against another library.",
      "License": "GPL (>= 2)",
      "LazyLoad": "yes",
      "LinkingTo": [
        "Rcpp"
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      "Imports": [
        "Rcpp (>= 0.11.0)",
        "stats"
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      "Suggests": [
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      ],
      "SystemRequirements": "GNU GSL",
      "URL": "https://github.com/eddelbuettel/rcppgsl, https://dirk.eddelbuettel.com/code/rcpp.gsl.html",
      "BugReports": "https://github.com/eddelbuettel/rcppgsl/issues",
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      "Title": "'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors",
      "Authors@R": "c( person(\"James\", \"Melville\", , \"jlmelville@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Aaron\", \"Lun\", role = \"ctb\"), person(\"Samuel\", \"Granjeaud\", role = \"ctb\"), person(\"Dmitriy\", \"Selivanov\", role = \"ctb\"), person(\"Yuxing\", \"Liao\", role = \"ctb\") )",
      "Description": "'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R interface by relying on the 'Rcpp' package. See <https://github.com/nmslib/hnswlib> for more on 'hnswlib'. 'hnswlib' is released under Version 2.0 of the Apache License.",
      "License": "GPL (>= 3)",
      "URL": "https://github.com/jlmelville/rcpphnsw",
      "BugReports": "https://github.com/jlmelville/rcpphnsw/issues",
      "Imports": [
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        "Rcpp (>= 0.11.3)"
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      "Author": "James Melville [aut, cre, cph], Aaron Lun [ctb], Samuel Granjeaud [ctb], Dmitriy Selivanov [ctb], Yuxing Liao [ctb]",
      "Maintainer": "James Melville <jlmelville@gmail.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Type": "Package",
      "Title": "Solves Minimum Cost Bipartite Matching Problems",
      "Date": "2023-09-05",
      "Authors@R": "c(person(\"Justin\", \"Silverman\", role=c(\"aut\", \"cre\"), email = \"JustinSilverman@psu.edu\"),  person(\"Cong\", \"Ma\", role=c(\"ctb\", \"cph\")),  person(\"Markus\", \"Buehren\", role=c(\"ctb\", \"cph\")))",
      "Maintainer": "Justin Silverman <JustinSilverman@psu.edu>",
      "Copyright": "See file COPYRIGHT for details",
      "Description": "Header library and R functions to solve minimum cost bipartite matching problem  using Huhn-Munkres algorithm (Hungarian algorithm; <https://en.wikipedia.org/wiki/Hungarian_algorithm>; Kuhn (1955) <doi:10.1002/nav.3800020109>).  This is a repackaging of code written by Cong Ma in the GitHub repo <https://github.com/mcximing/hungarian-algorithm-cpp>.",
      "License": "GPL (>= 2)",
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        "Rcpp (>= 1.0.1)"
      ],
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        "Rcpp"
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      "URL": "https://github.com/jsilve24/RcppHungarian",
      "NeedsCompilation": "yes",
      "Author": "Justin Silverman [aut, cre], Cong Ma [ctb, cph], Markus Buehren [ctb, cph]",
      "Repository": "CRAN"
    },
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      "Version": "0.3.7",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Rcpp Machine Learning Library",
      "Date": "2021-09-21",
      "Authors@R": "person(\"Zachary\", \"DeBruine\",  email = \"zacharydebruine@gmail.com\",  role = c(\"aut\", \"cre\"),  comment = c(ORCID = \"0000-0003-2234-4827\"))",
      "Description": "Fast machine learning algorithms including matrix factorization  and divisive clustering for large sparse and dense matrices.",
      "License": "GPL (>= 2)",
      "Imports": [
        "Rcpp",
        "Matrix",
        "methods",
        "stats"
      ],
      "LinkingTo": [
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      "URL": "https://github.com/zdebruine/RcppML",
      "BugReports": "https://github.com/zdebruine/RcppML/issues",
      "NeedsCompilation": "yes",
      "Author": "Zachary DeBruine [aut, cre] (<https://orcid.org/0000-0003-2234-4827>)",
      "Maintainer": "Zachary DeBruine <zacharydebruine@gmail.com>",
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      "Version": "5.1.10",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Parallel Programming Tools for 'Rcpp'",
      "Authors@R": "c( person(\"JJ\", \"Allaire\", role = c(\"aut\"), email = \"jj@rstudio.com\"), person(\"Romain\", \"Francois\", role = c(\"aut\", \"cph\")), person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\"), person(\"Gregory\", \"Vandenbrouck\", role = \"aut\"), person(\"Marcus\", \"Geelnard\", role = c(\"aut\", \"cph\"), comment = \"TinyThread library, https://tinythreadpp.bitsnbites.eu/\"), person(\"Hamada S.\", \"Badr\", email = \"badr@jhu.edu\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-9808-2344\")), person(family = \"Posit, PBC\", role = \"cph\"), person(family = \"Intel\", role = c(\"aut\", \"cph\"), comment = \"Intel TBB library, https://www.threadingbuildingblocks.org/\"), person(family = \"Microsoft\", role = \"cph\") )",
      "Description": "High level functions for parallel programming with 'Rcpp'. For example, the 'parallelFor()' function can be used to convert the work of a standard serial \"for\" loop into a parallel one and the 'parallelReduce()' function can be used for accumulating aggregate or other values.",
      "Depends": [
        "R (>= 3.0.2)"
      ],
      "Suggests": [
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        "RUnit",
        "knitr",
        "rmarkdown"
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      "SystemRequirements": "GNU make, Intel TBB, Windows: cmd.exe and cscript.exe, Solaris: g++ is required",
      "License": "GPL (>= 3)",
      "URL": "https://rcppcore.github.io/RcppParallel/, https://github.com/RcppCore/RcppParallel",
      "BugReports": "https://github.com/RcppCore/RcppParallel/issues",
      "Biarch": "TRUE",
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      "NeedsCompilation": "yes",
      "Author": "JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, https://tinythreadpp.bitsnbites.eu/), Hamada S. Badr [ctb] (<https://orcid.org/0000-0002-9808-2344>), Posit, PBC [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]",
      "Maintainer": "Kevin Ushey <kevin@rstudio.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Maintainer": "Karl Forner <karl.forner@gmail.com>",
      "License": "GPL (>= 3)",
      "Title": "An Interruptible Progress Bar with OpenMP Support for C++ in R Packages",
      "Type": "Package",
      "LazyLoad": "yes",
      "Author": "Karl Forner <karl.forner@gmail.com>",
      "Description": "Allows to display a progress bar in the R console for long running computations taking place in c++ code, and support for interrupting those computations even in multithreaded code, typically using OpenMP.",
      "URL": "https://github.com/kforner/rcpp_progress",
      "BugReports": "https://github.com/kforner/rcpp_progress/issues",
      "Date": "2020-02-06",
      "Suggests": [
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        "devtools",
        "roxygen2",
        "testthat"
      ],
      "RoxygenNote": "6.1.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "RcppTOML": {
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      "Version": "0.2.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Bindings to Parser for \"Tom's Obvious Markup Language\"",
      "Date": "2023-01-29",
      "Author": "Dirk Eddelbuettel",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Description": "The configuration format defined by 'TOML' (which expands to \"Tom's Obvious Markup Language\") specifies an excellent format (described at <https://toml.io/en/>) suitable for both human editing as well as the common uses of a machine-readable format. This package uses 'Rcpp' to connect to the 'toml++' parser written by Mark Gillard to R.",
      "SystemRequirements": "A C++17 compiler",
      "BugReports": "https://github.com/eddelbuettel/rcpptoml/issues",
      "URL": "http://dirk.eddelbuettel.com/code/rcpp.toml.html",
      "Imports": [
        "Rcpp (>= 0.11.5)"
      ],
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      "LinkingTo": [
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      ],
      "Suggests": [
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      ],
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "RcppZiggurat": {
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      "Version": "0.1.6",
      "Source": "Repository",
      "Type": "Package",
      "Title": "'Rcpp' Integration of Different \"Ziggurat\" Normal RNG Implementations",
      "Date": "2020-10-18",
      "Author": "Dirk Eddelbuettel",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Description": "The Ziggurat generator for normally distributed random numbers, originally proposed by Marsaglia and Tsang (2000,  <doi:10.18637/jss.v005.i08>) has been improved upon a few times starting with Leong et al (2005, <doi:10.18637/jss.v012.i07>). This package provides an aggregation in order to compare different implementations in order to provide an 'faster but good enough' alternative for use with R and C++ code.",
      "License": "GPL (>= 2)",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "Rcpp",
        "parallel",
        "graphics",
        "stats",
        "utils"
      ],
      "Suggests": [
        "rbenchmark",
        "microbenchmark",
        "lattice",
        "knitr",
        "rmarkdown",
        "pinp"
      ],
      "VignetteBuilder": "knitr",
      "LinkingTo": [
        "Rcpp",
        "RcppGSL"
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      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Title": "Update and Manipulate Rd Documentation Objects",
      "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\",  role = c(\"aut\", \"cre\"),  email = \"georgi.boshnakov@manchester.ac.uk\"),  person(given = \"Duncan\",  family = \"Murdoch\",  role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )",
      "Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.",
      "URL": "https://geobosh.github.io/Rdpack/ (doc), https://github.com/GeoBosh/Rdpack (devel)",
      "BugReports": "https://github.com/GeoBosh/Rdpack/issues",
      "Depends": [
        "R (>= 2.15.0)",
        "methods"
      ],
      "Imports": [
        "tools",
        "utils",
        "rbibutils (>= 1.3)"
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      "Suggests": [
        "grDevices",
        "testthat",
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        "gbRd"
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      "LazyLoad": "yes",
      "RoxygenNote": "7.1.1",
      "NeedsCompilation": "no",
      "Author": "Georgi N. Boshnakov [aut, cre], Duncan Murdoch [ctb]",
      "Maintainer": "Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>",
      "Repository": "CRAN"
    },
    "Rfast": {
      "Package": "Rfast",
      "Version": "2.1.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Collection of Efficient and Extremely Fast R Functions",
      "Date": "2025-01-13",
      "Authors@R": "c( person(\"Manos Papadakis\", email = \"rfastofficial@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")),  person(\"Michail Tsagris\", role = c(\"aut\")),  person(\"Marios Dimitriadis\", role = c(\"ctb\")),  person(\"Stefanos Fafalios\", role = c(\"aut\")),  person(\"Matteo Fasiolo\", role = c(\"ctb\")),  person(\"Morgan Jacob\", role = c(\"ctb\")),  person(\"Giorgos Borboudakis\", role = c(\"ctb\")),  person(\"John Burkardt\", role = c(\"ctb\")),  person(\"Changliang Zou\", role = c(\"ctb\")),  person(\"Kleanthi Lakiotaki\", role = c(\"ctb\")),  person(\"Christina Chatzipantsiou\", role = c(\"ctb\")) )",
      "Maintainer": "Manos Papadakis <rfastofficial@gmail.com>",
      "Depends": [
        "R (>= 3.5.0)",
        "Rcpp (>= 0.12.3)",
        "RcppZiggurat",
        "RcppParallel"
      ],
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        "Rcpp (>= 0.12.3)",
        "RcppArmadillo",
        "RcppParallel",
        "RcppZiggurat"
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      ],
      "SystemRequirements": "C++17",
      "BugReports": "https://github.com/RfastOfficial/Rfast/issues",
      "URL": "https://github.com/RfastOfficial/Rfast",
      "Description": "A collection of fast (utility) functions for data analysis. Column and row wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions. References: a) Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>. b) Tsagris M. and Papadakis M. (2018). Forward regression in R: from the extreme slow to the extreme fast. Journal of Data Science, 16(4): 771--780. <doi:10.6339/JDS.201810_16(4).00006>. c) Chatzipantsiou C., Dimitriadis M., Papadakis M. and Tsagris M. (2020). Extremely Efficient Permutation and Bootstrap Hypothesis Tests Using Hypothesis Tests Using R. Journal of Modern Applied Statistical Methods, 18(2), eP2898. <doi:10.48550/arXiv.1806.10947>. d) Tsagris M., Papadakis M., Alenazi A. and Alzeley O. (2024). Computationally Efficient Outlier Detection for High-Dimensional Data Using the MDP Algorithm. Computation, 12(9): 185. <doi:10.3390/computation12090185>.",
      "License": "GPL (>= 2.0)",
      "NeedsCompilation": "yes",
      "Author": "Manos Papadakis [aut, cre, cph], Michail Tsagris [aut], Marios Dimitriadis [ctb], Stefanos Fafalios [aut], Matteo Fasiolo [ctb], Morgan Jacob [ctb], Giorgos Borboudakis [ctb], John Burkardt [ctb], Changliang Zou [ctb], Kleanthi Lakiotaki [ctb], Christina Chatzipantsiou [ctb]",
      "Repository": "CRAN"
    },
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      "Source": "GitHub",
      "Type": "Package",
      "Title": "A Collection of Efficient and Extremely Fast R Functions II",
      "Date": "2023-07-21",
      "Author": "Manos Papadakis, Michail Tsagris, Stefanos Fafalios and Marios Dimitriadis.",
      "Maintainer": "Manos Papadakis <rfastofficial@gmail.com>",
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      ],
      "SystemRequirements": "C++17",
      "Imports": [
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        "RANN"
      ],
      "BugReports": "https://github.com/RfastOfficial/Rfast2/issues",
      "URL": "https://github.com/RfastOfficial/Rfast2",
      "Description": "A collection of fast statistical and utility functions for data analysis. Functions for regression, maximum likelihood, column-wise statistics and many more have been included. C++ has been utilized to speed up the functions.",
      "License": "GPL (>= 2.0)",
      "NeedsCompilation": "yes",
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      "Version": "1.26.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "hdf5 library as an R package",
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      "Description": "Provides C and C++ hdf5 libraries.",
      "License": "Artistic-2.0",
      "Copyright": "src/hdf5/COPYING",
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      "VignetteBuilder": "knitr",
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      ],
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        "knitr",
        "rmarkdown",
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        "mockery"
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      "URL": "https://github.com/grimbough/Rhdf5lib",
      "BugReports": "https://github.com/grimbough/Rhdf5lib",
      "SystemRequirements": "GNU make",
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      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "yes",
      "Author": "Mike Smith [ctb, cre] (<https://orcid.org/0000-0002-7800-3848>), The HDF Group [cph]",
      "Maintainer": "Mike Smith <grimbough@gmail.com>"
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      "Version": "0.23-42",
      "Source": "Repository",
      "Date": "2023-02-11",
      "Title": "Control the Number of Threads on 'BLAS'",
      "Author": "Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama <nakama@ki.rim.or.jp>",
      "Maintainer": "Ei-ji Nakama <nakama@ki.rim.or.jp>",
      "Description": "Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'OpenBLAS', 'ACML', 'BLIS' and 'MKL'). And possible to control the number of threads in 'OpenMP'. Get a number of logical cores and physical cores if feasible.",
      "License": "AGPL-3",
      "URL": "https://prs.ism.ac.jp/~nakama/Rhpc/",
      "ByteCompile": "true",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Version": "3.0.0",
      "Source": "Bioconductor",
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      "Description": "Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.",
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      "Author": "Roger Koenker [cre, aut], Pin Tian Ng [ctb] (Contributions to Sparse QR code), Yousef Saad [ctb] (author of sparskit2), Ben Shaby [ctb] (author of chol2csr), Martin Maechler [ctb] (chol() tweaks; S4, <https://orcid.org/0000-0002-8685-9910>)",
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      "Source": "Bioconductor",
      "Title": "S4 Class for Spatially Resolved -omics Data",
      "Description": "Defines an S4 class for storing data from spatial -omics experiments.  The class extends SingleCellExperiment to  support storage and retrieval of additional information from spot-based and  molecule-based platforms, including spatial coordinates, images, and  image metadata. A specialized constructor function is included for data  from the 10x Genomics Visium platform.",
      "Authors@R": "c( person(\"Dario\", \"Righelli\", role=c(\"aut\", \"cre\"),  email=\"dario.righelli@gmail.com\"),  person(\"Davide\", \"Risso\", role=c(\"aut\"),  email=\"risso.davide@gmail.com\"),  person(\"Helena L.\", \"Crowell\", role=c(\"aut\"),  email=\"helena.crowell@uzh.ch\"),  person(\"Lukas M.\", \"Weber\", role=c(\"aut\"),  email=\"lukas.weber.edu@gmail.com\"), person(\"Nicholas J.\", \"Eagles\", role=c(\"ctb\"), email=\"nickeagles77@gmail.com\"))",
      "URL": "https://github.com/drighelli/SpatialExperiment",
      "BugReports": "https://github.com/drighelli/SpatialExperiment/issues",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "biocViews": "DataRepresentation, DataImport, Infrastructure, ImmunoOncology, GeneExpression, Transcriptomics, SingleCell, Spatial",
      "Depends": [
        "methods",
        "SingleCellExperiment"
      ],
      "Imports": [
        "rjson",
        "grDevices",
        "magick",
        "utils",
        "S4Vectors",
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        "BiocGenerics",
        "BiocFileCache"
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      "Author": "Dario Righelli [aut, cre], Davide Risso [aut], Helena L. Crowell [aut], Lukas M. Weber [aut], Nicholas J. Eagles [ctb]",
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      "Source": "Bioconductor",
      "Title": "SummarizedExperiment container",
      "Description": "The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.",
      "biocViews": "Genetics, Infrastructure, Sequencing, Annotation, Coverage, GenomeAnnotation",
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      "Type": "Package",
      "Title": "Optimal Thresholding Fisher's P-Value Combination Method",
      "Author": "Hong Zhang and Zheyang Wu",
      "Maintainer": "Hong Zhang <hzhang@wpi.edu>",
      "Description": "We provide the cumulative distribution function (CDF), quantile, and statistical power calculator for a collection of  thresholding Fisher's p-value combination methods, including Fisher's  p-value combination method, truncated product method and, in particular, soft-thresholding Fisher's p-value combination method which is proven to be optimal in some context of signal detection. The p-value calculator for the omnibus version of these tests are also included. For reference, please see Hong Zhang and Zheyang Wu. \"TFisher Tests: Optimal and Adaptive Thresholding for Combining p-Values\", submitted.",
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      "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\"))",
      "Description": "Contains data sets used in other packages Torsten Hothorn maintains.",
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        "survival",
        "MASS"
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        "tram",
        "rms",
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        "ATR",
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        "gridExtra",
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      "Author": "Torsten Hothorn [aut, cre]",
      "Maintainer": "Torsten Hothorn <Torsten.Hothorn@R-project.org>",
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      "Title": "Low-level utilities to retrieve data from the UCSC Genome Browser",
      "Description": "A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.",
      "biocViews": "Infrastructure, GenomeAssembly, Annotation, GenomeAnnotation, DataImport",
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      "BugReports": "https://github.com/Bioconductor/UCSC.utils/issues",
      "License": "Artistic-2.0",
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      "Imports": [
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        "stats",
        "httr",
        "jsonlite",
        "S4Vectors"
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      "Suggests": [
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        "RMariaDB",
        "GenomeInfoDb",
        "testthat",
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        "BiocStyle"
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      "git_url": "https://git.bioconductor.org/packages/UCSC.utils",
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      "Date": "2024-09-18",
      "Title": "Vector Generalized Linear and Additive Models",
      "Authors@R": "c(person(\"Thomas\", \"Yee\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9970-3907\"), email = \"t.yee@auckland.ac.nz\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src\"))",
      "Author": "Thomas Yee [aut, cre] (<https://orcid.org/0000-0002-9970-3907>), Cleve Moler [ctb] (LINPACK routines in src)",
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        "MASS",
        "mgcv"
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      "Description": "An implementation of about 6 major classes of statistical regression models. The central algorithm is Fisher scoring and iterative reweighted least squares. At the heart of this package are the vector generalized linear and additive model (VGLM/VGAM) classes. VGLMs can be loosely thought of as multivariate GLMs. VGAMs are data-driven VGLMs that use smoothing. The book \"Vector Generalized Linear and Additive Models: With an Implementation in R\" (Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of the statistical framework and the package. Currently only fixed-effects models are implemented. Many (100+) models and distributions are estimated by maximum likelihood estimation (MLE) or penalized MLE. The other classes are RR-VGLMs (reduced-rank VGLMs), quadratic RR-VGLMs, doubly constrained RR-VGLMs, quadratic RR-VGLMs, reduced-rank VGAMs, RCIMs (row-column interaction models)---these classes perform constrained and unconstrained quadratic ordination (CQO/UQO) models in ecology, as well as constrained additive ordination (CAO). Hauck-Donner effect detection is implemented. Note that these functions are subject to change; see the NEWS and ChangeLog files for latest changes.",
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      "URL": "https://www.stat.auckland.ac.nz/~yee/VGAM/",
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      "Title": "Tools for Parsing and Generating XML Within R and S-Plus",
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        "methods",
        "utils"
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      "Description": "Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP.  Also offers access to an 'XPath' \"interpreter\".",
      "URL": "https://www.omegahat.net/RSXML/",
      "License": "BSD_3_clause + file LICENSE",
      "Collate": "AAA.R DTD.R DTDClasses.R DTDRef.R SAXMethods.R XMLClasses.R applyDOM.R assignChild.R catalog.R createNode.R dynSupports.R error.R flatTree.R nodeAccessors.R parseDTD.R schema.R summary.R tangle.R toString.R tree.R version.R xmlErrorEnums.R xmlEventHandler.R xmlEventParse.R xmlHandler.R xmlInternalSource.R xmlOutputDOM.R xmlNodes.R xmlOutputBuffer.R xmlTree.R xmlTreeParse.R htmlParse.R hashTree.R zzz.R supports.R parser.R libxmlFeatures.R xmlString.R saveXML.R namespaces.R readHTMLTable.R reflection.R xmlToDataFrame.R bitList.R compare.R encoding.R fixNS.R xmlRoot.R serialize.R xmlMemoryMgmt.R keyValueDB.R solrDocs.R XMLRErrorInfo.R xincludes.R namespaceHandlers.R tangle1.R htmlLinks.R htmlLists.R getDependencies.R getRelativeURL.R xmlIncludes.R simplifyPath.R",
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      "Author": "CRAN Team [ctb, cre] (de facto maintainer since 2013), Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>), Tomas Kalibera [ctb]",
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      "Version": "0.44.0",
      "Source": "Bioconductor",
      "Title": "Foundation of external vector representation and manipulation in Bioconductor",
      "Description": "Provides memory efficient S4 classes for storing sequences \"externally\" (e.g. behind an R external pointer, or on disk).",
      "biocViews": "Infrastructure, DataRepresentation",
      "URL": "https://bioconductor.org/packages/XVector",
      "BugReports": "https://github.com/Bioconductor/XVector/issues",
      "License": "Artistic-2.0",
      "Encoding": "UTF-8",
      "Author": "Hervé Pagès and Patrick Aboyoun",
      "Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>",
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        "BiocGenerics (>= 0.37.0)",
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      ],
      "Imports": [
        "methods",
        "utils",
        "tools",
        "zlibbioc",
        "BiocGenerics",
        "S4Vectors",
        "IRanges"
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      "LinkingTo": [
        "S4Vectors",
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      "Suggests": [
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        "drosophila2probe",
        "RUnit"
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      "Collate": "io-utils.R RDS-random-access.R SharedVector-class.R SharedRaw-class.R SharedInteger-class.R SharedDouble-class.R XVector-class.R XRaw-class.R XInteger-class.R XDouble-class.R XVectorList-class.R XRawList-class.R XRawList-comparison.R XIntegerViews-class.R XDoubleViews-class.R OnDiskRaw-class.R RdaCollection-class.R RdsCollection-class.R intra-range-methods.R compact-methods.R reverse-methods.R slice-methods.R view-summarization-methods.R updateObject-methods.R zzz.R",
      "git_url": "https://git.bioconductor.org/packages/XVector",
      "git_branch": "RELEASE_3_19",
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      "Source": "Repository",
      "Date": "2024-09-08",
      "Title": "Combine Multidimensional Arrays",
      "Authors@R": "c(person(\"Tony\", \"Plate\", email = \"tplate@acm.org\", role = c(\"aut\", \"cre\")), person(\"Richard\", \"Heiberger\", role = c(\"aut\")))",
      "Maintainer": "Tony Plate <tplate@acm.org>",
      "Description": "Combine multidimensional arrays into a single array. This is a generalization of 'cbind' and 'rbind'.  Works with vectors, matrices, and higher-dimensional arrays (aka tensors). Also provides functions 'adrop', 'asub', and 'afill' for manipulating, extracting and replacing data in arrays.",
      "Depends": [
        "R (>= 1.5.0)"
      ],
      "Imports": [
        "methods",
        "utils"
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      "License": "MIT + file LICENSE",
      "NeedsCompilation": "no",
      "Author": "Tony Plate [aut, cre], Richard Heiberger [aut]",
      "Repository": "CRAN"
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      "Type": "Package",
      "Title": "Efficient Computations of Standard Clustering Comparison Measures",
      "Authors@R": "c( person(\"Julien\", \"Chiquet\", role = c(\"aut\", \"cre\"), email = \"julien.chiquet@inrae.fr\", comment = c(ORCID = \"0000-0002-3629-3429\")), person(\"Guillem\", \"Rigaill\", role = \"aut\", email = \"guillem.rigaill@inrae.fr\"), person(\"Martina\", \"Sundqvist\", role = \"aut\", email = \"martina.sundqvist@agroparistech.fr\"), person(\"Valentin\", \"Dervieux\", role = \"ctb\", email = \"valentin.dervieux@gmail.com\"), person(\"Florent\", \"Bersani\", role = \"ctb\", email = \"florent@bersani.org\") )",
      "Maintainer": "Julien Chiquet <julien.chiquet@inrae.fr>",
      "Description": "Implements an efficient O(n) algorithm based on bucket-sorting for  fast computation of standard clustering comparison measures. Available measures include adjusted Rand index (ARI), normalized information distance (NID),  normalized mutual information (NMI), adjusted mutual information (AMI),  normalized variation information (NVI) and entropy, as described in Vinh et al (2009)  <doi:10.1145/1553374.1553511>. Include AMI (Adjusted Mutual Information) since version 0.1.2,  a modified version of ARI (MARI), as described in Sundqvist et al. <doi:10.1007/s00180-022-01230-7>  and simple Chi-square distance since version 1.0.0.",
      "License": "GPL (>= 3)",
      "URL": "https://github.com/jchiquet/aricode",
      "BugReports": "https://github.com/jchiquet/aricode/issues",
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      "RoxygenNote": "7.2.3",
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      "Author": "Julien Chiquet [aut, cre] (<https://orcid.org/0000-0002-3629-3429>), Guillem Rigaill [aut], Martina Sundqvist [aut], Valentin Dervieux [ctb], Florent Bersani [ctb]",
      "Repository": "CRAN"
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      "Version": "22.0.0",
      "Source": "Repository",
      "Title": "Integration to 'Apache' 'Arrow'",
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      "Description": "'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. This package provides an interface to the 'Arrow C++' library.",
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      ],
      "License": "Apache License (>= 2.0)",
      "URL": "https://github.com/apache/arrow/, https://arrow.apache.org/docs/r/",
      "BugReports": "https://github.com/apache/arrow/issues",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "SystemRequirements": "C++17; for AWS S3 support on Linux, libcurl and openssl (optional); cmake >= 3.26 (build-time only, and only for full source build)",
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      "Author": "Aron Eklund [aut, cre] (<https://orcid.org/0000-0003-0861-1001>), James Trimble [aut] (<https://orcid.org/0000-0001-7282-8745>)",
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      "Description": "In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data  resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis.  biomaRt provides an interface to a growing collection of databases implementing the BioMart software suite (<http://www.biomart.org>). The package enables retrieval of large amounts of data in a uniform way without the need to know the underlying database schemas or write complex SQL queries.  The most prominent examples of BioMart databases are maintain by Ensembl, which provides biomaRt users direct access to a diverse set of data and enables a wide range of powerful online queries from gene annotation to  database mining.",
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      "Author": "Steffen Durinck [aut], Wolfgang Huber [aut], Sean Davis [ctb], Francois Pepin [ctb], Vince S Buffalo [ctb], Mike Smith [ctb, cre] (<https://orcid.org/0000-0002-7800-3848>)",
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      "Title": "Bitwise Operations",
      "Description": "Functions for bitwise operations on integer vectors.",
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      "BugReports": "https://github.com/mmaechler/R-bitops/issues",
      "NeedsCompilation": "yes",
      "Author": "Steve Dutky [aut] (S original; then (after MM's port) revised and modified), Martin Maechler [cre, aut] (Initial R port; tweaks, <https://orcid.org/0000-0002-8685-9910>)",
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      "Type": "Package",
      "Title": "Authoring Books and Technical Documents with R Markdown",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Albert\", \"Kim\", role = \"ctb\"), person(\"Alessandro\", \"Samuel-Rosa\", role = \"ctb\"), person(\"Andrzej\", \"Oles\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Aust\", \"Frederik\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Bastiaan\", \"Quast\", role = \"ctb\"), person(\"Ben\", \"Marwick\", role = \"ctb\"), person(\"Chester\", \"Ismay\", role = \"ctb\"), person(\"Clifton\", \"Franklund\", role = \"ctb\"), person(\"Daniel\", \"Emaasit\", role = \"ctb\"), person(\"David\", \"Shuman\", role = \"ctb\"), person(\"Dean\", \"Attali\", role = \"ctb\"), person(\"Drew\", \"Tyre\", role = \"ctb\"), person(\"Ellis\", \"Valentiner\", role = \"ctb\"), person(\"Frans\", \"van Dunne\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Jeff\", \"Allen\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Jonathan\", \"McPhers\", role = \"ctb\"), person(\"JooYoung\", \"Seo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Joyce\", \"Robbins\", role = \"ctb\"), person(\"Junwen\", \"Huang\", role = \"ctb\"), person(\"Kevin\", \"Cheung\", role = \"ctb\"), person(\"Kevin\", \"Ushey\", role = \"ctb\"), person(\"Kim\", \"Seonghyun\", role = \"ctb\"), person(\"Kirill\", \"Muller\", role = \"ctb\"), person(\"Luciano\", \"Selzer\", role = \"ctb\"), person(\"Matthew\", \"Lincoln\", role = \"ctb\"), person(\"Maximilian\", \"Held\", role = \"ctb\"), person(\"Michael\", \"Sachs\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Nathan\", \"Werth\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Peter\", \"Hickey\", role = \"ctb\"), person(\"Pedro Rafael D.\", \"Marinho\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1591-8300\")), person(\"Romain\", \"Lesur\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0721-5595\")), person(\"Sahir\", \"Bhatnagar\", role = \"ctb\"), person(\"Shir\", \"Dekel\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1773-2446\")), person(\"Steve\", \"Simpson\", role = \"ctb\"), person(\"Thierry\", \"Onkelinx\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Vincent\", \"Fulco\", role = \"ctb\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\"), person(\"Zhuoer\", \"Dong\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Bartek\", \"Szopka\", role = \"ctb\", comment = \"The jQuery Highlight plugin\"), person(\"Zeno\", \"Rocha\", role = \"cph\", comment = \"clipboard.js library\"), person(family = \"MathQuill contributors\", role = \"ctb\", comment = \"The MathQuill library; authors listed in inst/resources/AUTHORS\"), person(family = \"FriendCode Inc\", role = c(\"cph\", \"ctb\"), comment = \"The gitbook style, with modifications\") )",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Description": "Output formats and utilities for authoring books and technical documents with R Markdown.",
      "License": "GPL-3",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "htmltools (>= 0.3.6)",
        "knitr (>= 1.38)",
        "rmarkdown (>= 2.14)",
        "jquerylib",
        "xfun (>= 0.48)",
        "tinytex (>= 0.12)",
        "yaml (>= 2.1.19)"
      ],
      "Suggests": [
        "bslib (>= 0.2.4)",
        "downlit (>= 0.4.0)",
        "htmlwidgets",
        "jsonlite",
        "rstudioapi",
        "miniUI",
        "rsconnect (>= 0.4.3)",
        "servr (>= 0.13)",
        "shiny",
        "tibble",
        "testit (>= 0.9)",
        "tufte",
        "xml2",
        "webshot",
        "testthat (>= 3.1.0)",
        "withr (>= 2.3.0)"
      ],
      "URL": "https://github.com/rstudio/bookdown, https://pkgs.rstudio.com/bookdown/",
      "BugReports": "https://github.com/rstudio/bookdown/issues",
      "SystemRequirements": "Pandoc (>= 1.17.2)",
      "RoxygenNote": "7.3.2",
      "Encoding": "UTF-8",
      "Config/Needs/book": "remotes, webshot, svglite",
      "Config/Needs/website": "pkgdown, tidyverse/tidytemplate, rstudio/quillt",
      "Config/testthat/edition": "3",
      "VignetteBuilder": "knitr",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), JJ Allaire [ctb], Albert Kim [ctb], Alessandro Samuel-Rosa [ctb], Andrzej Oles [ctb], Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>), Aust Frederik [ctb] (<https://orcid.org/0000-0003-4900-788X>), Bastiaan Quast [ctb], Ben Marwick [ctb], Chester Ismay [ctb], Clifton Franklund [ctb], Daniel Emaasit [ctb], David Shuman [ctb], Dean Attali [ctb], Drew Tyre [ctb], Ellis Valentiner [ctb], Frans van Dunne [ctb], Hadley Wickham [ctb], Jeff Allen [ctb], Jennifer Bryan [ctb], Jonathan McPhers [ctb], JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>), Joyce Robbins [ctb], Junwen Huang [ctb], Kevin Cheung [ctb], Kevin Ushey [ctb], Kim Seonghyun [ctb], Kirill Muller [ctb], Luciano Selzer [ctb], Matthew Lincoln [ctb], Maximilian Held [ctb], Michael Sachs [ctb], Michal Bojanowski [ctb], Nathan Werth [ctb], Noam Ross [ctb], Peter Hickey [ctb], Pedro Rafael D. Marinho [ctb] (<https://orcid.org/0000-0003-1591-8300>), Romain Lesur [ctb] (<https://orcid.org/0000-0002-0721-5595>), Sahir Bhatnagar [ctb], Shir Dekel [ctb] (<https://orcid.org/0000-0003-1773-2446>), Steve Simpson [ctb], Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>), Vincent Fulco [ctb], Yixuan Qiu [ctb], Zhuoer Dong [ctb], Posit Software, PBC [cph, fnd], Bartek Szopka [ctb] (The jQuery Highlight plugin), Zeno Rocha [cph] (clipboard.js library), MathQuill contributors [ctb] (The MathQuill library; authors listed in inst/resources/AUTHORS), FriendCode Inc [cph, ctb] (The gitbook style, with modifications)",
      "Repository": "CRAN"
    },
    "bslib": {
      "Package": "bslib",
      "Version": "0.8.0",
      "Source": "Repository",
      "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'",
      "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )",
      "Description": "Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/bslib/, https://github.com/rstudio/bslib",
      "BugReports": "https://github.com/rstudio/bslib/issues",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Imports": [
        "base64enc",
        "cachem",
        "fastmap (>= 1.1.1)",
        "grDevices",
        "htmltools (>= 0.5.8)",
        "jquerylib (>= 0.1.3)",
        "jsonlite",
        "lifecycle",
        "memoise (>= 2.0.1)",
        "mime",
        "rlang",
        "sass (>= 0.4.9)"
      ],
      "Suggests": [
        "bsicons",
        "curl",
        "fontawesome",
        "future",
        "ggplot2",
        "knitr",
        "magrittr",
        "rappdirs",
        "rmarkdown (>= 2.7)",
        "shiny (> 1.8.1)",
        "testthat",
        "thematic",
        "withr"
      ],
      "Config/Needs/deploy": "BH, chiflights22, colourpicker, commonmark, cpp11, cpsievert/chiflights22, cpsievert/histoslider, dplyr, DT, ggplot2, ggridges, gt, hexbin, histoslider, htmlwidgets, lattice, leaflet, lubridate, modelr, plotly, reactable, reshape2, rprojroot, rsconnect, rstudio/shiny, scales, styler, tibble",
      "Config/Needs/routine": "chromote, desc, renv",
      "Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue, htmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr, rprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-dark-mode.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'",
      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], Garrick Aden-Buie [aut] (<https://orcid.org/0000-0002-7111-0077>), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)",
      "Maintainer": "Carson Sievert <carson@posit.co>",
      "Repository": "CRAN"
    },
    "caTools": {
      "Package": "caTools",
      "Version": "1.18.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc",
      "Date": "2024-09-04",
      "Authors@R": "c(person(given = \"Jarek\", family = \"Tuszynski\", role = \"aut\", email = \"jaroslaw.w.tuszynski@saic.com\"), person(given = \"Michael\", family = \"Dietze\", role = \"cre\", email = \"michael.dietze@uni-goettingen.de\"))",
      "Maintainer": "Michael Dietze <michael.dietze@uni-goettingen.de>",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "bitops"
      ],
      "Suggests": [
        "MASS",
        "rpart"
      ],
      "Description": "Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc.",
      "License": "GPL-3",
      "NeedsCompilation": "yes",
      "Repository": "CRAN",
      "Author": "Jarek Tuszynski [aut], Michael Dietze [cre]"
    },
    "cachem": {
      "Package": "cachem",
      "Version": "1.1.0",
      "Source": "Repository",
      "Title": "Cache R Objects with Automatic Pruning",
      "Description": "Key-value stores with automatic pruning. Caches can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.",
      "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", c(\"aut\", \"cre\")), person(family = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")))",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "ByteCompile": "true",
      "URL": "https://cachem.r-lib.org/, https://github.com/r-lib/cachem",
      "Imports": [
        "rlang",
        "fastmap (>= 1.2.0)"
      ],
      "Suggests": [
        "testthat"
      ],
      "RoxygenNote": "7.2.3",
      "Config/Needs/routine": "lobstr",
      "Config/Needs/website": "pkgdown",
      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "CRAN"
    },
    "circlize": {
      "Package": "circlize",
      "Version": "0.4.16",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Circular Visualization",
      "Date": "2024-02-20",
      "Authors@R": "person(\"Zuguang\", \"Gu\", email = \"z.gu@dkfz.de\", role = c(\"aut\", \"cre\"), comment = c('ORCID'=\"0000-0002-7395-8709\"))",
      "Depends": [
        "R (>= 4.0.0)",
        "graphics"
      ],
      "Imports": [
        "GlobalOptions (>= 0.1.2)",
        "shape",
        "grDevices",
        "utils",
        "stats",
        "colorspace",
        "methods",
        "grid"
      ],
      "Suggests": [
        "knitr",
        "dendextend (>= 1.0.1)",
        "ComplexHeatmap (>= 2.0.0)",
        "gridBase",
        "png",
        "markdown",
        "bezier",
        "covr",
        "rmarkdown"
      ],
      "VignetteBuilder": "knitr",
      "Description": "Circular layout is an efficient way for the visualization of huge  amounts of information. Here this package provides an implementation  of circular layout generation in R as well as an enhancement of available  software. The flexibility of the package is based on the usage of low-level  graphics functions such that self-defined high-level graphics can be easily  implemented by users for specific purposes. Together with the seamless  connection between the powerful computational and visual environment in R,  it gives users more convenience and freedom to design figures for  better understanding complex patterns behind multiple dimensional data.  The package is described in Gu et al. 2014 <doi:10.1093/bioinformatics/btu393>.",
      "URL": "https://github.com/jokergoo/circlize, https://jokergoo.github.io/circlize_book/book/",
      "License": "MIT + file LICENSE",
      "NeedsCompilation": "no",
      "Author": "Zuguang Gu [aut, cre] (<https://orcid.org/0000-0002-7395-8709>)",
      "Maintainer": "Zuguang Gu <z.gu@dkfz.de>",
      "Repository": "CRAN"
    },
    "cli": {
      "Package": "cli",
      "Version": "3.6.3",
      "Source": "Repository",
      "Title": "Helpers for Developing Command Line Interfaces",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.",
      "License": "MIT + file LICENSE",
      "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli",
      "BugReports": "https://github.com/r-lib/cli/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "callr",
        "covr",
        "crayon",
        "digest",
        "glue (>= 1.6.0)",
        "grDevices",
        "htmltools",
        "htmlwidgets",
        "knitr",
        "methods",
        "mockery",
        "processx",
        "ps (>= 1.3.4.9000)",
        "rlang (>= 1.0.2.9003)",
        "rmarkdown",
        "rprojroot",
        "rstudioapi",
        "testthat",
        "tibble",
        "whoami",
        "withr"
      ],
      "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "clipr": {
      "Package": "clipr",
      "Version": "0.8.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Read and Write from the System Clipboard",
      "Authors@R": "c( person(\"Matthew\", \"Lincoln\", , \"matthew.d.lincoln@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4387-3384\")), person(\"Louis\", \"Maddox\", role = \"ctb\"), person(\"Steve\", \"Simpson\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\") )",
      "Description": "Simple utility functions to read from and write to the Windows, OS X, and X11 clipboards.",
      "License": "GPL-3",
      "URL": "https://github.com/mdlincoln/clipr, http://matthewlincoln.net/clipr/",
      "BugReports": "https://github.com/mdlincoln/clipr/issues",
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "rmarkdown",
        "rstudioapi (>= 0.5)",
        "testthat (>= 2.0.0)"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.1.2",
      "SystemRequirements": "xclip (https://github.com/astrand/xclip) or xsel (http://www.vergenet.net/~conrad/software/xsel/) for accessing the X11 clipboard, or wl-clipboard (https://github.com/bugaevc/wl-clipboard) for systems using Wayland.",
      "NeedsCompilation": "no",
      "Author": "Matthew Lincoln [aut, cre] (<https://orcid.org/0000-0002-4387-3384>), Louis Maddox [ctb], Steve Simpson [ctb], Jennifer Bryan [ctb]",
      "Maintainer": "Matthew Lincoln <matthew.d.lincoln@gmail.com>",
      "Repository": "CRAN"
    },
    "clue": {
      "Package": "clue",
      "Version": "0.3-66",
      "Source": "Repository",
      "Encoding": "UTF-8",
      "Title": "Cluster Ensembles",
      "Description": "CLUster Ensembles.",
      "Authors@R": "c(person(\"Kurt\", \"Hornik\", role = c(\"aut\", \"cre\"), email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Walter\", \"Böhm\", role = \"ctb\"))",
      "License": "GPL-2",
      "Depends": [
        "R (>= 3.2.0)"
      ],
      "Imports": [
        "stats",
        "cluster",
        "graphics",
        "methods"
      ],
      "Suggests": [
        "e1071",
        "lpSolve (>= 5.5.7)",
        "quadprog (>= 1.4-8)",
        "relations"
      ],
      "Enhances": [
        "RWeka",
        "ape",
        "cba",
        "cclust",
        "flexclust",
        "flexmix",
        "kernlab",
        "mclust",
        "movMF",
        "modeltools"
      ],
      "NeedsCompilation": "yes",
      "Author": "Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>), Walter Böhm [ctb]",
      "Maintainer": "Kurt Hornik <Kurt.Hornik@R-project.org>",
      "Repository": "CRAN"
    },
    "cluster": {
      "Package": "cluster",
      "Version": "2.1.6",
      "Source": "Repository",
      "Date": "2023-11-30",
      "Priority": "recommended",
      "Title": "\"Finding Groups in Data\": Cluster Analysis Extended Rousseeuw et al.",
      "Description": "Methods for Cluster analysis.  Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".",
      "Maintainer": "Martin Maechler <maechler@stat.math.ethz.ch>",
      "Authors@R": "c(person(\"Martin\",\"Maechler\", role = c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) ,person(\"Peter\", \"Rousseeuw\", role=\"aut\", email=\"peter.rousseeuw@kuleuven.be\", comment = c(\"Fortran original\", ORCID = \"0000-0002-3807-5353\")) ,person(\"Anja\", \"Struyf\", role=\"aut\", comment= \"S original\") ,person(\"Mia\", \"Hubert\", role=\"aut\", email= \"Mia.Hubert@uia.ua.ac.be\", comment = c(\"S original\", ORCID = \"0000-0001-6398-4850\")) ,person(\"Kurt\", \"Hornik\", role=c(\"trl\", \"ctb\"), email=\"Kurt.Hornik@R-project.org\", comment=c(\"port to R; maintenance(1999-2000)\", ORCID=\"0000-0003-4198-9911\")) ,person(\"Matthias\", \"Studer\", role=\"ctb\") ,person(\"Pierre\", \"Roudier\", role=\"ctb\") ,person(\"Juan\",   \"Gonzalez\", role=\"ctb\") ,person(\"Kamil\",  \"Kozlowski\", role=\"ctb\") ,person(\"Erich\",  \"Schubert\", role=\"ctb\", comment = c(\"fastpam options for pam()\", ORCID = \"0000-0001-9143-4880\")) ,person(\"Keefe\",  \"Murphy\", role=\"ctb\", comment = \"volume.ellipsoid({d >= 3})\") #not yet ,person(\"Fischer-Rasmussen\", \"Kasper\", role = \"ctb\", comment = \"Gower distance for CLARA\") )",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "graphics",
        "grDevices",
        "stats",
        "utils"
      ],
      "Suggests": [
        "MASS",
        "Matrix"
      ],
      "SuggestsNote": "MASS: two examples using cov.rob() and mvrnorm(); Matrix tools for testing",
      "Enhances": [
        "mvoutlier",
        "fpc",
        "ellipse",
        "sfsmisc"
      ],
      "EnhancesNote": "xref-ed in man/*.Rd",
      "LazyLoad": "yes",
      "LazyData": "yes",
      "ByteCompile": "yes",
      "BuildResaveData": "no",
      "License": "GPL (>= 2)",
      "URL": "https://svn.r-project.org/R-packages/trunk/cluster/",
      "NeedsCompilation": "yes",
      "Author": "Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Peter Rousseeuw [aut] (Fortran original, <https://orcid.org/0000-0002-3807-5353>), Anja Struyf [aut] (S original), Mia Hubert [aut] (S original, <https://orcid.org/0000-0001-6398-4850>), Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000), <https://orcid.org/0000-0003-4198-9911>), Matthias Studer [ctb], Pierre Roudier [ctb], Juan Gonzalez [ctb], Kamil Kozlowski [ctb], Erich Schubert [ctb] (fastpam options for pam(), <https://orcid.org/0000-0001-9143-4880>), Keefe Murphy [ctb] (volume.ellipsoid({d >= 3}))",
      "Repository": "CRAN"
    },
    "codetools": {
      "Package": "codetools",
      "Version": "0.2-20",
      "Source": "Repository",
      "Priority": "recommended",
      "Author": "Luke Tierney <luke-tierney@uiowa.edu>",
      "Description": "Code analysis tools for R.",
      "Title": "Code Analysis Tools for R",
      "Depends": [
        "R (>= 2.1)"
      ],
      "Maintainer": "Luke Tierney <luke-tierney@uiowa.edu>",
      "URL": "https://gitlab.com/luke-tierney/codetools",
      "License": "GPL",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "colorspace": {
      "Package": "colorspace",
      "Version": "2.1-1",
      "Source": "Repository",
      "Date": "2024-07-26",
      "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes",
      "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))",
      "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/> and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, <doi:10.18637/jss.v096.i01>).",
      "Depends": [
        "R (>= 3.0.0)",
        "methods"
      ],
      "Imports": [
        "graphics",
        "grDevices",
        "stats"
      ],
      "Suggests": [
        "datasets",
        "utils",
        "KernSmooth",
        "MASS",
        "kernlab",
        "mvtnorm",
        "vcd",
        "tcltk",
        "shiny",
        "shinyjs",
        "ggplot2",
        "dplyr",
        "scales",
        "grid",
        "png",
        "jpeg",
        "knitr",
        "rmarkdown",
        "RColorBrewer",
        "rcartocolor",
        "scico",
        "viridis",
        "wesanderson"
      ],
      "VignetteBuilder": "knitr",
      "License": "BSD_3_clause + file LICENSE",
      "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/",
      "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html",
      "LazyData": "yes",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "yes",
      "Author": "Ross Ihaka [aut], Paul Murrell [aut] (<https://orcid.org/0000-0002-3224-8858>), Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Jason C. Fisher [aut] (<https://orcid.org/0000-0001-9032-8912>), Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>), Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Claire D. McWhite [aut] (<https://orcid.org/0000-0001-7346-3047>), Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>)",
      "Maintainer": "Achim Zeileis <Achim.Zeileis@R-project.org>",
      "Repository": "CRAN"
    },
    "commonmark": {
      "Package": "commonmark",
      "Version": "1.9.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "High Performance CommonMark and Github Markdown Rendering in R",
      "Authors@R": "c( person(\"Jeroen\", \"Ooms\", ,\"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"John MacFarlane\", role = \"cph\", comment = \"Author of cmark\"))",
      "Description": "The CommonMark specification <https://github.github.com/gfm/> defines a rationalized version of markdown syntax. This package uses the 'cmark'  reference implementation for converting markdown text into various formats including html, latex and groff man. In addition it exposes the markdown parse tree in xml format. Also includes opt-in support for GFM extensions including tables, autolinks, and strikethrough text.",
      "License": "BSD_2_clause + file LICENSE",
      "URL": "https://docs.ropensci.org/commonmark/ https://ropensci.r-universe.dev/commonmark",
      "BugReports": "https://github.com/r-lib/commonmark/issues",
      "Suggests": [
        "curl",
        "testthat",
        "xml2"
      ],
      "RoxygenNote": "7.2.3",
      "Language": "en-US",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), John MacFarlane [cph] (Author of cmark)",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "CRAN"
    },
    "cowplot": {
      "Package": "cowplot",
      "Version": "1.1.3",
      "Source": "Repository",
      "Title": "Streamlined Plot Theme and Plot Annotations for 'ggplot2'",
      "Authors@R": "person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\", \"cre\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") )",
      "Description": "Provides various features that help with creating publication-quality figures with 'ggplot2', such as a set of themes, functions to align plots and arrange them into complex compound figures, and functions that make it easy to annotate plots and or mix plots with images. The package was originally written for internal use in the Wilke lab, hence the name (Claus O. Wilke's plot package). It has also been used extensively in the book Fundamentals of Data Visualization.",
      "URL": "https://wilkelab.org/cowplot/",
      "BugReports": "https://github.com/wilkelab/cowplot/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "ggplot2 (>= 3.4.0)",
        "grid",
        "gtable",
        "grDevices",
        "methods",
        "rlang",
        "scales"
      ],
      "License": "GPL-2",
      "Suggests": [
        "Cairo",
        "covr",
        "dplyr",
        "forcats",
        "gridGraphics (>= 0.4-0)",
        "knitr",
        "lattice",
        "magick",
        "maps",
        "PASWR",
        "patchwork",
        "rmarkdown",
        "ragg",
        "testthat (>= 1.0.0)",
        "tidyr",
        "vdiffr (>= 0.3.0)",
        "VennDiagram"
      ],
      "VignetteBuilder": "knitr",
      "Collate": "'add_sub.R' 'align_plots.R' 'as_grob.R' 'as_gtable.R' 'axis_canvas.R' 'cowplot.R' 'draw.R' 'get_plot_component.R' 'get_axes.R' 'get_titles.R' 'get_legend.R' 'get_panel.R' 'gtable.R' 'key_glyph.R' 'plot_grid.R' 'save.R' 'set_null_device.R' 'setup.R' 'stamp.R' 'themes.R' 'utils_ggplot2.R'",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Claus O. Wilke [aut, cre] (<https://orcid.org/0000-0002-7470-9261>)",
      "Maintainer": "Claus O. Wilke <wilke@austin.utexas.edu>",
      "Repository": "CRAN"
    },
    "cpp11": {
      "Package": "cpp11",
      "Version": "0.5.0",
      "Source": "Repository",
      "Title": "A C++11 Interface for R's C Interface",
      "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides a header only, C++11 interface to R's C interface.  Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.",
      "License": "MIT + file LICENSE",
      "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11",
      "BugReports": "https://github.com/r-lib/cpp11/issues",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Suggests": [
        "bench",
        "brio",
        "callr",
        "cli",
        "covr",
        "decor",
        "desc",
        "ggplot2",
        "glue",
        "knitr",
        "lobstr",
        "mockery",
        "progress",
        "rmarkdown",
        "scales",
        "Rcpp",
        "testthat (>= 3.2.0)",
        "tibble",
        "utils",
        "vctrs",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Davis Vaughan [aut, cre] (<https://orcid.org/0000-0003-4777-038X>), Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Davis Vaughan <davis@posit.co>",
      "Repository": "CRAN"
    },
    "crayon": {
      "Package": "crayon",
      "Version": "1.5.3",
      "Source": "Repository",
      "Title": "Colored Terminal Output",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects.  Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily.  This package was inspired by the 'chalk' 'JavaScript' project.",
      "License": "MIT + file LICENSE",
      "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon",
      "BugReports": "https://github.com/r-lib/crayon/issues",
      "Imports": [
        "grDevices",
        "methods",
        "utils"
      ],
      "Suggests": [
        "mockery",
        "rstudioapi",
        "testthat",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "crosstalk": {
      "Package": "crosstalk",
      "Version": "1.2.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Inter-Widget Interactivity for HTML Widgets",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(family = \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )",
      "Description": "Provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e. static .html files). Currently supports linked brushing and filtering.",
      "License": "MIT + file LICENSE",
      "Imports": [
        "htmltools (>= 0.3.6)",
        "jsonlite",
        "lazyeval",
        "R6"
      ],
      "Suggests": [
        "shiny",
        "ggplot2",
        "testthat (>= 2.1.0)",
        "sass",
        "bslib"
      ],
      "URL": "https://rstudio.github.io/crosstalk/, https://github.com/rstudio/crosstalk",
      "BugReports": "https://github.com/rstudio/crosstalk/issues",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library)",
      "Maintainer": "Carson Sievert <carson@posit.co>",
      "Repository": "CRAN"
    },
    "cubature": {
      "Package": "cubature",
      "Version": "2.1.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Adaptive Multivariate Integration over Hypercubes",
      "VignetteBuilder": "knitr",
      "SystemRequirements": "GNU make and USE_C17",
      "URL": "https://bnaras.github.io/cubature/",
      "BugReports": "https://github.com/bnaras/cubature/issues",
      "Authors@R": "c(person(\"Balasubramanian\", \"Narasimhan\", role=c(\"aut\", \"cre\"), email = \"naras@stat.stanford.edu\"), person(\"Manuel\", \"Koller\", role=c(\"ctb\"), email = \"koller.manuel@gmail.com\"), person(c(\"Steven\", \"G.\"), \"Johnson\", role=c(\"aut\")), person(\"Thomas\", \"Hahn\", role=c(\"aut\")), person(\"Annie\", \"Bouvier\", role=c(\"aut\")), person(\"Kiên\", \"Kiêu\", role=c(\"aut\"), email = \"Kien.Kieu@jouy.inra.fr\"), person(\"Simen\", \"Gaure\", role=c(\"ctb\"), email = \"simen.gaure@frisch.uio.no\"))",
      "Description": "R wrappers around the cubature C library of Steven G. Johnson for adaptive multivariate integration over hypercubes and the Cuba C library of Thomas Hahn for deterministic and Monte Carlo integration. Scalar and vector interfaces for  cubature and Cuba routines are provided; the vector interfaces are highly recommended as demonstrated in the package vignette.",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "LinkingTo": [
        "Rcpp"
      ],
      "Imports": [
        "Rcpp"
      ],
      "NeedsCompilation": "yes",
      "RoxygenNote": "7.3.2",
      "Suggests": [
        "testthat",
        "knitr",
        "mvtnorm",
        "benchr",
        "rmarkdown"
      ],
      "Author": "Balasubramanian Narasimhan [aut, cre], Manuel Koller [ctb], Steven G. Johnson [aut], Thomas Hahn [aut], Annie Bouvier [aut], Kiên Kiêu [aut], Simen Gaure [ctb]",
      "Maintainer": "Balasubramanian Narasimhan <naras@stat.stanford.edu>",
      "Repository": "CRAN"
    },
    "curl": {
      "Package": "curl",
      "Version": "6.0.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Modern and Flexible Web Client for R",
      "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))",
      "Description": "Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the  'httr2' package which builds on this package with http specific tools and logic.",
      "License": "MIT + file LICENSE",
      "SystemRequirements": "libcurl (>= 7.62): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)",
      "URL": "https://jeroen.r-universe.dev/curl",
      "BugReports": "https://github.com/jeroen/curl/issues",
      "Suggests": [
        "spelling",
        "testthat (>= 1.0.0)",
        "knitr",
        "jsonlite",
        "later",
        "rmarkdown",
        "httpuv (>= 1.4.4)",
        "webutils"
      ],
      "VignetteBuilder": "knitr",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "RoxygenNote": "7.3.2.9000",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Hadley Wickham [ctb], Posit Software, PBC [cph]",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "CRAN"
    },
    "data.table": {
      "Package": "data.table",
      "Version": "1.16.2",
      "Source": "Repository",
      "Title": "Extension of `data.frame`",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "methods"
      ],
      "Suggests": [
        "bit64 (>= 4.0.0)",
        "bit (>= 4.0.4)",
        "R.utils",
        "xts",
        "zoo (>= 1.8-1)",
        "yaml",
        "knitr",
        "markdown"
      ],
      "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.",
      "License": "MPL-2.0 | file LICENSE",
      "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table",
      "BugReports": "https://github.com/Rdatatable/data.table/issues",
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "ByteCompile": "TRUE",
      "Authors@R": "c( person(\"Tyson\",\"Barrett\",        role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\",           role=\"aut\",          email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\",      role=\"aut\",          email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\",          role=\"aut\"), person(\"Michael\",\"Chirico\",      role=\"aut\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\",         role=\"aut\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Pasha\",\"Stetsenko\",      role=\"ctb\"), person(\"Tom\",\"Short\",            role=\"ctb\"), person(\"Steve\",\"Lianoglou\",      role=\"ctb\"), person(\"Eduard\",\"Antonyan\",      role=\"ctb\"), person(\"Markus\",\"Bonsch\",        role=\"ctb\"), person(\"Hugh\",\"Parsonage\",       role=\"ctb\"), person(\"Scott\",\"Ritchie\",        role=\"ctb\"), person(\"Kun\",\"Ren\",              role=\"ctb\"), person(\"Xianying\",\"Tan\",         role=\"ctb\"), person(\"Rick\",\"Saporta\",         role=\"ctb\"), person(\"Otto\",\"Seiskari\",        role=\"ctb\"), person(\"Xianghui\",\"Dong\",        role=\"ctb\"), person(\"Michel\",\"Lang\",          role=\"ctb\"), person(\"Watal\",\"Iwasaki\",        role=\"ctb\"), person(\"Seth\",\"Wenchel\",         role=\"ctb\"), person(\"Karl\",\"Broman\",          role=\"ctb\"), person(\"Tobias\",\"Schmidt\",       role=\"ctb\"), person(\"David\",\"Arenburg\",       role=\"ctb\"), person(\"Ethan\",\"Smith\",          role=\"ctb\"), person(\"Francois\",\"Cocquemas\",   role=\"ctb\"), person(\"Matthieu\",\"Gomez\",       role=\"ctb\"), person(\"Philippe\",\"Chataignon\",  role=\"ctb\"), person(\"Nello\",\"Blaser\",         role=\"ctb\"), person(\"Dmitry\",\"Selivanov\",     role=\"ctb\"), person(\"Andrey\",\"Riabushenko\",   role=\"ctb\"), person(\"Cheng\",\"Lee\",            role=\"ctb\"), person(\"Declan\",\"Groves\",        role=\"ctb\"), person(\"Daniel\",\"Possenriede\",   role=\"ctb\"), person(\"Felipe\",\"Parages\",       role=\"ctb\"), person(\"Denes\",\"Toth\",           role=\"ctb\"), person(\"Mus\",\"Yaramaz-David\",    role=\"ctb\"), person(\"Ayappan\",\"Perumal\",      role=\"ctb\"), person(\"James\",\"Sams\",           role=\"ctb\"), person(\"Martin\",\"Morgan\",        role=\"ctb\"), person(\"Michael\",\"Quinn\",        role=\"ctb\"), person(\"@javrucebo\",\"\",          role=\"ctb\"), person(\"@marc-outins\",\"\",        role=\"ctb\"), person(\"Roy\",\"Storey\",           role=\"ctb\"), person(\"Manish\",\"Saraswat\",      role=\"ctb\"), person(\"Morgan\",\"Jacob\",         role=\"ctb\"), person(\"Michael\",\"Schubmehl\",    role=\"ctb\"), person(\"Davis\",\"Vaughan\",        role=\"ctb\"), person(\"Leonardo\",\"Silvestri\",   role=\"ctb\"), person(\"Jim\",\"Hester\",           role=\"ctb\"), person(\"Anthony\",\"Damico\",       role=\"ctb\"), person(\"Sebastian\",\"Freundt\",    role=\"ctb\"), person(\"David\",\"Simons\",         role=\"ctb\"), person(\"Elliott\",\"Sales de Andrade\", role=\"ctb\"), person(\"Cole\",\"Miller\",          role=\"ctb\"), person(\"Jens Peder\",\"Meldgaard\", role=\"ctb\"), person(\"Vaclav\",\"Tlapak\",        role=\"ctb\"), person(\"Kevin\",\"Ushey\",          role=\"ctb\"), person(\"Dirk\",\"Eddelbuettel\",    role=\"ctb\"), person(\"Tony\",\"Fischetti\",       role=\"ctb\"), person(\"Ofek\",\"Shilon\",          role=\"ctb\"), person(\"Vadim\",\"Khotilovich\",    role=\"ctb\"), person(\"Hadley\",\"Wickham\",       role=\"ctb\"), person(\"Bennet\",\"Becker\",        role=\"ctb\"), person(\"Kyle\",\"Haynes\",          role=\"ctb\"), person(\"Boniface Christian\",\"Kamgang\", role=\"ctb\"), person(\"Olivier\",\"Delmarcell\",   role=\"ctb\"), person(\"Josh\",\"O'Brien\",         role=\"ctb\"), person(\"Dereck\",\"de Mezquita\",   role=\"ctb\"), person(\"Michael\",\"Czekanski\",    role=\"ctb\"), person(\"Dmitry\", \"Shemetov\",     role=\"ctb\"), person(\"Nitish\", \"Jha\",          role=\"ctb\"), person(\"Joshua\", \"Wu\",           role=\"ctb\"), person(\"Iago\", \"Giné-Vázquez\",   role=\"ctb\"), person(\"Anirban\", \"Chetia\",      role=\"ctb\"), person(\"Doris\", \"Amoakohene\",    role=\"ctb\"), person(\"Ivan\", \"Krylov\",         role=\"ctb\") )",
      "NeedsCompilation": "yes",
      "Author": "Tyson Barrett [aut, cre] (<https://orcid.org/0000-0002-2137-1391>), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (<https://orcid.org/0000-0003-0787-087X>), Toby Hocking [aut] (<https://orcid.org/0000-0002-3146-0865>), Benjamin Schwendinger [aut] (<https://orcid.org/0000-0003-3315-8114>), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb], @marc-outins [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Ivan Krylov [ctb]",
      "Maintainer": "Tyson Barrett <t.barrett88@gmail.com>",
      "Repository": "CRAN"
    },
    "dbplyr": {
      "Package": "dbplyr",
      "Version": "2.5.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A 'dplyr' Back End for Databases",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Edgar\", \"Ruiz\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames.  Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author.",
      "License": "MIT + file LICENSE",
      "URL": "https://dbplyr.tidyverse.org/, https://github.com/tidyverse/dbplyr",
      "BugReports": "https://github.com/tidyverse/dbplyr/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "blob (>= 1.2.0)",
        "cli (>= 3.6.1)",
        "DBI (>= 1.1.3)",
        "dplyr (>= 1.1.2)",
        "glue (>= 1.6.2)",
        "lifecycle (>= 1.0.3)",
        "magrittr",
        "methods",
        "pillar (>= 1.9.0)",
        "purrr (>= 1.0.1)",
        "R6 (>= 2.2.2)",
        "rlang (>= 1.1.1)",
        "tibble (>= 3.2.1)",
        "tidyr (>= 1.3.0)",
        "tidyselect (>= 1.2.1)",
        "utils",
        "vctrs (>= 0.6.3)",
        "withr (>= 2.5.0)"
      ],
      "Suggests": [
        "bit64",
        "covr",
        "knitr",
        "Lahman",
        "nycflights13",
        "odbc (>= 1.4.2)",
        "RMariaDB (>= 1.2.2)",
        "rmarkdown",
        "RPostgres (>= 1.4.5)",
        "RPostgreSQL",
        "RSQLite (>= 2.3.1)",
        "testthat (>= 3.1.10)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "TRUE",
      "Encoding": "UTF-8",
      "Language": "en-gb",
      "RoxygenNote": "7.3.1",
      "Collate": "'db-sql.R' 'utils-check.R' 'import-standalone-types-check.R' 'import-standalone-obj-type.R' 'utils.R' 'sql.R' 'escape.R' 'translate-sql-cut.R' 'translate-sql-quantile.R' 'translate-sql-string.R' 'translate-sql-paste.R' 'translate-sql-helpers.R' 'translate-sql-window.R' 'translate-sql-conditional.R' 'backend-.R' 'backend-access.R' 'backend-hana.R' 'backend-hive.R' 'backend-impala.R' 'verb-copy-to.R' 'backend-mssql.R' 'backend-mysql.R' 'backend-odbc.R' 'backend-oracle.R' 'backend-postgres.R' 'backend-postgres-old.R' 'backend-redshift.R' 'backend-snowflake.R' 'backend-spark-sql.R' 'backend-sqlite.R' 'backend-teradata.R' 'build-sql.R' 'data-cache.R' 'data-lahman.R' 'data-nycflights13.R' 'db-escape.R' 'db-io.R' 'db.R' 'dbplyr.R' 'explain.R' 'ident.R' 'import-standalone-s3-register.R' 'join-by-compat.R' 'join-cols-compat.R' 'lazy-join-query.R' 'lazy-ops.R' 'lazy-query.R' 'lazy-select-query.R' 'lazy-set-op-query.R' 'memdb.R' 'optimise-utils.R' 'pillar.R' 'progress.R' 'sql-build.R' 'query-join.R' 'query-select.R' 'query-semi-join.R' 'query-set-op.R' 'query.R' 'reexport.R' 'remote.R' 'rows.R' 'schema.R' 'simulate.R' 'sql-clause.R' 'sql-expr.R' 'src-sql.R' 'src_dbi.R' 'table-name.R' 'tbl-lazy.R' 'tbl-sql.R' 'test-frame.R' 'testthat.R' 'tidyeval-across.R' 'tidyeval.R' 'translate-sql.R' 'utils-format.R' 'verb-arrange.R' 'verb-compute.R' 'verb-count.R' 'verb-distinct.R' 'verb-do-query.R' 'verb-do.R' 'verb-expand.R' 'verb-fill.R' 'verb-filter.R' 'verb-group_by.R' 'verb-head.R' 'verb-joins.R' 'verb-mutate.R' 'verb-pivot-longer.R' 'verb-pivot-wider.R' 'verb-pull.R' 'verb-select.R' 'verb-set-ops.R' 'verb-slice.R' 'verb-summarise.R' 'verb-uncount.R' 'verb-window.R' 'zzz.R'",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Maximilian Girlich [aut], Edgar Ruiz [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "dbscan": {
      "Package": "dbscan",
      "Version": "1.2-0",
      "Source": "Repository",
      "Date": "2024-06-28",
      "Title": "Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms",
      "Authors@R": "c(person(\"Michael\", \"Hahsler\", role = c(\"aut\", \"cre\", \"cph\"), email = \"mhahsler@lyle.smu.edu\", comment = c(ORCID = \"0000-0003-2716-1405\")), person(\"Matthew\", \"Piekenbrock\", role = c(\"aut\", \"cph\")), person(\"Sunil\", \"Arya\", role = c(\"ctb\", \"cph\")), person(\"David\", \"Mount\", role = c(\"ctb\", \"cph\")))",
      "Description": "A fast reimplementation of several density-based algorithms of the DBSCAN family. Includes the clustering algorithms DBSCAN (density-based  spatial clustering of applications with noise) and HDBSCAN (hierarchical  DBSCAN), the ordering algorithm OPTICS (ordering points to identify the  clustering structure), shared nearest neighbor clustering, and the outlier  detection algorithms LOF (local outlier factor) and GLOSH (global-local  outlier score from hierarchies). The implementations use the kd-tree data  structure (from library ANN) for faster k-nearest neighbor search. An R  interface to fast kNN and fixed-radius NN search is also provided.  Hahsler, Piekenbrock and Doran (2019) <doi:10.18637/jss.v091.i01>.",
      "Depends": [
        "R (>= 3.2.0)"
      ],
      "Imports": [
        "Rcpp (>= 1.0.0)",
        "graphics",
        "stats",
        "generics"
      ],
      "LinkingTo": [
        "Rcpp"
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      "Suggests": [
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        "testthat (>= 3.0.0)",
        "dendextend",
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        "knitr",
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      "VignetteBuilder": "knitr",
      "URL": "https://github.com/mhahsler/dbscan",
      "BugReports": "https://github.com/mhahsler/dbscan/issues",
      "License": "GPL (>= 2)",
      "Copyright": "ANN library is copyright by University of Maryland, Sunil Arya and David Mount. All other code is copyright by Michael Hahsler and Matthew Piekenbrock.",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "yes",
      "Author": "Michael Hahsler [aut, cre, cph] (<https://orcid.org/0000-0003-2716-1405>), Matthew Piekenbrock [aut, cph], Sunil Arya [ctb, cph], David Mount [ctb, cph]",
      "Maintainer": "Michael Hahsler <mhahsler@lyle.smu.edu>",
      "Repository": "CRAN"
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    "deldir": {
      "Package": "deldir",
      "Version": "2.0-4",
      "Source": "Repository",
      "Date": "2024-02-27",
      "Title": "Delaunay Triangulation and Dirichlet (Voronoi) Tessellation",
      "Author": "Rolf Turner",
      "Maintainer": "Rolf Turner <rolfturner@posteo.net>",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Suggests": [
        "polyclip"
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      "Imports": [
        "graphics",
        "grDevices"
      ],
      "Description": "Calculates the Delaunay triangulation and the Dirichlet or Voronoi tessellation (with respect to the entire plane) of a planar point set. Plots triangulations and tessellations in various ways.  Clips tessellations to sub-windows. Calculates perimeters of tessellations.  Summarises information about the tiles of the tessellation.\tCalculates the centroidal Voronoi (Dirichlet) tessellation using Lloyd's algorithm.",
      "LazyData": "true",
      "ByteCompile": "true",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "dichromat": {
      "Package": "dichromat",
      "Version": "2.0-0.1",
      "Source": "Repository",
      "Date": "2013-01-23",
      "Title": "Color Schemes for Dichromats",
      "Authors@R": "c(person(given = \"Thomas\", family = \"Lumley\", role = c(\"aut\", \"cre\"), email = \"tlumley@u.washington.edu\"), person(given = \"Ken\", family = \"Knoblauch\", role = \"ctb\", email = \"ken.knoblauch@inserm.fr\"), person(given = \"Scott\", family = \"Waichler\", role = \"ctb\", email = \"scott.waichler@pnl.gov\"), person(given = \"Achim\", family = \"Zeileis\", role = \"ctb\", email = \"Achim.Zeileis@R-project.org\"))",
      "Description": "Collapse red-green or green-blue distinctions to simulate the effects of different types of color-blindness.",
      "Depends": [
        "R (>= 2.10)",
        "stats"
      ],
      "License": "GPL-2",
      "LazyLoad": "Yes",
      "Author": "Thomas Lumley [aut, cre], Ken Knoblauch [ctb], Scott Waichler [ctb], Achim Zeileis [ctb]",
      "Maintainer": "Thomas Lumley <tlumley@u.washington.edu>",
      "Repository": "CRAN",
      "NeedsCompilation": "no"
    },
    "digest": {
      "Package": "digest",
      "Version": "0.6.37",
      "Source": "Repository",
      "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\"), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\"), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\"), person(\"Ion\", \"Suruceanu\", role=\"ctb\"), person(\"Bill\", \"Denney\", role=\"ctb\"), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\"), person(\"Sergey\", \"Fedorov\", role=\"ctb\"), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\"), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\"))",
      "Date": "2024-08-19",
      "Title": "Create Compact Hash Digests of R Objects",
      "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.",
      "URL": "https://github.com/eddelbuettel/digest, https://dirk.eddelbuettel.com/code/digest.html",
      "BugReports": "https://github.com/eddelbuettel/digest/issues",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "utils"
      ],
      "License": "GPL (>= 2)",
      "Suggests": [
        "tinytest",
        "simplermarkdown"
      ],
      "VignetteBuilder": "simplermarkdown",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (<https://orcid.org/0000-0002-7579-5165>), Simon Urbanek [ctb] (<https://orcid.org/0000-0003-2297-1732>), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (<https://orcid.org/0000-0001-5180-0567>), Qiang Kou [ctb] (<https://orcid.org/0000-0001-6786-5453>), Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>), Michel Lang [ctb] (<https://orcid.org/0000-0001-9754-0393>), Viliam Simko [ctb], Kurt Hornik [ctb] (<https://orcid.org/0000-0003-4198-9911>), Radford Neal [ctb] (<https://orcid.org/0000-0002-2473-3407>), Kendon Bell [ctb] (<https://orcid.org/0000-0002-9093-8312>), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (<https://orcid.org/0000-0003-1878-3253>), Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (<https://orcid.org/0000-0001-7813-818X>), Mark van der Loo [ctb] (<https://orcid.org/0000-0002-9807-4686>), Chris Muir [ctb] (<https://orcid.org/0000-0003-2555-3878>), Moritz Beller [ctb] (<https://orcid.org/0000-0003-4852-0526>), Sebastian Campbell [ctb], Winston Chang [ctb] (<https://orcid.org/0000-0002-1576-2126>), Dean Attali [ctb] (<https://orcid.org/0000-0002-5645-3493>), Michael Chirico [ctb] (<https://orcid.org/0000-0003-0787-087X>), Kevin Ushey [ctb]",
      "Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
      "Repository": "CRAN"
    },
    "doFuture": {
      "Package": "doFuture",
      "Version": "1.0.1",
      "Source": "Repository",
      "Title": "Use Foreach to Parallelize via the Future Framework",
      "Depends": [
        "foreach (>= 1.5.0)",
        "future (>= 1.32.0)"
      ],
      "Imports": [
        "future.apply",
        "globals",
        "iterators",
        "parallel",
        "utils"
      ],
      "Suggests": [
        "doRNG (>= 1.8.2)",
        "markdown",
        "R.rsp"
      ],
      "VignetteBuilder": "R.rsp",
      "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")))",
      "Description": "The 'future' package provides a unifying parallelization framework for R that supports many parallel and distributed backends. The 'foreach' package provides a powerful API for iterating over an R expression in parallel. The 'doFuture' package brings the best of the two together. There are two alternative ways to use this package. The recommended approach is to use 'y <- foreach(...) %dofuture% { ... }', which does not require using 'registerDoFuture()' and has many advantages over '%dopar%'. The alternative is the traditional 'foreach' approach by registering the 'foreach' adapter 'registerDoFuture()' and so that 'y <- foreach(...) %dopar% { ... }' runs in parallelizes with the 'future' framework.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "URL": "https://doFuture.futureverse.org, https://github.com/HenrikBengtsson/doFuture",
      "BugReports": "https://github.com/HenrikBengtsson/doFuture/issues",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Henrik Bengtsson [aut, cre, cph] (<https://orcid.org/0000-0002-7579-5165>)",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Repository": "CRAN"
    },
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      "Package": "doParallel",
      "Version": "1.0.17",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Foreach Parallel Adaptor for the 'parallel' Package",
      "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Microsoft\", \"Corporation\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"), person(\"Dan\", \"Tenenbaum\", role=\"ctb\"))",
      "Description": "Provides a parallel backend for the %dopar% function using the parallel package.",
      "Depends": [
        "R (>= 2.14.0)",
        "foreach (>= 1.2.0)",
        "iterators (>= 1.0.0)",
        "parallel",
        "utils"
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      "Suggests": [
        "caret",
        "mlbench",
        "rpart",
        "RUnit"
      ],
      "Enhances": [
        "compiler"
      ],
      "License": "GPL-2",
      "URL": "https://github.com/RevolutionAnalytics/doparallel",
      "BugReports": "https://github.com/RevolutionAnalytics/doparallel/issues",
      "NeedsCompilation": "no",
      "Author": "Folashade Daniel [cre], Microsoft Corporation [aut, cph], Steve Weston [aut], Dan Tenenbaum [ctb]",
      "Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
      "Repository": "CRAN"
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      "Package": "dotCall64",
      "Version": "1.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Enhanced Foreign Function Interface Supporting Long Vectors",
      "Date": "2024-10-03",
      "Authors@R": "c(person(\"Kaspar\", \"Moesinger\", role = c(\"aut\"), email = \"kaspar.moesinger@gmail.com\"),  person(\"Florian\", \"Gerber\", role = c(\"aut\"), email = \"flora.fauna.gerber@gmail.com\", comment = c(ORCID = \"0000-0001-8545-5263\")), person(\"Reinhard\", \"Furrer\", role = c(\"cre\", \"ctb\"), email = \"reinhard.furrer@uzh.ch\", comment = c(ORCID = \"0000-0002-6319-2332\")))",
      "Description": "Provides .C64(), which is an enhanced version of .C() and .Fortran() from the foreign function interface. .C64() supports long vectors, arguments of type 64-bit integer, and provides a mechanism to avoid unnecessary copies of read-only and write-only arguments. This makes it a convenient and fast interface to C/C++ and Fortran code.",
      "License": "GPL (>= 2)",
      "URL": "https://git.math.uzh.ch/reinhard.furrer/dotCall64",
      "BugReports": "https://git.math.uzh.ch/reinhard.furrer/dotCall64/-/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
      "Suggests": [
        "microbenchmark",
        "RhpcBLASctl",
        "RColorBrewer",
        "roxygen2",
        "spam",
        "testthat"
      ],
      "Collate": "'vector_dc.R' 'dotCall64.R' 'zzz.R'",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Kaspar Moesinger [aut], Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>), Reinhard Furrer [cre, ctb] (<https://orcid.org/0000-0002-6319-2332>)",
      "Maintainer": "Reinhard Furrer <reinhard.furrer@uzh.ch>",
      "Repository": "CRAN"
    },
    "dplyr": {
      "Package": "dplyr",
      "Version": "1.1.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Grammar of Data Manipulation",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Kirill\", \"Müller\", role = \"aut\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A fast, consistent tool for working with data frame like objects, both in memory and out of memory.",
      "License": "MIT + file LICENSE",
      "URL": "https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr",
      "BugReports": "https://github.com/tidyverse/dplyr/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
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        "generics",
        "glue (>= 1.3.2)",
        "lifecycle (>= 1.0.3)",
        "magrittr (>= 1.5)",
        "methods",
        "pillar (>= 1.9.0)",
        "R6",
        "rlang (>= 1.1.0)",
        "tibble (>= 3.2.0)",
        "tidyselect (>= 1.2.0)",
        "utils",
        "vctrs (>= 0.6.4)"
      ],
      "Suggests": [
        "bench",
        "broom",
        "callr",
        "covr",
        "DBI",
        "dbplyr (>= 2.2.1)",
        "ggplot2",
        "knitr",
        "Lahman",
        "lobstr",
        "microbenchmark",
        "nycflights13",
        "purrr",
        "rmarkdown",
        "RMySQL",
        "RPostgreSQL",
        "RSQLite",
        "stringi (>= 1.7.6)",
        "testthat (>= 3.1.5)",
        "tidyr (>= 1.3.0)",
        "withr"
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse, shiny, pkgdown, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Lionel Henry [aut], Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>), Davis Vaughan [aut] (<https://orcid.org/0000-0003-4777-038X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
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    "dqrng": {
      "Package": "dqrng",
      "Version": "0.4.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Fast Pseudo Random Number Generators",
      "Authors@R": "c( person(\"Ralf\", \"Stubner\", email = \"ralf.stubner@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0009-1908-106X\")), person(\"daqana GmbH\", role = \"cph\"), person(\"David Blackman\", role = \"cph\", comment = \"Xoroshiro / Xoshiro family\"), person(\"Melissa O'Neill\", email = \"oneill@pcg-random.org\", role = \"cph\", comment = \"PCG family\"), person(\"Sebastiano Vigna\", email = \"vigna@acm.org\", role = \"cph\", comment = \"Xoroshiro / Xoshiro family\"), person(\"Aaron\", \"Lun\", role=\"ctb\"),  person(\"Kyle\", \"Butts\", role = \"ctb\", email = \"kyle.butts@colorado.edu\"), person(\"Henrik\", \"Sloot\", role = \"ctb\"), person(\"Philippe\", \"Grosjean\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-2694-9471\")) )",
      "Description": "Several fast random number generators are provided as C++ header only libraries: The PCG family by O'Neill (2014 <https://www.cs.hmc.edu/tr/hmc-cs-2014-0905.pdf>) as well as the Xoroshiro / Xoshiro family by Blackman and Vigna (2021 <doi:10.1145/3460772>). In addition fast functions for generating random numbers according to a uniform, normal and exponential distribution are included. The latter two use the Ziggurat algorithm originally proposed by Marsaglia and Tsang (2000, <doi:10.18637/jss.v005.i08>). The fast sampling methods support unweighted sampling both with and without replacement. These functions are exported to R and as a C++ interface and are enabled for use with the default 64 bit generator from the PCG family, Xoroshiro128+/++/** and Xoshiro256+/++/** as well as the 64 bit version of the 20 rounds Threefry engine (Salmon et al., 2011, <doi:10.1145/2063384.2063405>) as provided by the package 'sitmo'.",
      "License": "AGPL-3",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "Rcpp (>= 0.12.16)"
      ],
      "LinkingTo": [
        "Rcpp",
        "BH (>= 1.64.0-1)",
        "sitmo (>= 2.0.0)"
      ],
      "RoxygenNote": "7.3.1",
      "Suggests": [
        "BH",
        "testthat",
        "knitr",
        "rmarkdown",
        "mvtnorm (>= 1.2-3)",
        "bench",
        "sitmo"
      ],
      "VignetteBuilder": "knitr",
      "URL": "https://daqana.github.io/dqrng/, https://github.com/daqana/dqrng",
      "BugReports": "https://github.com/daqana/dqrng/issues",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Ralf Stubner [aut, cre] (<https://orcid.org/0009-0009-1908-106X>), daqana GmbH [cph], David Blackman [cph] (Xoroshiro / Xoshiro family), Melissa O'Neill [cph] (PCG family), Sebastiano Vigna [cph] (Xoroshiro / Xoshiro family), Aaron Lun [ctb], Kyle Butts [ctb], Henrik Sloot [ctb], Philippe Grosjean [ctb] (<https://orcid.org/0000-0002-2694-9471>)",
      "Maintainer": "Ralf Stubner <ralf.stubner@gmail.com>",
      "Repository": "CRAN"
    },
    "edgeR": {
      "Package": "edgeR",
      "Version": "4.2.2",
      "Source": "Bioconductor",
      "Date": "2024-10-10",
      "Title": "Empirical Analysis of Digital Gene Expression Data in R",
      "Description": "Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce read counts, including ChIP-seq, ATAC-seq, Bisulfite-seq, SAGE and CAGE.",
      "Author": "Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Lizhong Chen, Pedro Baldoni, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth",
      "Maintainer": "Yunshun Chen <yuchen@wehi.edu.au>, Gordon Smyth <smyth@wehi.edu.au>, Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>, Mark Robinson <mark.robinson@imls.uzh.ch>",
      "License": "GPL (>=2)",
      "Depends": [
        "R (>= 3.6.0)",
        "limma (>= 3.41.5)"
      ],
      "Imports": [
        "methods",
        "graphics",
        "stats",
        "utils",
        "locfit",
        "Rcpp"
      ],
      "Suggests": [
        "jsonlite",
        "readr",
        "rhdf5",
        "splines",
        "knitr",
        "AnnotationDbi",
        "Biobase",
        "BiocStyle",
        "SummarizedExperiment",
        "org.Hs.eg.db",
        "Matrix",
        "SeuratObject"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "VignetteBuilder": "knitr",
      "URL": "https://bioinf.wehi.edu.au/edgeR/, https://bioconductor.org/packages/edgeR",
      "biocViews": "GeneExpression, Transcription, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, DifferentialMethylation, GeneSetEnrichment, Pathways, Genetics, DNAMethylation, Bayesian, Clustering, ChIPSeq, Regression, TimeCourse, Sequencing, RNASeq, BatchEffect, SAGE, Normalization, QualityControl, MultipleComparison, BiomedicalInformatics, CellBiology, FunctionalGenomics, Epigenetics, Genetics, ImmunoOncology, SystemsBiology, Transcriptomics, SingleCell",
      "NeedsCompilation": "yes",
      "git_url": "https://git.bioconductor.org/packages/edgeR",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "d50e802",
      "git_last_commit_date": "2024-10-10",
      "Repository": "Bioconductor 3.19"
    },
    "evaluate": {
      "Package": "evaluate",
      "Version": "1.0.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Parsing and Evaluation Tools that Provide More Details than the Default",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Yihui\", \"Xie\", role = \"aut\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Michael\", \"Lawrence\", role = \"ctb\"), person(\"Thomas\", \"Kluyver\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Adam\", \"Ryczkowski\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Michel\", \"Lang\", role = \"ctb\"), person(\"Karolis\", \"Koncevičius\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.",
      "License": "MIT + file LICENSE",
      "URL": "https://evaluate.r-lib.org/, https://github.com/r-lib/evaluate",
      "BugReports": "https://github.com/r-lib/evaluate/issues",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Suggests": [
        "covr",
        "ggplot2 (>= 3.3.6)",
        "lattice",
        "methods",
        "rlang",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (<https://orcid.org/0000-0003-0645-5666>), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevičius [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "evd": {
      "Package": "evd",
      "Version": "2.3-7.1",
      "Source": "Repository",
      "Date": "2024-04-23",
      "Title": "Functions for Extreme Value Distributions",
      "Author": "Alec Stephenson. Function fbvpot by Chris Ferro.",
      "Maintainer": "Alec Stephenson <alec_stephenson@hotmail.com>",
      "Imports": [
        "stats",
        "grDevices",
        "graphics"
      ],
      "Suggests": [
        "interp"
      ],
      "Description": "Extends simulation, distribution, quantile and density functions to univariate and multivariate parametric extreme value distributions, and provides fitting functions which calculate maximum likelihood estimates for univariate and bivariate maxima models, and for univariate and bivariate threshold models.",
      "LazyData": "yes",
      "License": "GPL-3",
      "NeedsCompilation": "yes",
      "Repository": "CRAN",
      "Depends": [
        "R (>= 2.10)"
      ]
    },
    "evmix": {
      "Package": "evmix",
      "Version": "2.12",
      "Source": "Repository",
      "Title": "Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation",
      "Date": "2019-09-02",
      "Author": "Carl Scarrott, Yang Hu and Alfadino Akbar, University of Canterbury",
      "Maintainer": "Carl Scarrott <carl.scarrott@canterbury.ac.nz>",
      "Depends": [
        "stats",
        "graphics",
        "MASS",
        "splines",
        "gsl",
        "SparseM",
        "grDevices"
      ],
      "Description": "The usual distribution functions, maximum likelihood inference and model diagnostics for univariate stationary extreme value mixture models are provided. Kernel density estimation including various boundary corrected kernel density estimation methods and a wide choice of kernels, with cross-validation likelihood based bandwidth estimator. Reasonable consistency with the base functions in the 'evd' package is provided, so that users can safely interchange most code.",
      "License": "GPL-3",
      "URL": "http://www.math.canterbury.ac.nz/~c.scarrott/evmix",
      "Repository": "CRAN",
      "RoxygenNote": "6.1.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no"
    },
    "fansi": {
      "Package": "fansi",
      "Version": "1.0.6",
      "Source": "Repository",
      "Title": "ANSI Control Sequence Aware String Functions",
      "Description": "Counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.",
      "Authors@R": "c( person(\"Brodie\", \"Gaslam\", email=\"brodie.gaslam@yahoo.com\", role=c(\"aut\", \"cre\")), person(\"Elliott\", \"Sales De Andrade\", role=\"ctb\"), person(family=\"R Core Team\", email=\"R-core@r-project.org\", role=\"cph\", comment=\"UTF8 byte length calcs from src/util.c\" ))",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "License": "GPL-2 | GPL-3",
      "URL": "https://github.com/brodieG/fansi",
      "BugReports": "https://github.com/brodieG/fansi/issues",
      "VignetteBuilder": "knitr",
      "Suggests": [
        "unitizer",
        "knitr",
        "rmarkdown"
      ],
      "Imports": [
        "grDevices",
        "utils"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "Collate": "'constants.R' 'fansi-package.R' 'internal.R' 'load.R' 'misc.R' 'nchar.R' 'strwrap.R' 'strtrim.R' 'strsplit.R' 'substr2.R' 'trimws.R' 'tohtml.R' 'unhandled.R' 'normalize.R' 'sgr.R'",
      "NeedsCompilation": "yes",
      "Author": "Brodie Gaslam [aut, cre], Elliott Sales De Andrade [ctb], R Core Team [cph] (UTF8 byte length calcs from src/util.c)",
      "Maintainer": "Brodie Gaslam <brodie.gaslam@yahoo.com>",
      "Repository": "CRAN"
    },
    "farver": {
      "Package": "farver",
      "Version": "2.1.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "High Performance Colour Space Manipulation",
      "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Berendea\", \"Nicolae\", role = \"aut\", comment = \"Author of the ColorSpace C++ library\"), person(\"Romain\", \"François\", , \"romain@purrple.cat\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The encoding of colour can be handled in many different ways, using different colour spaces. As different colour spaces have different uses, efficient conversion between these representations are important. The 'farver' package provides a set of functions that gives access to very fast colour space conversion and comparisons implemented in C++, and offers speed improvements over the 'convertColor' function in the 'grDevices' package.",
      "License": "MIT + file LICENSE",
      "URL": "https://farver.data-imaginist.com, https://github.com/thomasp85/farver",
      "BugReports": "https://github.com/thomasp85/farver/issues",
      "Suggests": [
        "covr",
        "testthat (>= 3.0.0)"
      ],
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>), Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
    },
    "fastDummies": {
      "Package": "fastDummies",
      "Version": "1.7.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Fast Creation of Dummy (Binary) Columns and Rows from Categorical Variables",
      "Authors@R": "c( person(\"Jacob\", \"Kaplan\", email = \"jkkaplan6@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0601-0387\")),  person(\"Benjamin\", \"Schlegel\", email = \"kontakt@benjaminschlegl.ch\", role =  \"ctb\"))",
      "Description": "Creates dummy columns from columns that have categorical variables (character or factor types). You can also specify which columns to make dummies out of, or which columns to ignore. Also creates dummy rows from character, factor, and Date columns. This package provides a significant speed increase from creating dummy variables through model.matrix().",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Imports": [
        "data.table",
        "tibble",
        "stringr"
      ],
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "URL": "https://github.com/jacobkap/fastDummies, https://jacobkap.github.io/fastDummies/",
      "BugReports": "https://github.com/jacobkap/fastDummies/issues",
      "RoxygenNote": "7.2.3",
      "Suggests": [
        "testthat (>= 2.1.0)",
        "knitr",
        "rmarkdown",
        "covr",
        "spelling"
      ],
      "VignetteBuilder": "knitr",
      "Language": "en-US",
      "NeedsCompilation": "no",
      "Author": "Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>), Benjamin Schlegel [ctb]",
      "Maintainer": "Jacob Kaplan <jkkaplan6@gmail.com>",
      "Repository": "CRAN"
    },
    "fastmap": {
      "Package": "fastmap",
      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "Fast Data Structures",
      "Authors@R": "c( person(\"Winston\", \"Chang\", email = \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\") )",
      "Description": "Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids this memory leak issue by implementing the map using data structures in C++.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "Suggests": [
        "testthat (>= 2.1.1)"
      ],
      "URL": "https://r-lib.github.io/fastmap/, https://github.com/r-lib/fastmap",
      "BugReports": "https://github.com/r-lib/fastmap/issues",
      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd], Tessil [cph] (hopscotch_map library)",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "CRAN"
    },
    "fields": {
      "Package": "fields",
      "Version": "16.3",
      "Source": "Repository",
      "Date": "2024-09-30",
      "Title": "Tools for Spatial Data",
      "Authors@R": "c( person(\"Douglas\", \"Nychka\", role = c(\"aut\", \"cre\"), email = \"douglasnychka@gmail.com\"), person(\"Reinhard\", \"Furrer\", role = c(\"aut\"), email = \"reinhard.furrer@math.uzh.ch\"), person(\"John\", \"Paige\", role = c(\"aut\"), email = \"paigejo@uw.edu\"), person(\"Stephan\", \"Sain\", role = \"aut\", email = \"sainsr2@gmail.com\"), person(\"Florian\", \"Gerber\", role = \"aut\", email = \"flora.fauna.gerber@gmail.com\"), person(\"Matthew\", \"Iverson\", role = \"aut\", email = \"miverson@mines.edu\"), person(\"Rider\", \"Johnson\", role = \"aut\", email = \"riderjohnson@mines.edu\") )",
      "Maintainer": "Douglas Nychka <douglasnychka@gmail.com>",
      "Description": "For curve, surface and function fitting with an emphasis on splines, spatial data, geostatistics,  and spatial statistics. The major methods include cubic, and thin plate splines, Kriging, and compactly supported covariance functions for large data sets. The splines and Kriging methods are supported by functions that can determine the smoothing parameter (nugget and sill variance) and other covariance function parameters by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to use function that also estimates the correlation scale (range parameter).  A major feature is that any covariance function implemented in R and following a simple format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview.  The fields source code is deliberately commented and provides useful explanations of numerical details as a companion to the manual pages. The commented source code can be viewed by expanding the source code version and looking in the R subdirectory. The reference for fields can be generated by the citation function in R and has DOI <doi:10.5065/D6W957CT>. Development of this package was supported in part by the National Science Foundation  Grant 1417857,  the National Center for Atmospheric Research, and Colorado School of Mines. See the Fields URL for a vignette on using this package and some background on spatial statistics.",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/dnychka/fieldsRPackage",
      "Depends": [
        "R (>= 3.5.0)",
        "methods",
        "spam",
        "viridisLite"
      ],
      "Imports": [
        "maps"
      ],
      "NeedsCompilation": "yes",
      "Repository": "CRAN",
      "Author": "Douglas Nychka [aut, cre], Reinhard Furrer [aut], John Paige [aut], Stephan Sain [aut], Florian Gerber [aut], Matthew Iverson [aut], Rider Johnson [aut]"
    },
    "filelock": {
      "Package": "filelock",
      "Version": "1.0.3",
      "Source": "Repository",
      "Title": "Portable File Locking",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Place an exclusive or shared lock on a file. It uses 'LockFile' on Windows and 'fcntl' locks on Unix-like systems.",
      "License": "MIT + file LICENSE",
      "URL": "https://r-lib.github.io/filelock/, https://github.com/r-lib/filelock",
      "BugReports": "https://github.com/r-lib/filelock/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Suggests": [
        "callr (>= 2.0.0)",
        "covr",
        "testthat (>= 3.0.0)"
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      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
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      "Version": "1.2-1",
      "Source": "Repository",
      "Title": "Help to Fit of a Parametric Distribution to Non-Censored or Censored Data",
      "Authors@R": "c(person(\"Marie-Laure\", \"Delignette-Muller\", role = \"aut\", email = \"marielaure.delignettemuller@vetagro-sup.fr\", comment = c(ORCID = \"0000-0001-5453-3994\")), person(\"Christophe\", \"Dutang\", role = \"aut\", email = \"christophe.dutang@ensimag.fr\", comment = c(ORCID = \"0000-0001-6732-1501\")), person(\"Regis\", \"Pouillot\", role = \"ctb\"), person(\"Jean-Baptiste\", \"Denis\", role = \"ctb\"), person(\"Aurélie\", \"Siberchicot\", role = c(\"aut\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\")))",
      "Description": "Extends the fitdistr() function (of the MASS package) with several functions  to help the fit of a parametric distribution to non-censored or censored data.  Censored data may contain left censored, right censored and interval censored values,  with several lower and upper bounds. In addition to maximum likelihood estimation (MLE),  the package provides moment matching (MME), quantile matching (QME), maximum goodness-of-fit  estimation (MGE) and maximum spacing estimation (MSE) methods (available only for  non-censored data). Weighted versions of MLE, MME, QME and MSE are available. See e.g.  Casella & Berger (2002), Statistical inference, Pacific Grove, for a general introduction  to parametric estimation.",
      "Depends": [
        "R (>= 3.5.0)",
        "MASS",
        "grDevices",
        "survival",
        "methods"
      ],
      "Imports": [
        "stats",
        "rlang"
      ],
      "Suggests": [
        "actuar",
        "rgenoud",
        "mc2d",
        "gamlss.dist",
        "knitr",
        "ggplot2",
        "GeneralizedHyperbolic",
        "rmarkdown",
        "Hmisc",
        "bookdown"
      ],
      "VignetteBuilder": "knitr",
      "BuildVignettes": "true",
      "License": "GPL (>= 2)",
      "Encoding": "UTF-8",
      "URL": "https://lbbe-software.github.io/fitdistrplus/, https://lbbe.univ-lyon1.fr/fr/fitdistrplus, https://github.com/lbbe-software/fitdistrplus",
      "BugReports": "https://github.com/lbbe-software/fitdistrplus/issues",
      "Contact": "Marie-Laure Delignette-Muller <marielaure.delignettemuller@vetagro-sup.fr> or Christophe Dutang <christophe.dutang@ensimag.fr>",
      "NeedsCompilation": "no",
      "Author": "Marie-Laure Delignette-Muller [aut] (<https://orcid.org/0000-0001-5453-3994>), Christophe Dutang [aut] (<https://orcid.org/0000-0001-6732-1501>), Regis Pouillot [ctb], Jean-Baptiste Denis [ctb], Aurélie Siberchicot [aut, cre] (<https://orcid.org/0000-0002-7638-8318>)",
      "Maintainer": "Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>",
      "Repository": "CRAN"
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      "Package": "fontawesome",
      "Version": "0.5.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Easily Work with 'Font Awesome' Icons",
      "Description": "Easily and flexibly insert 'Font Awesome' icons into 'R Markdown' documents and 'Shiny' apps. These icons can be inserted into HTML content through inline 'SVG' tags or 'i' tags. There is also a utility function for exporting 'Font Awesome' icons as 'PNG' images for those situations where raster graphics are needed.",
      "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"ctb\"), person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"), comment = \"Font-Awesome font\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/rstudio/fontawesome, https://rstudio.github.io/fontawesome/",
      "BugReports": "https://github.com/rstudio/fontawesome/issues",
      "Encoding": "UTF-8",
      "ByteCompile": "true",
      "RoxygenNote": "7.2.3",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "rlang (>= 1.0.6)",
        "htmltools (>= 0.5.1.1)"
      ],
      "Suggests": [
        "covr",
        "dplyr (>= 1.0.8)",
        "knitr (>= 1.31)",
        "testthat (>= 3.0.0)",
        "rsvg"
      ],
      "Config/testthat/edition": "3",
      "NeedsCompilation": "no",
      "Author": "Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), Winston Chang [ctb], Dave Gandy [ctb, cph] (Font-Awesome font), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Richard Iannone <rich@posit.co>",
      "Repository": "CRAN"
    },
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      "Package": "forcats",
      "Version": "1.0.0",
      "Source": "Repository",
      "Title": "Tools for Working with Categorical Variables (Factors)",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into other, 'anonymising', and manually 'recoding').",
      "License": "MIT + file LICENSE",
      "URL": "https://forcats.tidyverse.org/, https://github.com/tidyverse/forcats",
      "BugReports": "https://github.com/tidyverse/forcats/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "cli (>= 3.4.0)",
        "glue",
        "lifecycle",
        "magrittr",
        "rlang (>= 1.0.0)",
        "tibble"
      ],
      "Suggests": [
        "covr",
        "dplyr",
        "ggplot2",
        "knitr",
        "readr",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], RStudio [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "foreach": {
      "Package": "foreach",
      "Version": "1.5.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Provides Foreach Looping Construct",
      "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Hong\", \"Ooi\", role=\"ctb\"), person(\"Rich\", \"Calaway\", role=\"ctb\"), person(\"Microsoft\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"))",
      "Description": "Support for the foreach looping construct.  Foreach is an idiom that allows for iterating over elements in a collection, without the use of an explicit loop counter.  This package in particular is intended to be used for its return value, rather than for its side effects.  In that sense, it is similar to the standard lapply function, but doesn't require the evaluation of a function.  Using foreach without side effects also facilitates executing the loop in parallel.",
      "License": "Apache License (== 2.0)",
      "URL": "https://github.com/RevolutionAnalytics/foreach",
      "BugReports": "https://github.com/RevolutionAnalytics/foreach/issues",
      "Depends": [
        "R (>= 2.5.0)"
      ],
      "Imports": [
        "codetools",
        "utils",
        "iterators"
      ],
      "Suggests": [
        "randomForest",
        "doMC",
        "doParallel",
        "testthat",
        "knitr",
        "rmarkdown"
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      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.1.1",
      "Collate": "'callCombine.R' 'foreach.R' 'do.R' 'foreach-ext.R' 'foreach-pkg.R' 'getDoPar.R' 'getDoSeq.R' 'getsyms.R' 'iter.R' 'nextElem.R' 'onLoad.R' 'setDoPar.R' 'setDoSeq.R' 'times.R' 'utils.R'",
      "NeedsCompilation": "no",
      "Author": "Folashade Daniel [cre], Hong Ooi [ctb], Rich Calaway [ctb], Microsoft [aut, cph], Steve Weston [aut]",
      "Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
      "Repository": "CRAN"
    },
    "formatR": {
      "Package": "formatR",
      "Version": "1.14",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Format R Code Automatically",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Ed\", \"Lee\", role = \"ctb\"), person(\"Eugene\", \"Ha\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person() )",
      "Description": "Provides a function tidy_source() to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy. There is also a Shiny app as a user interface in this package (see tidy_app()).",
      "Depends": [
        "R (>= 3.2.3)"
      ],
      "Suggests": [
        "rstudioapi",
        "shiny",
        "testit",
        "rmarkdown",
        "knitr"
      ],
      "License": "GPL",
      "URL": "https://github.com/yihui/formatR",
      "BugReports": "https://github.com/yihui/formatR/issues",
      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Ed Lee [ctb], Eugene Ha [ctb], Kohske Takahashi [ctb], Pavel Krivitsky [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
    "fs": {
      "Package": "fs",
      "Version": "1.6.5",
      "Source": "Repository",
      "Title": "Cross-Platform File System Operations Based on 'libuv'",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.",
      "License": "MIT + file LICENSE",
      "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs",
      "BugReports": "https://github.com/r-lib/fs/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "methods"
      ],
      "Suggests": [
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        "crayon",
        "knitr",
        "pillar (>= 1.0.0)",
        "rmarkdown",
        "spelling",
        "testthat (>= 3.0.0)",
        "tibble (>= 1.1.0)",
        "vctrs (>= 0.3.0)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Copyright": "file COPYRIGHTS",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.2.3",
      "SystemRequirements": "GNU make",
      "NeedsCompilation": "yes",
      "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "futile.logger": {
      "Package": "futile.logger",
      "Version": "1.4.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Logging Utility for R",
      "Date": "2016-07-10",
      "Author": "Brian Lee Yung Rowe",
      "Maintainer": "Brian Lee Yung Rowe <r@zatonovo.com>",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "utils",
        "lambda.r (>= 1.1.0)",
        "futile.options"
      ],
      "Suggests": [
        "testthat",
        "jsonlite"
      ],
      "Description": "Provides a simple yet powerful logging utility. Based loosely on log4j, futile.logger takes advantage of R idioms to make logging a convenient and easy to use replacement for cat and print statements.",
      "License": "LGPL-3",
      "LazyLoad": "yes",
      "NeedsCompilation": "no",
      "ByteCompile": "yes",
      "Collate": "'options.R' 'appender.R' 'constants.R' 'layout.R' 'logger.R' 'scat.R' 'futile.logger-package.R'",
      "RoxygenNote": "5.0.1",
      "Repository": "CRAN"
    },
    "futile.options": {
      "Package": "futile.options",
      "Version": "1.0.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Futile Options Management",
      "Date": "2018-04-20",
      "Author": "Brian Lee Yung Rowe",
      "Maintainer": "Brian Lee Yung Rowe <r@zatonovo.com>",
      "Depends": [
        "R (>= 2.8.0)"
      ],
      "Description": "A scoped options management framework. Used in other packages.",
      "License": "LGPL-3",
      "LazyLoad": "yes",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "future": {
      "Package": "future",
      "Version": "1.34.0",
      "Source": "Repository",
      "Title": "Unified Parallel and Distributed Processing in R for Everyone",
      "Imports": [
        "digest",
        "globals (>= 0.16.1)",
        "listenv (>= 0.8.0)",
        "parallel",
        "parallelly (>= 1.38.0)",
        "utils"
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      "Suggests": [
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        "RhpcBLASctl",
        "R.rsp",
        "markdown"
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      "VignetteBuilder": "R.rsp",
      "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")))",
      "Description": "The purpose of this package is to provide a lightweight and unified Future API for sequential and parallel processing of R expression via futures.  The simplest way to evaluate an expression in parallel is to use `x %<-% { expression }` with `plan(multisession)`. This package implements sequential, multicore, multisession, and cluster futures.  With these, R expressions can be evaluated on the local machine, in parallel a set of local machines, or distributed on a mix of local and remote machines. Extensions to this package implement additional backends for processing futures via compute cluster schedulers, etc. Because of its unified API, there is no need to modify any code in order switch from sequential on the local machine to, say, distributed processing on a remote compute cluster. Another strength of this package is that global variables and functions are automatically identified and exported as needed, making it straightforward to tweak existing code to make use of futures.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "ByteCompile": "TRUE",
      "URL": "https://future.futureverse.org, https://github.com/HenrikBengtsson/future",
      "BugReports": "https://github.com/HenrikBengtsson/future/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Henrik Bengtsson [aut, cre, cph] (<https://orcid.org/0000-0002-7579-5165>)",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Repository": "CRAN"
    },
    "future.apply": {
      "Package": "future.apply",
      "Version": "1.11.3",
      "Source": "Repository",
      "Title": "Apply Function to Elements in Parallel using Futures",
      "Depends": [
        "R (>= 3.2.0)",
        "future (>= 1.28.0)"
      ],
      "Imports": [
        "globals (>= 0.16.1)",
        "parallel",
        "utils"
      ],
      "Suggests": [
        "datasets",
        "stats",
        "tools",
        "listenv (>= 0.8.0)",
        "R.rsp",
        "markdown"
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      "VignetteBuilder": "R.rsp",
      "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"R Core Team\", role = c(\"cph\", \"ctb\")))",
      "Description": "Implementations of apply(), by(), eapply(), lapply(), Map(), .mapply(), mapply(), replicate(), sapply(), tapply(), and vapply() that can be resolved using any future-supported backend, e.g. parallel on the local machine or distributed on a compute cluster. These future_*apply() functions come with the same pros and cons as the corresponding base-R *apply() functions but with the additional feature of being able to be processed via the future framework <doi:10.32614/RJ-2021-048>.",
      "License": "GPL (>= 2)",
      "LazyLoad": "TRUE",
      "URL": "https://future.apply.futureverse.org, https://github.com/futureverse/future.apply",
      "BugReports": "https://github.com/futureverse/future.apply/issues",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Henrik Bengtsson [aut, cre, cph] (<https://orcid.org/0000-0002-7579-5165>), R Core Team [cph, ctb]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Repository": "CRAN"
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      "Version": "0.1.3",
      "Source": "Repository",
      "Title": "Common S3 Generics not Provided by Base R Methods Related to Model Fitting",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"Max\", \"Kuhn\", , \"max@rstudio.com\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@rstudio.com\", role = \"aut\"), person(\"RStudio\", role = \"cph\") )",
      "Description": "In order to reduce potential package dependencies and conflicts, generics provides a number of commonly used S3 generics.",
      "License": "MIT + file LICENSE",
      "URL": "https://generics.r-lib.org, https://github.com/r-lib/generics",
      "BugReports": "https://github.com/r-lib/generics/issues",
      "Depends": [
        "R (>= 3.2)"
      ],
      "Imports": [
        "methods"
      ],
      "Suggests": [
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        "pkgload",
        "testthat (>= 3.0.0)",
        "tibble",
        "withr"
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      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.0",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Max Kuhn [aut], Davis Vaughan [aut], RStudio [cph]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "getopt": {
      "Package": "getopt",
      "Version": "1.20.4",
      "Source": "Repository",
      "Encoding": "UTF-8",
      "Type": "Package",
      "Title": "C-Like 'getopt' Behavior",
      "Authors@R": "c(person(\"Trevor L\", \"Davis\", role=c(\"aut\", \"cre\"), email=\"trevor.l.davis@gmail.com\", comment = c(ORCID = \"0000-0001-6341-4639\")), person(\"Allen\", \"Day\", role=\"aut\", comment=\"Original package author\"), person(\"Roman\", \"Zenka\", role=\"ctb\"))",
      "URL": "https://github.com/trevorld/r-getopt",
      "Imports": [
        "stats"
      ],
      "BugReports": "https://github.com/trevorld/r-getopt/issues",
      "Description": "Package designed to be used with Rscript to write '#!' shebang scripts that accept short and long flags/options. Many users will prefer using instead the packages optparse or argparse which add extra features like automatically generated help option and usage, support for default values, positional argument support, etc.",
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      "Config/testthat/edition": "3",
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      "Author": "Trevor L Davis [aut, cre] (<https://orcid.org/0000-0001-6341-4639>), Allen Day [aut] (Original package author), Roman Zenka [ctb]",
      "Maintainer": "Trevor L Davis <trevor.l.davis@gmail.com>",
      "Repository": "CRAN"
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      "Title": "Alluvial Plots in 'ggplot2'",
      "Authors@R": "c( person(given = \"Jason Cory\", family = \"Brunson\", role = c(\"aut\", \"cre\"), email = \"cornelioid@gmail.com\"), person(given = \"Quentin D.\", family = \"Read\", role = 'aut'))",
      "Maintainer": "Jason Cory Brunson <cornelioid@gmail.com>",
      "Description": "Alluvial plots use variable-width ribbons and stacked bar plots to represent multi-dimensional or repeated-measures data with categorical or ordinal variables; see Riehmann, Hanfler, and Froehlich (2005) <doi:10.1109/INFVIS.2005.1532152> and Rosvall and Bergstrom (2010) <doi:10.1371/journal.pone.0008694>. Alluvial plots are statistical graphics in the sense of Wilkinson (2006) <doi:10.1007/0-387-28695-0>; they share elements with Sankey diagrams and parallel sets plots but are uniquely determined from the data and a small set of parameters. This package extends Wickham's (2010) <doi:10.1198/jcgs.2009.07098> layered grammar of graphics to generate alluvial plots from tidy data.",
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        "R (>= 3.6)",
        "ggplot2 (>= 2.2)"
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      "URL": "http://corybrunson.github.io/ggalluvial/",
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      "Title": "Categorical Scatter (Violin Point) Plots",
      "Date": "2023-04-28",
      "Authors@R": "c( person(given=\"Erik\", family=\"Clarke\", role=c(\"aut\", \"cre\"), email=\"erikclarke@gmail.com\"), person(given=\"Scott\", family=\"Sherrill-Mix\", role=c(\"aut\"), email=\"sherrillmix@gmail.com\"), person(given=\"Charlotte\", family=\"Dawson\", role=c(\"aut\"), email=\"csdaw@outlook.com\"))",
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      "URL": "https://github.com/eclarke/ggbeeswarm",
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      "Author": "Erik Clarke [aut, cre], Scott Sherrill-Mix [aut], Charlotte Dawson [aut]",
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      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
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      "URL": "https://ggforce.data-imaginist.com, https://github.com/thomasp85/ggforce",
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      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), RStudio [cph]",
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      "Source": "Repository",
      "Language": "en-GB",
      "Title": "Multiple Fill and Colour Scales in 'ggplot2'",
      "Authors@R": "person(given = \"Elio\", family = \"Campitelli\", role = c(\"cre\", \"aut\"), email = \"eliocampitelli@gmail.com\", comment = c(ORCID = \"0000-0002-7742-9230\"))",
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      "License": "GPL-3",
      "URL": "https://eliocamp.github.io/ggnewscale/, https://github.com/eliocamp/ggnewscale",
      "BugReports": "https://github.com/eliocamp/ggnewscale/issues",
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    "ggplot2": {
      "Package": "ggplot2",
      "Version": "3.5.1",
      "Source": "Repository",
      "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A system for 'declaratively' creating graphics, based on \"The Grammar of Graphics\". You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details.",
      "License": "MIT + file LICENSE",
      "URL": "https://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2",
      "BugReports": "https://github.com/tidyverse/ggplot2/issues",
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      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (<https://orcid.org/0000-0002-5147-4711>), Kohske Takahashi [aut], Claus Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Kara Woo [aut] (<https://orcid.org/0000-0002-5125-4188>), Hiroaki Yutani [aut] (<https://orcid.org/0000-0002-3385-7233>), Dewey Dunnington [aut] (<https://orcid.org/0000-0002-9415-4582>), Teun van den Brand [aut] (<https://orcid.org/0000-0002-9335-7468>), Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
    },
    "ggraph": {
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      "Version": "2.2.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "An Implementation of Grammar of Graphics for Graphs and Networks",
      "Authors@R": "c(person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"cre\", \"aut\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\")), person(given = \"RStudio\", role = \"cph\"))",
      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
      "Description": "The grammar of graphics as implemented in ggplot2 is a poor fit for graph and network visualizations due to its reliance on tabular data input. ggraph is an extension of the ggplot2 API tailored to graph visualizations and provides the same flexible approach to building up plots layer by layer.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
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      "Authors@R": "c(person(\"Viktor\", \"Petukhov\", email = \"viktor.s.petukhov@ya.ru\", role = c(\"aut\", \"cph\")), person(\"Teun\", \"van den Brand\", email = \"t.vd.brand@nki.nl\", role=c(\"aut\")), person(\"Evan\", \"Biederstedt\", email = \"evan.biederstedt@gmail.com\", role=c(\"cre\", \"aut\")))",
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      "Encoding": "UTF-8",
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      "Version": "0.9.6",
      "Source": "Repository",
      "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )",
      "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'",
      "Description": "Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.",
      "Depends": [
        "R (>= 3.0.0)",
        "ggplot2 (>= 2.2.0)"
      ],
      "Imports": [
        "grid",
        "Rcpp",
        "rlang (>= 0.3.0)",
        "scales (>= 0.5.0)",
        "withr (>= 2.5.0)"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown",
        "testthat",
        "svglite",
        "vdiffr",
        "gridExtra",
        "ggpp",
        "patchwork",
        "devtools",
        "prettydoc",
        "ggbeeswarm",
        "dplyr",
        "magrittr",
        "readr",
        "stringr"
      ],
      "VignetteBuilder": "knitr",
      "License": "GPL-3 | file LICENSE",
      "URL": "https://ggrepel.slowkow.com/, https://github.com/slowkow/ggrepel",
      "BugReports": "https://github.com/slowkow/ggrepel/issues",
      "RoxygenNote": "7.3.1",
      "LinkingTo": [
        "Rcpp"
      ],
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Kamil Slowikowski [aut, cre] (<https://orcid.org/0000-0002-2843-6370>), Alicia Schep [ctb] (<https://orcid.org/0000-0002-3915-0618>), Sean Hughes [ctb] (<https://orcid.org/0000-0002-9409-9405>), Trung Kien Dang [ctb] (<https://orcid.org/0000-0001-7562-6495>), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (<https://orcid.org/0000-0003-4920-3880>), Zhian N Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Thompson Ryan [ctb] (<https://orcid.org/0000-0002-0450-8181>), Dervieux Christophe [ctb] (<https://orcid.org/0000-0003-4474-2498>), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>), Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>), Michał Krassowski [ctb] (<https://orcid.org/0000-0002-9638-7785>), Michael Chirico [ctb] (<https://orcid.org/0000-0003-0787-087X>), Pedro Aphalo [ctb] (<https://orcid.org/0000-0003-3385-972X>), Francis Barton [ctb]",
      "Maintainer": "Kamil Slowikowski <kslowikowski@gmail.com>",
      "Repository": "CRAN"
    },
    "ggridges": {
      "Package": "ggridges",
      "Version": "0.5.6",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Ridgeline Plots in 'ggplot2'",
      "Authors@R": "person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\", \"cre\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") )",
      "Description": "Ridgeline plots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in 'ggplot2'.",
      "URL": "https://wilkelab.org/ggridges/",
      "BugReports": "https://github.com/wilkelab/ggridges/issues",
      "Depends": [
        "R (>= 3.2)"
      ],
      "Imports": [
        "ggplot2 (>= 3.4.0)",
        "grid (>= 3.0.0)",
        "scales (>= 0.4.1)",
        "withr (>= 2.1.1)"
      ],
      "License": "GPL-2 | file LICENSE",
      "LazyData": "true",
      "Suggests": [
        "covr",
        "dplyr",
        "patchwork",
        "ggplot2movies",
        "forcats",
        "knitr",
        "rmarkdown",
        "testthat",
        "vdiffr"
      ],
      "VignetteBuilder": "knitr",
      "Collate": "'data.R' 'ggridges.R' 'geoms.R' 'geomsv.R' 'geoms-gradient.R' 'geom-density-line.R' 'position.R' 'scale-cyclical.R' 'scale-point.R' 'scale-vline.R' 'stats.R' 'theme.R' 'utils_ggplot2.R' 'utils.R'",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Claus O. Wilke [aut, cre] (<https://orcid.org/0000-0002-7470-9261>)",
      "Maintainer": "Claus O. Wilke <wilke@austin.utexas.edu>",
      "Repository": "CRAN"
    },
    "glmGamPoi": {
      "Package": "glmGamPoi",
      "Version": "1.16.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "Fit a Gamma-Poisson Generalized Linear Model",
      "Authors@R": "c(person(\"Constantin\", \"Ahlmann-Eltze\", email = \"artjom31415@googlemail.com\",  role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3762-068X\")), person(\"Nathan\", \"Lubock\", email=\"lubock.nathan@gmail.com\", role = \"ctb\",  comment = c(ORCID = \"0000-0001-8064-2465\")), person(\"Michael\", \"Love\", email=\"michaelisaiahlove@gmail.com\", role = \"ctb\"))",
      "Description": "Fit linear models to overdispersed count data. The package can estimate the overdispersion and fit repeated models for matrix input. It is designed to handle large input datasets as they typically occur in single cell RNA-seq experiments.",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "SystemRequirements": "C++11",
      "Suggests": [
        "testthat (>= 2.1.0)",
        "zoo",
        "DESeq2",
        "edgeR",
        "limma",
        "beachmat",
        "MASS",
        "statmod",
        "ggplot2",
        "bench",
        "BiocParallel",
        "knitr",
        "rmarkdown",
        "BiocStyle",
        "TENxPBMCData",
        "muscData",
        "scran",
        "Matrix",
        "dplyr"
      ],
      "LinkingTo": [
        "Rcpp",
        "RcppArmadillo",
        "beachmat"
      ],
      "Imports": [
        "Rcpp",
        "DelayedMatrixStats",
        "matrixStats",
        "MatrixGenerics",
        "DelayedArray",
        "HDF5Array",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "BiocGenerics",
        "methods",
        "stats",
        "utils",
        "splines",
        "rlang",
        "vctrs"
      ],
      "Roxygen": "list(markdown = TRUE)",
      "RoxygenNote": "7.2.3",
      "URL": "https://github.com/const-ae/glmGamPoi",
      "BugReports": "https://github.com/const-ae/glmGamPoi/issues",
      "biocViews": "Regression, RNASeq, Software, SingleCell",
      "VignetteBuilder": "knitr",
      "git_url": "https://git.bioconductor.org/packages/glmGamPoi",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "50d5e6f",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "yes",
      "Author": "Constantin Ahlmann-Eltze [aut, cre] (<https://orcid.org/0000-0002-3762-068X>), Nathan Lubock [ctb] (<https://orcid.org/0000-0001-8064-2465>), Michael Love [ctb]",
      "Maintainer": "Constantin Ahlmann-Eltze <artjom31415@googlemail.com>"
    },
    "globals": {
      "Package": "globals",
      "Version": "0.16.3",
      "Source": "Repository",
      "Depends": [
        "R (>= 3.1.2)"
      ],
      "Imports": [
        "codetools"
      ],
      "Title": "Identify Global Objects in R Expressions",
      "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Davis\",\"Vaughan\", role=\"ctb\", email=\"davis@rstudio.com\"))",
      "Description": "Identifies global (\"unknown\" or \"free\") objects in R expressions by code inspection using various strategies (ordered, liberal, or conservative).  The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in parallel, distributed compute environments.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "ByteCompile": "TRUE",
      "URL": "https://globals.futureverse.org, https://github.com/HenrikBengtsson/globals",
      "BugReports": "https://github.com/HenrikBengtsson/globals/issues",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Henrik Bengtsson [aut, cre, cph], Davis Vaughan [ctb]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Repository": "CRAN"
    },
    "glue": {
      "Package": "glue",
      "Version": "1.8.0",
      "Source": "Repository",
      "Title": "Interpreted String Literals",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation <https://www.python.org/dev/peps/pep-0498/> and Docstrings <https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted String Literals <https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.",
      "License": "MIT + file LICENSE",
      "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue",
      "BugReports": "https://github.com/tidyverse/glue/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "methods"
      ],
      "Suggests": [
        "crayon",
        "DBI (>= 1.2.0)",
        "dplyr",
        "knitr",
        "magrittr",
        "rlang",
        "rmarkdown",
        "RSQLite",
        "testthat (>= 3.2.0)",
        "vctrs (>= 0.3.0)",
        "waldo (>= 0.5.3)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
    },
    "goftest": {
      "Package": "goftest",
      "Version": "1.2-3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Classical Goodness-of-Fit Tests for Univariate Distributions",
      "Date": "2021-10-07",
      "Authors@R": "c(person(\"Julian\", \"Faraway\", role = \"aut\"), person(\"George\", \"Marsaglia\", role = \"aut\"), person(\"John\",   \"Marsaglia\", role = \"aut\"), person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\"))",
      "Depends": [
        "R (>= 3.3)"
      ],
      "Imports": [
        "stats"
      ],
      "Description": "Cramer-Von Mises and Anderson-Darling tests of goodness-of-fit for continuous univariate distributions, using efficient algorithms.",
      "URL": "https://github.com/baddstats/goftest",
      "BugReports": "https://github.com/baddstats/goftest/issues",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Author": "Julian Faraway [aut], George Marsaglia [aut], John Marsaglia [aut], Adrian Baddeley [aut, cre]",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Repository": "CRAN"
    },
    "gplots": {
      "Package": "gplots",
      "Version": "3.2.0",
      "Source": "Repository",
      "Title": "Various R Programming Tools for Plotting Data",
      "Description": "Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions of standard plots ('barplot2', 'boxplot2', 'heatmap.2', 'smartlegend'), - manipulating colors ('col2hex', 'colorpanel', 'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), - calculating and plotting two-dimensional data summaries ('ci2d', 'hist2d'), - enhanced regression diagnostic plots ('lmplot2', 'residplot'), - formula-enabled interface to 'stats::lowess' function ('lowess'), - displaying textual data in plots ('textplot', 'sinkplot'), - plotting dots whose size reflects the relative magnitude of the elements ('balloonplot', 'bubbleplot'), - plotting \"Venn\" diagrams ('venn'), - displaying Open-Office style plots ('ooplot'), - plotting multiple data on same region, with separate axes ('overplot'), - plotting means and confidence intervals ('plotCI', 'plotmeans'), - spacing points in an x-y plot so they don't overlap ('space').",
      "Depends": [
        "R (>= 3.0)"
      ],
      "Imports": [
        "gtools",
        "stats",
        "caTools",
        "KernSmooth",
        "methods"
      ],
      "Suggests": [
        "grid",
        "MASS",
        "knitr",
        "rmarkdown",
        "r2d2",
        "nlme"
      ],
      "LazyData": "yes",
      "VignetteBuilder": "knitr",
      "Date": "2024-10-05",
      "Authors@R": "c( person(\"Gregory R.\", \"Warnes\", , role = \"aut\"), person(\"Ben\", \"Bolker\", , role = \"aut\"), person(\"Lodewijk\", \"Bonebakker\", , role = \"aut\"), person(\"Robert\", \"Gentleman\", role = \"aut\"), person(\"Wolfgang\", \"Huber\", role = \"aut\"), person(\"Andy\", \"Liaw\", role = \"aut\"), person(\"Thomas\", \"Lumley\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\"), person(\"Arni\", \"Magnusson\", role = \"aut\"), person(\"Steffen\", \"Moeller\", role = \"aut\"), person(\"Marc\", \"Schwartz\", role = \"aut\"), person(\"Bill\", \"Venables\", role = \"aut\"), person(\"Tal\", \"Galili\", , \"tal.galili@gmail.com\", c(\"aut\", \"cre\")) )",
      "License": "GPL-2",
      "URL": "https://github.com/talgalili/gplots, https://talgalili.github.io/gplots/",
      "BugReports": "https://github.com/talgalili/gplots/issues",
      "NeedsCompilation": "no",
      "Author": "Gregory R. Warnes [aut], Ben Bolker [aut], Lodewijk Bonebakker [aut], Robert Gentleman [aut], Wolfgang Huber [aut], Andy Liaw [aut], Thomas Lumley [aut], Martin Maechler [aut], Arni Magnusson [aut], Steffen Moeller [aut], Marc Schwartz [aut], Bill Venables [aut], Tal Galili [aut, cre]",
      "Maintainer": "Tal Galili <tal.galili@gmail.com>",
      "Repository": "CRAN"
    },
    "graphlayouts": {
      "Package": "graphlayouts",
      "Version": "1.2.1",
      "Source": "Repository",
      "Title": "Additional Layout Algorithms for Network Visualizations",
      "Authors@R": "person(\"David\", \"Schoch\", email = \"david@schochastics.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-2952-4812\"))",
      "Description": "Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.  Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.  Some more specific algorithms allow the user to emphasize hidden group structures in networks or focus on specific nodes.",
      "URL": "https://github.com/schochastics/graphlayouts, https://schochastics.github.io/graphlayouts/",
      "BugReports": "https://github.com/schochastics/graphlayouts/issues",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "Imports": [
        "igraph (>= 2.0.0)",
        "Rcpp"
      ],
      "Suggests": [
        "testthat",
        "ggplot2",
        "uwot",
        "oaqc"
      ],
      "LinkingTo": [
        "Rcpp",
        "RcppArmadillo"
      ],
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "David Schoch [aut, cre] (<https://orcid.org/0000-0003-2952-4812>)",
      "Maintainer": "David Schoch <david@schochastics.net>",
      "Repository": "CRAN"
    },
    "gridExtra": {
      "Package": "gridExtra",
      "Version": "2.3",
      "Source": "Repository",
      "Authors@R": "c(person(\"Baptiste\", \"Auguie\", email = \"baptiste.auguie@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Anton\", \"Antonov\", email = \"tonytonov@gmail.com\", role = c(\"ctb\")))",
      "License": "GPL (>= 2)",
      "Title": "Miscellaneous Functions for \"Grid\" Graphics",
      "Type": "Package",
      "Description": "Provides a number of user-level functions to work with \"grid\" graphics, notably to arrange multiple grid-based plots on a page, and draw tables.",
      "VignetteBuilder": "knitr",
      "Imports": [
        "gtable",
        "grid",
        "grDevices",
        "graphics",
        "utils"
      ],
      "Suggests": [
        "ggplot2",
        "egg",
        "lattice",
        "knitr",
        "testthat"
      ],
      "RoxygenNote": "6.0.1",
      "NeedsCompilation": "no",
      "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]",
      "Maintainer": "Baptiste Auguie <baptiste.auguie@gmail.com>",
      "Repository": "CRAN"
    },
    "gridtext": {
      "Package": "gridtext",
      "Version": "0.1.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Improved Text Rendering Support for 'Grid' Graphics",
      "Authors@R": "c( person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") ), person( given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"cre\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\", Twitter = \"@bmwiernik\") ) )",
      "Description": "Provides support for rendering of formatted text using 'grid' graphics. Text can be formatted via a minimal subset of 'Markdown', 'HTML', and inline 'CSS' directives, and it can be rendered both with and without word wrap.",
      "URL": "https://wilkelab.org/gridtext/",
      "BugReports": "https://github.com/wilkelab/gridtext/issues",
      "License": "MIT + file LICENSE",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "curl",
        "grid",
        "grDevices",
        "markdown",
        "rlang",
        "Rcpp",
        "png",
        "jpeg",
        "stringr",
        "xml2"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "rmarkdown",
        "testthat",
        "vdiffr"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.1",
      "SystemRequirements": "C++11",
      "NeedsCompilation": "yes",
      "Author": "Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>), Brenton M. Wiernik [aut, cre] (<https://orcid.org/0000-0001-9560-6336>, @bmwiernik)",
      "Maintainer": "Brenton M. Wiernik <brenton@wiernik.org>",
      "Repository": "CRAN"
    },
    "gsl": {
      "Package": "gsl",
      "Version": "2.1-8",
      "Source": "Repository",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Title": "Wrapper for the Gnu Scientific Library",
      "Authors@R": "c(person(given=c(\"Robin\", \"K. S.\"), family=\"Hankin\", role = c(\"aut\",\"cre\"), email=\"hankin.robin@gmail.com\", comment = c(ORCID = \"0000-0001-5982-0415\")), person(given=\"Andrew\",family=\"Clausen\",role=\"ctb\",comment=\"multimin functionality\"), person(given=\"Duncan\",family=\"Murdoch\",role=\"ctb\",comment=\"qrng functions\"))",
      "SystemRequirements": "Gnu Scientific Library version >= 2.5",
      "Description": "An R wrapper for some of the functionality of the Gnu Scientific Library.",
      "Maintainer": "Robin K. S. Hankin <hankin.robin@gmail.com>",
      "License": "GPL-3",
      "URL": "https://github.com/RobinHankin/gsl",
      "BugReports": "https://github.com/RobinHankin/gsl/issues",
      "NeedsCompilation": "yes",
      "Author": "Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>), Andrew Clausen [ctb] (multimin functionality), Duncan Murdoch [ctb] (qrng functions)",
      "Repository": "CRAN"
    },
    "gtable": {
      "Package": "gtable",
      "Version": "0.3.6",
      "Source": "Repository",
      "Title": "Arrange 'Grobs' in Tables",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.",
      "License": "MIT + file LICENSE",
      "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable",
      "BugReports": "https://github.com/r-lib/gtable/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
      "Imports": [
        "cli",
        "glue",
        "grid",
        "lifecycle",
        "rlang (>= 1.1.0)",
        "stats"
      ],
      "Suggests": [
        "covr",
        "ggplot2",
        "knitr",
        "profvis",
        "rmarkdown",
        "testthat (>= 3.0.0)"
      ],
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      "Authors@R": "c(person(\"Gregory R.\", \"Warnes\", role = \"aut\"), person(\"Ben\", \"Bolker\", role = c(\"aut\", \"cre\"), email = \"bolker@mcmaster.ca\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Thomas\", \"Lumley\", role = \"aut\"), person(\"Arni\", \"Magnusson\", role = \"aut\"), person(\"Bill\", \"Venables\", role = \"aut\"), person(\"Genei\", \"Ryodan\", role = \"aut\"), person(\"Steffen\", \"Moeller\", role = \"aut\"), person(\"Ian\", \"Wilson\", role = \"ctb\"), person(\"Mark\", \"Davis\", role = \"ctb\"), person(\"Nitin\", \"Jain\", role=\"ctb\"), person(\"Scott\", \"Chamberlain\", role = \"ctb\"))",
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        "methods",
        "stats",
        "utils"
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      "Language": "en-US",
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      "Description": "Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.",
      "URL": "https://github.com/immunogenomics/harmony",
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      "NeedsCompilation": "yes",
      "Author": "Ilya Korsunsky [cre, aut] (<https://orcid.org/0000-0003-4848-3948>), Martin Hemberg [aut] (<https://orcid.org/0000-0001-8895-5239>), Nikolaos Patikas [aut, ctb] (<https://orcid.org/0000-0002-3978-0134>), Hongcheng Yao [aut, ctb] (<https://orcid.org/0000-0002-0743-4835>), Nghia Millard [aut] (<https://orcid.org/0000-0002-0518-7674>), Jean Fan [aut, ctb] (<https://orcid.org/0000-0002-0212-5451>), Kamil Slowikowski [aut, ctb] (<https://orcid.org/0000-0002-2843-6370>), Miles Smith [ctb], Soumya Raychaudhuri [aut] (<https://orcid.org/0000-0002-1901-8265>)",
      "Maintainer": "Ilya Korsunsky <ilya.korsunsky@gmail.com>",
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      "Title": "Full Featured Implementation of Hash Tables/Associative Arrays/Dictionaries",
      "Date": "2023-08-19",
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        "methods",
        "utils"
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      "License": "GPL (>= 2)",
      "URL": "http://www.johnhughes.org",
      "NeedsCompilation": "no",
      "Author": "Christopher Brown [aut], John Hughes [cre, ctb]",
      "Maintainer": "John Hughes <drjphughesjr@gmail.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
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      "Authors@R": "c( person(\"Holger\", \"Hoefling\", email = \"hhoeflin@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Mario\", \"Annau\", email = \"mario.annau@gmail.com\", role = \"aut\"), person(\"Novartis Institute for BioMedical Research (NIBR)\", role = \"cph\") )",
      "Description": "'HDF5' is a data model, library and file format for storing and managing large amounts of data. This package provides a nearly feature complete, object oriented  wrapper for the 'HDF5' API <https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes. Additionally, functionality is added so that 'HDF5' objects behave very similar to their corresponding R counterparts.",
      "URL": "https://hhoeflin.github.io/hdf5r/, https://github.com/hhoeflin/hdf5r/",
      "BugReports": "https://github.com/hhoeflin/hdf5r/issues",
      "License": "Apache License 2.0 | file LICENSE",
      "Copyright": "For the hdf5r package: Novartis Institute for BioMedical Research Inc. For HDF5: see the HDF5_COPYRIGHTS file.",
      "LazyLoad": "true",
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        "methods"
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        "bit64",
        "utils"
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        "knitr",
        "rmarkdown",
        "nycflights13",
        "reshape2",
        "formatR"
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      "SystemRequirements": "HDF5 (>= 1.8.13)",
      "VignetteBuilder": "knitr",
      "NeedsCompilation": "yes",
      "RoxygenNote": "6.1.1.9000",
      "Collate": "'Common_functions.R' 'Compound.R' 'H5constants.R' 'Helper_functions.R' 'Misc.R' 'R6Classes.R' 'R6Classes_H5A.R' 'R6Classes_H5D.R' 'R6Classes_H5File.R' 'R6Classes_H5Group.R' 'R6Classes_H5P.R' 'R6Classes_H5R.R' 'R6Classes_H5S.R' 'R6Classes_H5T.R' 'adapt_during_onLoad.R' 'convert.R' 'factor_ext.R' 'globalVariables.R' 'h5errorHandling.R' 'h5wrapper.R' 'hdf5r.R' 'high_level_UI.R' 'open_objs.R' 'zzz.R'",
      "Author": "Holger Hoefling [aut, cre], Mario Annau [aut], Novartis Institute for BioMedical Research (NIBR) [cph]",
      "Maintainer": "Holger Hoefling <hhoeflin@gmail.com>",
      "Repository": "CRAN"
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      "Version": "1.0.1",
      "Source": "Repository",
      "Title": "A Simpler Way to Find Your Files",
      "Date": "2020-12-13",
      "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"krlmlr+r@mailbox.org\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\", comment = c(ORCID = \"0000-0002-6983-2759\")))",
      "Description": "Constructs paths to your project's files. Declare the relative path of a file within your project with 'i_am()'. Use the 'here()' function as a drop-in replacement for 'file.path()', it will always locate the files relative to your project root.",
      "License": "MIT + file LICENSE",
      "URL": "https://here.r-lib.org/, https://github.com/r-lib/here",
      "BugReports": "https://github.com/r-lib/here/issues",
      "Imports": [
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      ],
      "Suggests": [
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        "covr",
        "fs",
        "knitr",
        "palmerpenguins",
        "plyr",
        "readr",
        "rlang",
        "rmarkdown",
        "testthat",
        "uuid",
        "withr"
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      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.1.1.9000",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Jennifer Bryan [ctb] (<https://orcid.org/0000-0002-6983-2759>)",
      "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
      "Repository": "CRAN"
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      "Version": "1.28.4",
      "Source": "Repository",
      "Title": "Hexagonal Binning Routines",
      "Authors@R": "c(person(given = \"Dan\", family = \"Carr\", role = \"aut\", email = \"dcarr@voxel.galaxy.gmu.edu\"), person(given = c(\"ported\", \"by\", \"Nicholas\"), family = \"Lewin-Koh\", role = \"aut\"), person(given = \"Martin\", family = \"Maechler\", role = \"aut\", email = \"maechler@stat.math.ethz.ch\"), person(given = c(\"contains\", \"copies\", \"of\", \"lattice\", \"functions\", \"written\", \"by\", \"Deepayan\"), family = \"Sarkar\", role = \"aut\", email = \"deepayan.sarkar@r-project.org\"), person(given = \"Edzer\", family = \"Pebesma\", role = \"cre\", comment = c(ORCID = \"0000-0001-8049-7069\"), email = \"edzer.pebesma@uni-muenster.de\"))",
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      "Suggests": [
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        "affy",
        "Biobase",
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      "Description": "Binning and plotting functions for hexagonal bins.",
      "Collate": "lattice.R BTC.R BTY.R grid.hexagons.R grid.hexlegend.R hbox.R hdiffplot.R hexbinList.R hexbinplot.R hexbin.s4.R hexpanel.R hexplom.R hexPlotMA.R hexutil.R hexViewport.R HO.R LINGRAY.R LOCS.R MAG.R RB.R smoothHexbin.R",
      "License": "GPL-2",
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      "URL": "https://github.com/edzer/hexbin",
      "Author": "Dan Carr [aut], ported by Nicholas Lewin-Koh [aut], Martin Maechler [aut], contains copies of lattice functions written by Deepayan Sarkar [aut], Edzer Pebesma [cre] (<https://orcid.org/0000-0001-8049-7069>)",
      "Maintainer": "Edzer Pebesma <edzer.pebesma@uni-muenster.de>",
      "Repository": "CRAN"
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      "Version": "0.11",
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      "Type": "Package",
      "Title": "Syntax Highlighting for R Source Code",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Yixuan\", \"Qiu\", role = \"aut\"), person(\"Christopher\", \"Gandrud\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\") )",
      "Description": "Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package (<https://gitlab.com/saalen/highlight>).",
      "Depends": [
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      "Imports": [
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      "URL": "https://github.com/yihui/highr",
      "BugReports": "https://github.com/yihui/highr/issues",
      "VignetteBuilder": "knitr",
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      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
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      "Version": "1.1.3",
      "Source": "Repository",
      "Title": "Pretty Time of Day",
      "Date": "2023-03-21",
      "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )",
      "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.",
      "Imports": [
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        "pkgconfig",
        "rlang (>= 1.0.2)",
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        "lubridate",
        "pillar (>= 1.1.0)",
        "testthat (>= 3.0.0)"
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      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms",
      "BugReports": "https://github.com/tidyverse/hms/issues",
      "RoxygenNote": "7.2.3",
      "Config/testthat/edition": "3",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "false",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd], RStudio [fnd]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Type": "Package",
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      "Description": "Tools for HTML generation and output.",
      "License": "GPL (>= 2)",
      "URL": "https://github.com/rstudio/htmltools, https://rstudio.github.io/htmltools/",
      "BugReports": "https://github.com/rstudio/htmltools/issues",
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        "utils"
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      "Enhances": [
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      "Config/Needs/check": "knitr",
      "Config/Needs/website": "rstudio/quillt, bench",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R' 'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R' 'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R' 'template.R'",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Winston Chang [aut] (<https://orcid.org/0000-0002-1576-2126>), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Carson Sievert <carson@posit.co>",
      "Repository": "CRAN"
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    "htmlwidgets": {
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      "Version": "1.6.4",
      "Source": "Repository",
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      "Title": "HTML Widgets for R",
      "Authors@R": "c( person(\"Ramnath\", \"Vaidyanathan\", role = c(\"aut\", \"cph\")), person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Kenton\", \"Russell\", role = c(\"aut\", \"cph\")), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/ramnathv/htmlwidgets",
      "BugReports": "https://github.com/ramnathv/htmlwidgets/issues",
      "Imports": [
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        "yaml"
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      "NeedsCompilation": "no",
      "Author": "Ramnath Vaidyanathan [aut, cph], Yihui Xie [aut], JJ Allaire [aut], Joe Cheng [aut], Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Kenton Russell [aut, cph], Ellis Hughes [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Carson Sievert <carson@posit.co>",
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      "Source": "Repository",
      "Type": "Package",
      "Title": "HTTP and WebSocket Server Library",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", \"fnd\", role = \"cph\"), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )",
      "Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone.  httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)",
      "License": "GPL (>= 2) | file LICENSE",
      "URL": "https://github.com/rstudio/httpuv",
      "BugReports": "https://github.com/rstudio/httpuv/issues",
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        "R (>= 2.15.1)"
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        "promises",
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        "utils"
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      "SystemRequirements": "GNU make, zlib",
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      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC fnd [cph], Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "CRAN"
    },
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      "Package": "httr",
      "Version": "1.4.7",
      "Source": "Repository",
      "Title": "Tools for Working with URLs and HTTP",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).",
      "License": "MIT + file LICENSE",
      "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr",
      "BugReports": "https://github.com/r-lib/httr/issues",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "curl (>= 5.0.2)",
        "jsonlite",
        "mime",
        "openssl (>= 0.8)",
        "R6"
      ],
      "Suggests": [
        "covr",
        "httpuv",
        "jpeg",
        "knitr",
        "png",
        "readr",
        "rmarkdown",
        "testthat (>= 0.8.0)",
        "xml2"
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "httr2": {
      "Package": "httr2",
      "Version": "1.0.6",
      "Source": "Repository",
      "Title": "Perform HTTP Requests and Process the Responses",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )",
      "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.",
      "License": "MIT + file LICENSE",
      "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2",
      "BugReports": "https://github.com/r-lib/httr2/issues",
      "Depends": [
        "R (>= 4.0)"
      ],
      "Imports": [
        "cli (>= 3.0.0)",
        "curl (>= 5.2.2)",
        "glue",
        "lifecycle",
        "magrittr",
        "openssl",
        "R6",
        "rappdirs",
        "rlang (>= 1.1.0)",
        "vctrs (>= 0.6.3)",
        "withr"
      ],
      "Suggests": [
        "askpass",
        "bench",
        "clipr",
        "covr",
        "docopt",
        "httpuv",
        "jose",
        "jsonlite",
        "knitr",
        "later",
        "paws.common",
        "promises",
        "rmarkdown",
        "testthat (>= 3.1.8)",
        "tibble",
        "webfakes",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "resp-stream, req-perform",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "iNEXT": {
      "Package": "iNEXT",
      "Version": "3.0.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Interpolation and Extrapolation for Species Diversity",
      "Author": "T. C. Hsieh, K. H. Ma and Anne Chao",
      "Description": "Provides simple functions to compute and plot two types  (sample-size- and coverage-based) rarefaction and extrapolation curves for species diversity (Hill numbers) based on individual-based abundance data or sampling-unit- based incidence data; see Chao and others (2014, Ecological Monographs) for pertinent theory and methodologies, and Hsieh, Ma and Chao (2016, Methods in Ecology and Evolution) for an introduction of the R package.",
      "License": "GPL (>= 3)",
      "URL": "http://chao.stat.nthu.edu.tw/wordpress/software_download/",
      "Maintainer": "T. C. Hsieh <euler96@gmail.com>",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "stats",
        "graphics",
        "ggplot2",
        "reshape2",
        "Rcpp"
      ],
      "BugReports": "https://github.com/JohnsonHsieh/iNEXT/issues",
      "LazyLoad": "yes",
      "RoxygenNote": "7.2.0",
      "Suggests": [
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        "gridExtra",
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      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "LinkingTo": [
        "Rcpp"
      ],
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "ica": {
      "Package": "ica",
      "Version": "1.0-3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Independent Component Analysis",
      "Date": "2022-07-08",
      "Author": "Nathaniel E. Helwig <helwig@umn.edu>",
      "Maintainer": "Nathaniel E. Helwig <helwig@umn.edu>",
      "Description": "Independent Component Analysis (ICA) using various algorithms: FastICA, Information-Maximization (Infomax), and Joint Approximate Diagonalization of Eigenmatrices (JADE).",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "igraph": {
      "Package": "igraph",
      "Version": "2.1.1",
      "Source": "Repository",
      "Title": "Network Analysis and Visualization",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Maëlle\", \"Salmon\", role = \"ctb\"), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\") )",
      "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.",
      "License": "GPL (>= 2)",
      "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/",
      "BugReports": "https://github.com/igraph/rigraph/issues",
      "Depends": [
        "methods",
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "cli",
        "graphics",
        "grDevices",
        "lifecycle",
        "magrittr",
        "Matrix",
        "pkgconfig (>= 2.0.0)",
        "rlang",
        "stats",
        "utils",
        "vctrs"
      ],
      "Suggests": [
        "ape (>= 5.7-0.1)",
        "callr",
        "decor",
        "digest",
        "igraphdata",
        "knitr",
        "rgl",
        "rmarkdown",
        "scales",
        "stats4",
        "tcltk",
        "testthat",
        "vdiffr",
        "withr"
      ],
      "Enhances": [
        "graph"
      ],
      "LinkingTo": [
        "cpp11 (>= 0.5.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/build": "roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag",
      "Config/Needs/coverage": "covr",
      "Config/Needs/website": "readr",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "vs-es, scan, vs-operators, weakref, watts.strogatz.game",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)",
      "NeedsCompilation": "yes",
      "Author": "Gábor Csárdi [aut] (<https://orcid.org/0000-0001-7098-9676>), Tamás Nepusz [aut] (<https://orcid.org/0000-0002-1451-338X>), Vincent Traag [aut] (<https://orcid.org/0000-0003-3170-3879>), Szabolcs Horvát [aut] (<https://orcid.org/0000-0002-3100-523X>), Fabio Zanini [aut] (<https://orcid.org/0000-0001-7097-8539>), Daniel Noom [aut], Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Maëlle Salmon [ctb], Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
    "irlba": {
      "Package": "irlba",
      "Version": "2.3.5.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices",
      "Date": "2021-12-05",
      "Authors@R": "c( person(\"Jim\", \"Baglama\", role=c(\"aut\", \"cph\"), email=\"jbaglama@uri.edu\"), person(\"Lothar\", \"Reichel\", role=c(\"aut\", \"cph\"), email=\"reichel@math.kent.edu\"), person(\"B. W.\", \"Lewis\", role=c(\"aut\",\"cre\",\"cph\"), email=\"blewis@illposed.net\"))",
      "Description": "Fast and memory efficient methods for truncated singular value decomposition and principal components analysis of large sparse and dense matrices.",
      "Depends": [
        "R (>= 3.6.2)",
        "Matrix"
      ],
      "LinkingTo": [
        "Matrix"
      ],
      "Imports": [
        "stats",
        "methods"
      ],
      "License": "GPL-3",
      "BugReports": "https://github.com/bwlewis/irlba/issues",
      "RoxygenNote": "5.0.1",
      "NeedsCompilation": "yes",
      "Author": "Jim Baglama [aut, cph], Lothar Reichel [aut, cph], B. W. Lewis [aut, cre, cph]",
      "Maintainer": "B. W. Lewis <blewis@illposed.net>",
      "Repository": "CRAN"
    },
    "isoband": {
      "Package": "isoband",
      "Version": "0.2.7",
      "Source": "Repository",
      "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-5147-4711\")) )",
      "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.",
      "License": "MIT + file LICENSE",
      "URL": "https://isoband.r-lib.org",
      "BugReports": "https://github.com/r-lib/isoband/issues",
      "Imports": [
        "grid",
        "utils"
      ],
      "Suggests": [
        "covr",
        "ggplot2",
        "knitr",
        "magick",
        "microbenchmark",
        "rmarkdown",
        "sf",
        "testthat",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "SystemRequirements": "C++11",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Claus O. Wilke [aut] (Original author, <https://orcid.org/0000-0002-7470-9261>), Thomas Lin Pedersen [aut] (<https://orcid.org/0000-0002-5147-4711>)",
      "Maintainer": "Hadley Wickham <hadley@posit.co>",
      "Repository": "CRAN"
    },
    "iterators": {
      "Package": "iterators",
      "Version": "1.0.14",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Provides Iterator Construct",
      "Authors@R": "c(person(\"Folashade\", \"Daniel\", role=\"cre\", email=\"fdaniel@microsoft.com\"), person(\"Revolution\", \"Analytics\", role=c(\"aut\", \"cph\")), person(\"Steve\", \"Weston\", role=\"aut\"))",
      "Description": "Support for iterators, which allow a programmer to traverse through all the elements of a vector, list, or other collection of data.",
      "URL": "https://github.com/RevolutionAnalytics/iterators",
      "Depends": [
        "R (>= 2.5.0)",
        "utils"
      ],
      "Suggests": [
        "RUnit",
        "foreach"
      ],
      "License": "Apache License (== 2.0)",
      "NeedsCompilation": "no",
      "Author": "Folashade Daniel [cre], Revolution Analytics [aut, cph], Steve Weston [aut]",
      "Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
      "Repository": "CRAN"
    },
    "jpeg": {
      "Package": "jpeg",
      "Version": "0.1-10",
      "Source": "Repository",
      "Title": "Read and write JPEG images",
      "Author": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Depends": [
        "R (>= 2.9.0)"
      ],
      "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.",
      "License": "GPL-2 | GPL-3",
      "SystemRequirements": "libjpeg",
      "URL": "https://www.rforge.net/jpeg/",
      "BugReports": "https://github.com/s-u/jpeg/issues",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "jquerylib": {
      "Package": "jquerylib",
      "Version": "0.1.4",
      "Source": "Repository",
      "Title": "Obtain 'jQuery' as an HTML Dependency Object",
      "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )",
      "Description": "Obtain any major version of 'jQuery' (<https://code.jquery.com/>) and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Config/testthat/edition": "3",
      "RoxygenNote": "7.0.2",
      "Imports": [
        "htmltools"
      ],
      "Suggests": [
        "testthat"
      ],
      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)",
      "Maintainer": "Carson Sievert <carson@rstudio.com>",
      "Repository": "CRAN"
    },
    "jsonlite": {
      "Package": "jsonlite",
      "Version": "1.8.9",
      "Source": "Repository",
      "Title": "A Simple and Robust JSON Parser and Generator for R",
      "License": "MIT + file LICENSE",
      "Depends": [
        "methods"
      ],
      "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))",
      "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805",
      "BugReports": "https://github.com/jeroen/jsonlite/issues",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "VignetteBuilder": "knitr, R.rsp",
      "Description": "A reasonably fast JSON parser and generator, optimized for statistical  data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API.  The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains  functions to stream, validate, and prettify JSON data. The unit tests included  with the package verify that all edge cases are encoded and decoded consistently  for use with dynamic data in systems and applications.",
      "Suggests": [
        "httr",
        "vctrs",
        "testthat",
        "knitr",
        "rmarkdown",
        "R.rsp",
        "sf"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)",
      "Repository": "CRAN"
    },
    "knitr": {
      "Package": "knitr",
      "Version": "1.49",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A General-Purpose Package for Dynamic Report Generation in R",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", 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      "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.",
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        "R (>= 3.6.0)"
      ],
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      "License": "GPL",
      "URL": "https://yihui.org/knitr/",
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      "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).",
      "Collate": "'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R' 'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (<https://orcid.org/0000-0002-9101-3362>), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (<https://orcid.org/0000-0003-1413-3974>), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
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    "labeling": {
      "Package": "labeling",
      "Version": "0.4.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Axis Labeling",
      "Date": "2023-08-29",
      "Author": "Justin Talbot,",
      "Maintainer": "Nuno Sempere <nuno.semperelh@gmail.com>",
      "Description": "Functions which provide a range of axis labeling algorithms.",
      "License": "MIT + file LICENSE | Unlimited",
      "Collate": "'labeling.R'",
      "NeedsCompilation": "no",
      "Imports": [
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        "graphics"
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    "lambda.r": {
      "Package": "lambda.r",
      "Version": "1.2.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Modeling Data with Functional Programming",
      "Date": "2019-09-15",
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        "R (>= 3.0.0)"
      ],
      "Imports": [
        "formatR"
      ],
      "Suggests": [
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      "Author": "Brian Lee Yung Rowe",
      "Maintainer": "Brian Lee Yung Rowe <r@zatonovo.com>",
      "Description": "A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.",
      "License": "LGPL-3",
      "LazyLoad": "yes",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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    "later": {
      "Package": "later",
      "Version": "1.3.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops",
      "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"), person(family = \"Posit Software, PBC\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )",
      "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.",
      "URL": "https://r-lib.github.io/later/, https://github.com/r-lib/later",
      "BugReports": "https://github.com/r-lib/later/issues",
      "License": "MIT + file LICENSE",
      "Imports": [
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      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Posit Software, PBC [cph], Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)",
      "Maintainer": "Winston Chang <winston@posit.co>",
      "Repository": "CRAN"
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    "lattice": {
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      "Source": "Repository",
      "Date": "2024-03-20",
      "Priority": "recommended",
      "Title": "Trellis Graphics for R",
      "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )",
      "Description": "A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Suggests": [
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      "Imports": [
        "grid",
        "grDevices",
        "graphics",
        "stats",
        "utils"
      ],
      "Enhances": [
        "chron",
        "zoo"
      ],
      "LazyLoad": "yes",
      "LazyData": "yes",
      "License": "GPL (>= 2)",
      "URL": "https://lattice.r-forge.r-project.org/",
      "BugReports": "https://github.com/deepayan/lattice/issues",
      "NeedsCompilation": "yes",
      "Author": "Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)",
      "Maintainer": "Deepayan Sarkar <deepayan.sarkar@r-project.org>",
      "Repository": "CRAN"
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      "Version": "0.2.2",
      "Source": "Repository",
      "Title": "Lazy (Non-Standard) Evaluation",
      "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )",
      "License": "GPL-3",
      "LazyData": "true",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Suggests": [
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      "VignetteBuilder": "knitr",
      "RoxygenNote": "6.1.1",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre], RStudio [cph]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
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      "Version": "0.4.3.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "R Implementation of Leiden Clustering Algorithm",
      "Date": "2023-11-08",
      "Authors@R": "c(person(\"S. Thomas\", \"Kelly\", email = \"tomkellygenetics@gmail.com\", role = c(\"aut\", \"cre\", \"trl\")), person(\"Vincent A.\", \"Traag\", email = \"v.a.traag@cwts.leidenuniv.nl\", role = c(\"com\")))",
      "Description": "Implements the 'Python leidenalg' module to be called in R. Enables clustering using the leiden algorithm for partition a graph into communities. See the 'Python' repository for more details: <https://github.com/vtraag/leidenalg> Traag et al (2018) From Louvain to Leiden: guaranteeing well-connected communities. <arXiv:1810.08473>.",
      "License": "GPL-3 | file LICENSE",
      "URL": "https://github.com/TomKellyGenetics/leiden",
      "BugReports": "https://github.com/TomKellyGenetics/leiden/issues",
      "Imports": [
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        "reticulate",
        "Matrix",
        "igraph (>= 1.2.7)"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
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        "data.table",
        "devtools",
        "graphsim",
        "knitr",
        "markdown",
        "multiplex",
        "multinet",
        "network",
        "qpdf",
        "RColorBrewer",
        "remotes",
        "rmarkdown",
        "spelling",
        "testthat",
        "tibble"
      ],
      "Language": "en-US",
      "VignetteBuilder": "knitr",
      "Collate": "'find_partition.R' 'leiden.R' 'py_objects.R'",
      "NeedsCompilation": "no",
      "Author": "S. Thomas Kelly [aut, cre, trl], Vincent A. Traag [com]",
      "Maintainer": "S. Thomas Kelly <tomkellygenetics@gmail.com>",
      "Repository": "CRAN"
    },
    "leidenAlg": {
      "Package": "leidenAlg",
      "Version": "1.1.4",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Implements the Leiden Algorithm via an R Interface",
      "Authors@R": "c(person(\"Peter\", \"Kharchenko\", email = \"Peter_Kharchenko@hms.harvard.edu\", role = c(\"aut\")),  person(\"Viktor\", \"Petukhov\", email = \"viktor.s.petukhov@ya.ru\", role = c(\"aut\")),  person(\"Yichen\", \"Wang\", email = \"wayichen@umich.edu\", role=c(\"aut\")), person(\"V.A.\", \"Traag\", email = \"v.a.traag@cwts.leidenuniv.nl\", role = c(\"ctb\")),  person(\"Gábor\", \"Csárdi\", email = \"sardi.gabor@gmail.com\", role = c(\"ctb\")),  person(\"Tamás\", \"Nepusz\", email = \"ntamas@gmail.com\", role = c(\"ctb\")),  person(\"Minh Van\", \"Nguyen\", email = \"nguyenminh2@gmail.com\", role = c(\"ctb\")),  person(\"Evan\", \"Biederstedt\", email = \"evan.biederstedt@gmail.com\", role=c(\"cre\", \"aut\")))",
      "Description": "An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface \"leidenalg\" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. \"From Louvain to Leiden: guaranteeing well-connected communities\". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.",
      "License": "GPL-3",
      "Copyright": "See the file COPYRIGHTS for various leidenAlg copyright details",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "Depends": [
        "R (>= 3.5.0)",
        "Matrix"
      ],
      "Imports": [
        "graphics",
        "grDevices",
        "igraph",
        "methods",
        "parallel",
        "Rcpp (>= 1.0.5)",
        "sccore",
        "stats"
      ],
      "Suggests": [
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        "Rcpp",
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      "SystemRequirements": "GNU make (optional), libxml2 (optional), glpk (>= 4.57, optional)",
      "RoxygenNote": "7.2.3",
      "URL": "https://github.com/kharchenkolab/leidenAlg",
      "BugReports": "https://github.com/kharchenkolab/leidenAlg/issues",
      "NeedsCompilation": "yes",
      "Author": "Peter Kharchenko [aut], Viktor Petukhov [aut], Yichen Wang [aut], V.A. Traag [ctb], Gábor Csárdi [ctb], Tamás Nepusz [ctb], Minh Van Nguyen [ctb], Evan Biederstedt [cre, aut]",
      "Maintainer": "Evan Biederstedt <evan.biederstedt@gmail.com>",
      "Repository": "CRAN"
    },
    "lifecycle": {
      "Package": "lifecycle",
      "Version": "1.0.4",
      "Source": "Repository",
      "Title": "Manage the Life Cycle of your Package Functions",
      "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Manage the life cycle of your exported functions with shared conventions, documentation badges, and user-friendly deprecation warnings.",
      "License": "MIT + file LICENSE",
      "URL": "https://lifecycle.r-lib.org/, https://github.com/r-lib/lifecycle",
      "BugReports": "https://github.com/r-lib/lifecycle/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
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        "cli (>= 3.4.0)",
        "glue",
        "rlang (>= 1.1.0)"
      ],
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        "crayon",
        "knitr",
        "lintr",
        "rmarkdown",
        "testthat (>= 3.0.1)",
        "tibble",
        "tidyverse",
        "tools",
        "vctrs",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate, usethis",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.1",
      "NeedsCompilation": "no",
      "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
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      "Source": "Bioconductor",
      "Date": "2024-09-30",
      "Title": "Linear Models for Microarray and Omics Data",
      "Description": "Data analysis, linear models and differential expression for omics data.",
      "Author": "Gordon Smyth [cre,aut], Yifang Hu [ctb], Matthew Ritchie [ctb], Jeremy Silver [ctb], James Wettenhall [ctb], Davis McCarthy [ctb], Di Wu [ctb], Wei Shi [ctb], Belinda Phipson [ctb], Aaron Lun [ctb], Natalie Thorne [ctb], Alicia Oshlack [ctb], Carolyn de Graaf [ctb], Yunshun Chen [ctb], Goknur Giner [ctb], Mette Langaas [ctb], Egil Ferkingstad [ctb], Marcus Davy [ctb], Francois Pepin [ctb], Dongseok Choi [ctb], Charity Law [ctb], Mengbo Li [ctb]",
      "Maintainer": "Gordon Smyth <smyth@wehi.edu.au>",
      "License": "GPL (>=2)",
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        "R (>= 3.6.0)"
      ],
      "Imports": [
        "grDevices",
        "graphics",
        "stats",
        "utils",
        "methods",
        "statmod"
      ],
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        "BiasedUrn",
        "ellipse",
        "gplots",
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        "locfit",
        "MASS",
        "splines",
        "affy",
        "AnnotationDbi",
        "Biobase",
        "BiocStyle",
        "GO.db",
        "illuminaio",
        "org.Hs.eg.db",
        "vsn"
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      "VignetteBuilder": "knitr",
      "URL": "https://bioinf.wehi.edu.au/limma/",
      "biocViews": "ExonArray, GeneExpression, Transcription, AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneSetEnrichment, DataImport, Bayesian, Clustering, Regression, TimeCourse, Microarray, MicroRNAArray, mRNAMicroarray, OneChannel, ProprietaryPlatforms, TwoChannel, Sequencing, RNASeq, BatchEffect, MultipleComparison, Normalization, Preprocessing, QualityControl, BiomedicalInformatics, CellBiology, Cheminformatics, Epigenetics, FunctionalGenomics, Genetics, ImmunoOncology, Metabolomics, Proteomics, SystemsBiology, Transcriptomics",
      "git_url": "https://git.bioconductor.org/packages/limma",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "0fe58f7",
      "git_last_commit_date": "2024-09-30",
      "Repository": "Bioconductor 3.19",
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      ],
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        "R.utils",
        "R.rsp",
        "markdown"
      ],
      "VignetteBuilder": "R.rsp",
      "Title": "Environments Behaving (Almost) as Lists",
      "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))",
      "Description": "List environments are environments that have list-like properties.  For instance, the elements of a list environment are ordered and can be accessed and iterated over using index subsetting, e.g. 'x <- listenv(a = 1, b = 2); for (i in seq_along(x)) x[[i]] <- x[[i]] ^ 2; y <- as.list(x)'.",
      "License": "LGPL (>= 2.1)",
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      "URL": "https://listenv.futureverse.org, https://github.com/HenrikBengtsson/listenv",
      "BugReports": "https://github.com/HenrikBengtsson/listenv/issues",
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      "Description": "A collection of tests, data sets, and examples for diagnostic checking in linear regression models. Furthermore, some generic tools for inference in parametric models are provided.",
      "LazyData": "yes",
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        "R (>= 3.0.0)",
        "stats",
        "zoo"
      ],
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        "car",
        "strucchange",
        "sandwich",
        "dynlm",
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        "survival",
        "AER"
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      "License": "GPL-2 | GPL-3",
      "NeedsCompilation": "yes",
      "Author": "Torsten Hothorn [aut] (<https://orcid.org/0000-0001-8301-0471>), Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>), Richard W. Farebrother [aut] (pan.f), Clint Cummins [aut] (pan.f), Giovanni Millo [ctb], David Mitchell [ctb]",
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      "Title": "Computes Local False Discovery Rates",
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      "Maintainer": "Balasubramanian Narasimhan <naras@stat.Stanford.EDU>",
      "License": "GPL-2",
      "Imports": [
        "stats",
        "splines",
        "graphics"
      ],
      "Description": "Computation of local false discovery rates.",
      "NeedsCompilation": "no",
      "Author": "Bradley Efron [aut], Brit Turnbull [aut], Balasubramanian Narasimhan [aut, cre], Korbinian Strimmer [ctb]",
      "Repository": "CRAN"
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      "Version": "1.5-9.10",
      "Source": "Repository",
      "Title": "Local Regression, Likelihood and Density Estimation",
      "Date": "2024-06-24",
      "Authors@R": "c(person(\"Catherine\", \"Loader\", role = \"aut\"), person(\"Jiayang\", \"Sun\", role = \"ctb\"), person(\"Lucent Technologies\", role = \"cph\"), person(\"Andy\", \"Liaw\", role = \"cre\",  email=\"andy_liaw@merck.com\"))",
      "Author": "Catherine Loader [aut], Jiayang Sun [ctb], Lucent Technologies [cph], Andy Liaw [cre]",
      "Maintainer": "Andy Liaw <andy_liaw@merck.com>",
      "Description": "Local regression, likelihood and density estimation methods as described in the 1999 book by Loader.",
      "Depends": [
        "R (>= 4.1.0)"
      ],
      "Imports": [
        "lattice"
      ],
      "Suggests": [
        "interp",
        "gam"
      ],
      "License": "GPL (>= 2)",
      "SystemRequirements": "USE_C17",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Version": "2.8.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Advanced Graphics and Image-Processing in R",
      "Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))",
      "Description": "Bindings to 'ImageMagick': the most comprehensive open-source image processing library available. Supports many common formats (png, jpeg, tiff, pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc). All operations are vectorized via the Magick++ STL meaning they operate either on a single frame or a series of frames for working with layers, collages, or animation. In RStudio images are automatically previewed when printed to the console, resulting in an interactive editing environment. The latest  version of the package includes a native graphics device for creating  in-memory graphics or drawing onto images using pixel coordinates.",
      "License": "MIT + file LICENSE",
      "URL": "https://docs.ropensci.org/magick/ https://ropensci.r-universe.dev/magick",
      "BugReports": "https://github.com/ropensci/magick/issues",
      "SystemRequirements": "ImageMagick++: ImageMagick-c++-devel (rpm) or libmagick++-dev (deb)",
      "VignetteBuilder": "knitr",
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        "magrittr",
        "curl"
      ],
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        "Rcpp"
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      "Suggests": [
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        "spelling",
        "jsonlite",
        "methods",
        "knitr",
        "rmarkdown",
        "rsvg",
        "webp",
        "pdftools",
        "ggplot2",
        "gapminder",
        "IRdisplay",
        "tesseract (>= 2.0)",
        "gifski"
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      "Language": "en-US",
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      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "CRAN"
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      "Version": "2.0.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "A Forward-Pipe Operator for R",
      "Authors@R": "c( person(\"Stefan Milton\", \"Bache\", , \"stefan@stefanbache.dk\", role = c(\"aut\", \"cph\"), comment = \"Original author and creator of magrittr\"), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@rstudio.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette.  To quote Rene Magritte, \"Ceci n'est pas un pipe.\"",
      "License": "MIT + file LICENSE",
      "URL": "https://magrittr.tidyverse.org, https://github.com/tidyverse/magrittr",
      "BugReports": "https://github.com/tidyverse/magrittr/issues",
      "Depends": [
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      ],
      "Suggests": [
        "covr",
        "knitr",
        "rlang",
        "rmarkdown",
        "testthat"
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      "VignetteBuilder": "knitr",
      "ByteCompile": "Yes",
      "Config/Needs/website": "tidyverse/tidytemplate",
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      "RoxygenNote": "7.1.2",
      "NeedsCompilation": "yes",
      "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], RStudio [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@rstudio.com>",
      "Repository": "CRAN"
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      "Version": "1.2.11",
      "Source": "Repository",
      "Title": "Map Projections",
      "Date": "2023-01-12",
      "Author": "Doug McIlroy.  Packaged for R by Ray Brownrigg and Thomas P Minka, transition to Plan 9 codebase by Roger Bivand.",
      "Description": "Converts latitude/longitude into projected coordinates.",
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        "R (>= 3.0.0)",
        "maps (>= 2.3-0)"
      ],
      "Imports": [
        "stats",
        "graphics"
      ],
      "License": "Lucent Public License",
      "Maintainer": "Alex Deckmyn <alex.deckmyn@meteo.be>",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Version": "3.4.2.1",
      "Source": "Repository",
      "Title": "Draw Geographical Maps",
      "Date": "2023-12-14",
      "Author": "Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg. Enhancements by Thomas P Minka and Alex Deckmyn.",
      "Description": "Display of maps.  Projection code and larger maps are in separate packages ('mapproj' and 'mapdata').",
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        "utils"
      ],
      "LazyData": "yes",
      "Suggests": [
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        "mapdata (>= 2.3.0)",
        "sp",
        "rnaturalearth"
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      "License": "GPL-2",
      "Maintainer": "Alex Deckmyn <alex.deckmyn@meteo.be>",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Jeffrey\", \"Horner\", role = \"aut\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Adam\", \"November\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Andrzej\", \"Oles\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Render Markdown to full and lightweight HTML/LaTeX documents with the 'commonmark' package. This package has been superseded by 'litedown'.",
      "Depends": [
        "R (>= 2.11.1)"
      ],
      "Imports": [
        "utils",
        "commonmark (>= 1.9.0)",
        "xfun (>= 0.38)"
      ],
      "Suggests": [
        "knitr",
        "rmarkdown (>= 2.18)",
        "yaml",
        "RCurl"
      ],
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/rstudio/markdown",
      "BugReports": "https://github.com/rstudio/markdown/issues",
      "RoxygenNote": "7.3.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), JJ Allaire [aut], Jeffrey Horner [aut], Henrik Bengtsson [ctb], Jim Hester [ctb], Yixuan Qiu [ctb], Kohske Takahashi [ctb], Adam November [ctb], Nacho Caballero [ctb], Jeroen Ooms [ctb], Thomas Leeper [ctb], Joe Cheng [ctb], Andrzej Oles [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
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      "Version": "1.6-0",
      "Source": "Repository",
      "Date": "2022-02-28",
      "Title": "Using 'Mathjax' in Rd Files",
      "Authors@R": "person(given = \"Wolfgang\", family = \"Viechtbauer\", role = c(\"aut\",\"cre\"), email = \"wvb@wvbauer.com\", comment = c(ORCID = \"0000-0003-3463-4063\"))",
      "Description": "Provides 'MathJax' and macros to enable its use within Rd files for rendering equations in the HTML help files.",
      "License": "GPL-3",
      "Encoding": "UTF-8",
      "URL": "https://github.com/wviechtb/mathjaxr",
      "BugReports": "https://github.com/wviechtb/mathjaxr/issues",
      "Suggests": [
        "js"
      ],
      "NeedsCompilation": "yes",
      "Author": "Wolfgang Viechtbauer [aut, cre] (<https://orcid.org/0000-0003-3463-4063>)",
      "Maintainer": "Wolfgang Viechtbauer <wvb@wvbauer.com>",
      "Repository": "CRAN"
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      "Version": "1.0.4.1",
      "Source": "Repository",
      "Date": "2022-05-31",
      "Title": "'MATLAB' Emulation Package",
      "Author": "P. Roebuck",
      "Maintainer": "P. Roebuck <proebuck1701@gmail.com>",
      "Description": "Emulate 'MATLAB' code using 'R'.",
      "Depends": [
        "R (>= 2.15)"
      ],
      "Imports": [
        "methods"
      ],
      "URL": "https://cran.r-project.org/package=matlab",
      "License": "Artistic-2.0",
      "Copyright": "file COPYRIGHTS",
      "LazyLoad": "true",
      "NeedsCompilation": "no",
      "Repository": "CRAN",
      "Repository/R-Forge/Project": "estimate",
      "Repository/R-Forge/Revision": "43",
      "Repository/R-Forge/DateTimeStamp": "2022-05-31 23:32:38"
    },
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      ],
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        "base64enc",
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        "knitr",
        "markdown",
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        "R.devices",
        "R.rsp"
      ],
      "VignetteBuilder": "R.rsp",
      "Title": "Functions that Apply to Rows and Columns of Matrices (and to Vectors)",
      "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Constantin\", \"Ahlmann-Eltze\", role = \"ctb\"), person(\"Hector\", \"Corrada Bravo\", role=\"ctb\"), person(\"Robert\", \"Gentleman\", role=\"ctb\"), person(\"Jan\", \"Gleixner\", role=\"ctb\"), person(\"Peter\", \"Hickey\", role=\"ctb\"), person(\"Ola\", \"Hossjer\", role=\"ctb\"), person(\"Harris\", \"Jaffee\", role=\"ctb\"), person(\"Dongcan\", \"Jiang\", role=\"ctb\"), person(\"Peter\", \"Langfelder\", role=\"ctb\"), person(\"Brian\", \"Montgomery\", role=\"ctb\"), person(\"Angelina\", \"Panagopoulou\", role=\"ctb\"), person(\"Hugh\", \"Parsonage\", role=\"ctb\"), person(\"Jakob Peder\", \"Pettersen\", role=\"ctb\"))",
      "Author": "Henrik Bengtsson [aut, cre, cph], Constantin Ahlmann-Eltze [ctb], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Jan Gleixner [ctb], Peter Hickey [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb], Brian Montgomery [ctb], Angelina Panagopoulou [ctb], Hugh Parsonage [ctb], Jakob Peder Pettersen [ctb]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Description": "High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds().  Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.  There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().",
      "License": "Artistic-2.0",
      "LazyLoad": "TRUE",
      "NeedsCompilation": "yes",
      "ByteCompile": "TRUE",
      "URL": "https://github.com/HenrikBengtsson/matrixStats",
      "BugReports": "https://github.com/HenrikBengtsson/matrixStats/issues",
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      "Version": "6.1.1",
      "Source": "Repository",
      "Date": "2024-04-29",
      "Title": "Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation",
      "Description": "Gaussian finite mixture models fitted via EM algorithm for model-based clustering, classification, and density estimation,  including Bayesian regularization, dimension reduction for  visualisation, and resampling-based inference.",
      "Authors@R": "c(person(\"Chris\", \"Fraley\", role = \"aut\"), person(\"Adrian E.\", \"Raftery\", role = \"aut\", comment = c(ORCID = \"0000-0002-6589-301X\")), person(\"Luca\", \"Scrucca\", role = c(\"aut\", \"cre\"), email = \"luca.scrucca@unipg.it\", comment = c(ORCID = \"0000-0003-3826-0484\")), person(\"Thomas Brendan\", \"Murphy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5668-7046\")), person(\"Michael\", \"Fop\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3936-2757\")))",
      "Depends": [
        "R (>= 3.0)"
      ],
      "Imports": [
        "stats",
        "utils",
        "graphics",
        "grDevices"
      ],
      "Suggests": [
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        "rmarkdown (>= 2.10)",
        "mix (>= 1.0)",
        "geometry (>= 0.4)",
        "MASS"
      ],
      "License": "GPL (>= 2)",
      "URL": "https://mclust-org.github.io/mclust/",
      "VignetteBuilder": "knitr",
      "Repository": "CRAN",
      "ByteCompile": "true",
      "NeedsCompilation": "yes",
      "LazyData": "yes",
      "Encoding": "UTF-8",
      "Author": "Chris Fraley [aut], Adrian E. Raftery [aut] (<https://orcid.org/0000-0002-6589-301X>), Luca Scrucca [aut, cre] (<https://orcid.org/0000-0003-3826-0484>), Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>), Michael Fop [ctb] (<https://orcid.org/0000-0003-3936-2757>)",
      "Maintainer": "Luca Scrucca <luca.scrucca@unipg.it>"
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      "Source": "Repository",
      "Title": "'Memoisation' of Functions",
      "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Jim\", family = \"Hester\", role = \"aut\"), person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"), person(given = \"Kirill\", family = \"Müller\", role = \"aut\", email = \"krlmlr+r@mailbox.org\"), person(given = \"Daniel\", family = \"Cook\", role = \"aut\", email = \"danielecook@gmail.com\"), person(given = \"Mark\", family = \"Edmondson\", role = \"ctb\", email = \"r@sunholo.com\"))",
      "Description": "Cache the results of a function so that when you call it again with the same arguments it returns the previously computed value.",
      "License": "MIT + file LICENSE",
      "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise",
      "BugReports": "https://github.com/r-lib/memoise/issues",
      "Imports": [
        "rlang (>= 0.4.10)",
        "cachem"
      ],
      "Suggests": [
        "digest",
        "aws.s3",
        "covr",
        "googleAuthR",
        "googleCloudStorageR",
        "httr",
        "testthat"
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      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.2",
      "NeedsCompilation": "no",
      "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut, cre], Kirill Müller [aut], Daniel Cook [aut], Mark Edmondson [ctb]",
      "Maintainer": "Winston Chang <winston@rstudio.com>",
      "Repository": "CRAN"
    },
    "metadat": {
      "Package": "metadat",
      "Version": "1.4-0",
      "Source": "Repository",
      "Date": "2025-02-04",
      "Title": "Meta-Analysis Datasets",
      "Authors@R": "c( person(given = \"Wolfgang\", family = \"Viechtbauer\", role = c(\"aut\",\"cre\"), email = \"wvb@metafor-project.org\", comment = c(ORCID = \"0000-0003-3463-4063\")), person(given = \"Thomas\", family=\"White\", role=\"aut\", email = \"thomas.white@sydney.edu.au\", comment = c(ORCID = \"0000-0002-3976-1734\")), person(given = \"Daniel\", family=\"Noble\", role=\"aut\", email = \"daniel.noble@anu.edu.au\", comment = c(ORCID = \"0000-0001-9460-8743\")), person(given = \"Alistair\", family=\"Senior\", role=\"aut\", email = \"alistair.senior@sydney.edu.au\", comment = c(ORCID = \"0000-0001-9805-7280\")), person(given = \"W. Kyle\", family=\"Hamilton\", role=\"aut\", email = \"whamilton@ucmerced.edu\", comment = c(ORCID = \"0000-0002-8642-7990\")), person(given = \"Guido\", family = \"Schwarzer\", role = \"dtc\", email = \"guido.schwarzer@uniklinik-freiburg.de\", comment = c(ORCID = \"0000-0001-6214-9087\")))",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Imports": [
        "utils",
        "tools",
        "mathjaxr"
      ],
      "Suggests": [
        "metafor",
        "numDeriv",
        "BiasedUrn",
        "dfoptim",
        "igraph",
        "ape",
        "testthat",
        "digest",
        "lme4",
        "clubSandwich",
        "meta",
        "netmeta",
        "mvtnorm",
        "gridExtra",
        "rms",
        "bayesmeta",
        "ellipse"
      ],
      "Description": "A collection of meta-analysis datasets for teaching purposes, illustrating/testing meta-analytic methods, and validating published analyses.",
      "License": "GPL (>= 2)",
      "ByteCompile": "TRUE",
      "LazyData": "TRUE",
      "Encoding": "UTF-8",
      "RdMacros": "mathjaxr",
      "BuildManual": "TRUE",
      "URL": "https://github.com/wviechtb/metadat, https://wviechtb.github.io/metadat/",
      "BugReports": "https://github.com/wviechtb/metadat/issues",
      "NeedsCompilation": "no",
      "Author": "Wolfgang Viechtbauer [aut, cre] (<https://orcid.org/0000-0003-3463-4063>), Thomas White [aut] (<https://orcid.org/0000-0002-3976-1734>), Daniel Noble [aut] (<https://orcid.org/0000-0001-9460-8743>), Alistair Senior [aut] (<https://orcid.org/0000-0001-9805-7280>), W. Kyle Hamilton [aut] (<https://orcid.org/0000-0002-8642-7990>), Guido Schwarzer [dtc] (<https://orcid.org/0000-0001-6214-9087>)",
      "Maintainer": "Wolfgang Viechtbauer <wvb@metafor-project.org>",
      "Repository": "CRAN"
    },
    "metafor": {
      "Package": "metafor",
      "Version": "4.8-0",
      "Source": "Repository",
      "Date": "2025-01-28",
      "Title": "Meta-Analysis Package for R",
      "Authors@R": "person(given = \"Wolfgang\", family = \"Viechtbauer\", role = c(\"aut\",\"cre\"), email = \"wvb@metafor-project.org\", comment = c(ORCID = \"0000-0003-3463-4063\"))",
      "Depends": [
        "R (>= 4.0.0)",
        "methods",
        "Matrix",
        "metadat",
        "numDeriv"
      ],
      "Imports": [
        "stats",
        "utils",
        "graphics",
        "grDevices",
        "nlme",
        "mathjaxr",
        "pbapply",
        "digest"
      ],
      "Suggests": [
        "lme4",
        "pracma",
        "minqa",
        "nloptr",
        "dfoptim",
        "ucminf",
        "lbfgsb3c",
        "subplex",
        "BB",
        "Rsolnp",
        "alabama",
        "optimParallel",
        "optimx",
        "CompQuadForm",
        "mvtnorm",
        "BiasedUrn",
        "Epi",
        "survival",
        "GLMMadaptive",
        "glmmTMB",
        "car",
        "multcomp",
        "gsl",
        "sp",
        "ape",
        "boot",
        "clubSandwich",
        "crayon",
        "R.rsp",
        "testthat",
        "rmarkdown",
        "wildmeta",
        "emmeans",
        "estmeansd",
        "metaBLUE",
        "rstudioapi",
        "glmulti",
        "MuMIn",
        "mice",
        "Amelia",
        "calculus"
      ],
      "Description": "A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit equal-, fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat, bubble, and GOSH plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted. An introduction to the package can be found in Viechtbauer (2010) <doi:10.18637/jss.v036.i03>.",
      "License": "GPL (>= 2)",
      "ByteCompile": "TRUE",
      "Encoding": "UTF-8",
      "RdMacros": "mathjaxr",
      "VignetteBuilder": "R.rsp",
      "BuildManual": "TRUE",
      "URL": "https://www.metafor-project.org https://github.com/wviechtb/metafor https://wviechtb.github.io/metafor/ https://www.wvbauer.com",
      "BugReports": "https://github.com/wviechtb/metafor/issues",
      "NeedsCompilation": "no",
      "Author": "Wolfgang Viechtbauer [aut, cre] (<https://orcid.org/0000-0003-3463-4063>)",
      "Maintainer": "Wolfgang Viechtbauer <wvb@metafor-project.org>",
      "Repository": "CRAN"
    },
    "metap": {
      "Package": "metap",
      "Version": "1.11",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Meta-Analysis of Significance Values",
      "Date": "2024-07-10",
      "Authors@R": "person(\"Michael\", \"Dewey\", role = c(\"aut\", \"cre\"), email = \"lists@dewey.myzen.co.uk\", comment = c(ORCID = \"0000-0002-7522-3677\") )",
      "Description": "The canonical way to perform meta-analysis involves using effect sizes. When they are not available this package provides a number of methods for meta-analysis of significance values including the methods of Edgington, Fisher, Lancaster, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published results; and routines for graphical display.",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "lattice",
        "Rdpack (>= 0.7)",
        "TFisher",
        "mutoss",
        "mathjaxr (>= 0.8-3)",
        "qqconf"
      ],
      "RdMacros": "Rdpack,mathjaxr",
      "BuildManual": "TRUE",
      "License": "GPL-2",
      "LazyLoad": "yes",
      "NeedsCompilation": "no",
      "Author": "Michael Dewey [aut, cre] (<https://orcid.org/0000-0002-7522-3677>)",
      "Maintainer": "Michael Dewey <lists@dewey.myzen.co.uk>",
      "Repository": "CRAN"
    },
    "metapod": {
      "Package": "metapod",
      "Version": "1.12.0",
      "Source": "Bioconductor",
      "Date": "2023-12-22",
      "Title": "Meta-Analyses on P-Values of Differential Analyses",
      "Authors@R": "person(\"Aaron\", \"Lun\", role=c(\"aut\", \"cre\"), email = \"infinite.monkeys.with.keyboards@gmail.com\")",
      "Imports": [
        "Rcpp"
      ],
      "Suggests": [
        "testthat",
        "knitr",
        "BiocStyle",
        "rmarkdown"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "biocViews": "MultipleComparison, DifferentialPeakCalling",
      "Description": "Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.",
      "License": "GPL-3",
      "NeedsCompilation": "yes",
      "SystemRequirements": "C++11",
      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.1.1",
      "git_url": "https://git.bioconductor.org/packages/metapod",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "4f07cb9",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "Author": "Aaron Lun [aut, cre]",
      "Maintainer": "Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>"
    },
    "mgcv": {
      "Package": "mgcv",
      "Version": "1.9-1",
      "Source": "Repository",
      "Author": "Simon Wood <simon.wood@r-project.org>",
      "Maintainer": "Simon Wood <simon.wood@r-project.org>",
      "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation",
      "Description": "Generalized additive (mixed) models, some of their extensions and  other generalized ridge regression with multiple smoothing  parameter estimation by (Restricted) Marginal Likelihood,  Generalized Cross Validation and similar, or using iterated  nested Laplace approximation for fully Bayesian inference. See  Wood (2017) <doi:10.1201/9781315370279> for an overview.  Includes a gam() function, a wide variety of smoothers, 'JAGS'  support and distributions beyond the exponential family.",
      "Priority": "recommended",
      "Depends": [
        "R (>= 3.6.0)",
        "nlme (>= 3.1-64)"
      ],
      "Imports": [
        "methods",
        "stats",
        "graphics",
        "Matrix",
        "splines",
        "utils"
      ],
      "Suggests": [
        "parallel",
        "survival",
        "MASS"
      ],
      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "mime": {
      "Package": "mime",
      "Version": "0.12",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Map Filenames to MIME Types",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )",
      "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.",
      "Imports": [
        "tools"
      ],
      "License": "GPL",
      "URL": "https://github.com/yihui/mime",
      "BugReports": "https://github.com/yihui/mime/issues",
      "RoxygenNote": "7.1.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Jeffrey Horner [ctb], Beilei Bian [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
    "miniUI": {
      "Package": "miniUI",
      "Version": "0.1.1.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Shiny UI Widgets for Small Screens",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", role = c(\"cre\", \"aut\"), email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\") )",
      "Description": "Provides UI widget and layout functions for writing Shiny apps that work well on small screens.",
      "License": "GPL-3",
      "LazyData": "TRUE",
      "Imports": [
        "shiny (>= 0.13)",
        "htmltools (>= 0.3)",
        "utils"
      ],
      "RoxygenNote": "5.0.1",
      "NeedsCompilation": "no",
      "Author": "Joe Cheng [cre, aut], RStudio [cph]",
      "Maintainer": "Joe Cheng <joe@rstudio.com>",
      "Repository": "CRAN"
    },
    "mnormt": {
      "Package": "mnormt",
      "Version": "2.1.1",
      "Source": "Repository",
      "Date": "2022-09-26",
      "Title": "The Multivariate Normal and t Distributions, and Their Truncated Versions",
      "Author": "Adelchi Azzalini [aut, cre], Alan Genz [aut] (most Fortran code), Alan Miller [ctb] (Fortran routine PHI), Michael J. Wichura  [ctb] (Fortran routine PHINV), G. W. Hill [ctb] (Fortran routine STDINV), Yihong Ge [ctb] (Fortran routines BNVU and MVBVU).",
      "Maintainer": "Adelchi Azzalini <adelchi.azzalini@unipd.it>",
      "Depends": [
        "R (>= 2.2.0)"
      ],
      "Description": "Functions are provided for computing the density and the distribution function of d-dimensional normal and \"t\" random variables, possibly truncated (on one side or two sides),  and for generating random  vectors sampled from these distributions, except sampling from the truncated \"t\". Moments of arbitrary order of a multivariate truncated normal are computed, and converted to cumulants up to order 4.  Probabilities are computed via non-Monte Carlo methods; different routines  are used in the case d=1, d=2, d=3, d>3, if d denotes the dimensionality.",
      "License": "GPL-2 | GPL-3",
      "URL": "http://azzalini.stat.unipd.it/SW/Pkg-mnormt/",
      "NeedsCompilation": "yes",
      "Encoding": "UTF-8",
      "Repository": "CRAN"
    },
    "multcomp": {
      "Package": "multcomp",
      "Version": "1.4-26",
      "Source": "Repository",
      "Title": "Simultaneous Inference in General Parametric Models",
      "Date": "2024-07-18",
      "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"),  email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")),  person(\"Frank\", \"Bretz\", role = \"aut\"),  person(\"Peter\", \"Westfall\", role = \"aut\"), person(\"Richard M.\", \"Heiberger\", role = \"ctb\"), person(\"Andre\", \"Schuetzenmeister\", role = \"ctb\"), person(\"Susan\", \"Scheibe\", role = \"ctb\"))",
      "Description": "Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including  linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book \"Multiple Comparisons Using R\" (Bretz, Hothorn,  Westfall, 2010, CRC Press).",
      "Depends": [
        "stats",
        "graphics",
        "mvtnorm (>= 1.0-10)",
        "survival (>= 2.39-4)",
        "TH.data (>= 1.0-2)"
      ],
      "Imports": [
        "sandwich (>= 2.3-0)",
        "codetools"
      ],
      "Suggests": [
        "lme4 (>= 0.999375-16)",
        "nlme",
        "robustbase",
        "coin",
        "MASS",
        "foreign",
        "xtable",
        "lmtest",
        "coxme (>= 2.2-1)",
        "SimComp",
        "ISwR",
        "tram (>= 0.2-5)",
        "fixest (>= 0.10)",
        "glmmTMB"
      ],
      "URL": "http://multcomp.R-forge.R-project.org, https://www.routledge.com/Multiple-Comparisons-Using-R/Bretz-Hothorn-Westfall/p/book/9781584885740",
      "LazyData": "yes",
      "License": "GPL-2",
      "NeedsCompilation": "no",
      "Author": "Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>), Frank Bretz [aut], Peter Westfall [aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb], Susan Scheibe [ctb]",
      "Maintainer": "Torsten Hothorn <Torsten.Hothorn@R-project.org>",
      "Repository": "CRAN"
    },
    "multtest": {
      "Package": "multtest",
      "Version": "2.60.0",
      "Source": "Bioconductor",
      "Title": "Resampling-based multiple hypothesis testing",
      "Author": "Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra Taylor, Sandrine Dudoit",
      "Description": "Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR).  Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included.  When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function.  Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.",
      "Maintainer": "Katherine S. Pollard <katherine.pollard@gladstone.ucsf.edu>",
      "Depends": [
        "R (>= 2.10)",
        "methods",
        "BiocGenerics",
        "Biobase"
      ],
      "Imports": [
        "survival",
        "MASS",
        "stats4"
      ],
      "Suggests": [
        "snow"
      ],
      "License": "LGPL",
      "LazyLoad": "yes",
      "biocViews": "Microarray, DifferentialExpression, MultipleComparison",
      "git_url": "https://git.bioconductor.org/packages/multtest",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "bc08e7c",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "yes"
    },
    "munsell": {
      "Package": "munsell",
      "Version": "0.5.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Utilities for Using Munsell Colours",
      "Author": "Charlotte Wickham <cwickham@gmail.com>",
      "Maintainer": "Charlotte Wickham <cwickham@gmail.com>",
      "Description": "Provides easy access to, and manipulation of, the Munsell  colours. Provides a mapping between Munsell's  original notation (e.g. \"5R 5/10\") and hexadecimal strings suitable  for use directly in R graphics. Also provides utilities  to explore slices through the Munsell colour tree, to transform  Munsell colours and display colour palettes.",
      "Suggests": [
        "ggplot2",
        "testthat"
      ],
      "Imports": [
        "colorspace",
        "methods"
      ],
      "License": "MIT + file LICENSE",
      "URL": "https://cran.r-project.org/package=munsell, https://github.com/cwickham/munsell/",
      "RoxygenNote": "7.3.1",
      "Encoding": "UTF-8",
      "BugReports": "https://github.com/cwickham/munsell/issues",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "mutoss": {
      "Package": "mutoss",
      "Version": "0.1-13",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Unified Multiple Testing Procedures",
      "Author": "MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer,  Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft",
      "Maintainer": "Kornelius Rohmeyer <rohmeyer@small-projects.de>",
      "Description": "Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are  standardized and usable by the accompanying 'mutossGUI'.",
      "Depends": [
        "R (>= 2.10.0)",
        "mvtnorm"
      ],
      "Suggests": [
        "fdrtool",
        "qvalue",
        "testthat",
        "lattice"
      ],
      "Imports": [
        "plotrix",
        "multtest (>= 2.2.0)",
        "multcomp (>= 1.1-0)",
        "methods"
      ],
      "License": "GPL",
      "LazyLoad": "yes",
      "LazyData": "true",
      "URL": "https://github.com/kornl/mutoss/",
      "BugReports": "https://github.com/kornl/mutoss/issues/",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "mvtnorm": {
      "Package": "mvtnorm",
      "Version": "1.3-2",
      "Source": "Repository",
      "Title": "Multivariate Normal and t Distributions",
      "Date": "2024-11-04",
      "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))",
      "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates,  and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae  parameterised by Cholesky factors of covariance or precision matrices are implemented  for interval-censored and exact data, or a mix thereof. Score functions for these  log-likelihoods are available. A class representing multiple lower triangular matrices  and corresponding methods are part of this package.",
      "Imports": [
        "stats"
      ],
      "Depends": [
        "R(>= 3.5.0)"
      ],
      "Suggests": [
        "qrng",
        "numDeriv"
      ],
      "License": "GPL-2",
      "URL": "http://mvtnorm.R-forge.R-project.org",
      "NeedsCompilation": "yes",
      "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (<https://orcid.org/0000-0002-6294-8185>), Martin Maechler [ctb] (<https://orcid.org/0000-0002-8685-9910>), Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)",
      "Maintainer": "Torsten Hothorn <Torsten.Hothorn@R-project.org>",
      "Repository": "CRAN"
    },
    "nlme": {
      "Package": "nlme",
      "Version": "3.1-166",
      "Source": "Repository",
      "Date": "2024-08-13",
      "Priority": "recommended",
      "Title": "Linear and Nonlinear Mixed Effects Models",
      "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\")))",
      "Contact": "see 'MailingList'",
      "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "graphics",
        "stats",
        "utils",
        "lattice"
      ],
      "Suggests": [
        "MASS",
        "SASmixed"
      ],
      "LazyData": "yes",
      "Encoding": "UTF-8",
      "License": "GPL (>= 2)",
      "BugReports": "https://bugs.r-project.org",
      "MailingList": "R-help@r-project.org",
      "URL": "https://svn.r-project.org/R-packages/trunk/nlme/",
      "NeedsCompilation": "yes",
      "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre]",
      "Maintainer": "R Core Team <R-core@R-project.org>",
      "Repository": "CRAN"
    },
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      "Package": "numDeriv",
      "Version": "2016.8-1.1",
      "Source": "Repository",
      "Title": "Accurate Numerical Derivatives",
      "Description": "Methods for calculating (usually) accurate numerical first and second order derivatives. Accurate calculations  are done using 'Richardson''s' extrapolation or, when applicable, a complex step derivative is available. A simple difference  method is also provided. Simple difference is (usually) less accurate but is much quicker than 'Richardson''s' extrapolation and provides a  useful cross-check.  Methods are provided for real scalar and vector valued functions.",
      "Depends": [
        "R (>= 2.11.1)"
      ],
      "LazyLoad": "yes",
      "ByteCompile": "yes",
      "License": "GPL-2",
      "Copyright": "2006-2011, Bank of Canada. 2012-2016, Paul Gilbert",
      "Author": "Paul Gilbert and Ravi Varadhan",
      "Maintainer": "Paul Gilbert <pgilbert.ttv9z@ncf.ca>",
      "URL": "http://optimizer.r-forge.r-project.org/",
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      "Repository": "CRAN"
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      "Version": "2.2.2",
      "Source": "Repository",
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      "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL",
      "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Oliver\", \"Keyes\", role = \"ctb\"))",
      "Description": "Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates.  AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions  combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto  calculations on large multibyte integers.",
      "License": "MIT + file LICENSE",
      "URL": "https://jeroen.r-universe.dev/openssl",
      "BugReports": "https://github.com/jeroen/openssl/issues",
      "SystemRequirements": "OpenSSL >= 1.0.2",
      "VignetteBuilder": "knitr",
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        "askpass"
      ],
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        "curl",
        "testthat (>= 2.1.0)",
        "digest",
        "knitr",
        "rmarkdown",
        "jsonlite",
        "jose",
        "sodium"
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      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Oliver Keyes [ctb]",
      "Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
      "Repository": "CRAN"
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      "Version": "4.2.7.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Read, Write and Edit xlsx Files",
      "Date": "2024-09-19",
      "Authors@R": "c(person(given = \"Philipp\", family = \"Schauberger\", role = \"aut\", email = \"philipp@schauberger.co.at\"), person(given = \"Alexander\", family = \"Walker\", role = \"aut\", email = \"Alexander.Walker1989@gmail.com\"), person(given = \"Luca\", family = \"Braglia\", role = \"ctb\"), person(given = \"Joshua\", family = \"Sturm\", role = \"ctb\"), person(given = \"Jan Marvin\", family = \"Garbuszus\", role = c(\"ctb\", \"cre\"), email = \"jan.garbuszus@ruhr-uni-bochum.de\"), person(given = \"Jordan Mark\", family = \"Barbone\", role = \"ctb\", email = \"jmbarbone@gmail.com\", comment = c(ORCID = \"0000-0001-9788-3628\")), person(given = \"David\", family = \"Zimmermann\", role = \"ctb\", email = \"david_j_zimmermann@hotmail.com\"), person(given = \"Reinhold\", family = \"Kainhofer\", role = \"ctb\", email = \"reinhold@kainhofer.com\"))",
      "Description": "Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, styling and editing worksheets. Through the use of 'Rcpp', read/write times are comparable to the 'xlsx' and 'XLConnect' packages with the added benefit of removing the dependency on Java.",
      "License": "MIT + file LICENSE",
      "URL": "https://ycphs.github.io/openxlsx/index.html, https://github.com/ycphs/openxlsx",
      "BugReports": "https://github.com/ycphs/openxlsx/issues",
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "grDevices",
        "methods",
        "Rcpp",
        "stats",
        "stringi",
        "utils",
        "zip"
      ],
      "Suggests": [
        "curl",
        "formula.tools",
        "knitr",
        "rmarkdown",
        "testthat"
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      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "Language": "en-US",
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      "Collate": "'CommentClass.R' 'HyperlinkClass.R' 'RcppExports.R' 'class_definitions.R' 'StyleClass.R' 'WorkbookClass.R' 'asserts.R' 'baseXML.R' 'borderFunctions.R' 'build_workbook.R' 'chartsheet_class.R' 'conditional_formatting.R' 'data-fontSizeLookupTables.R' 'helperFunctions.R' 'loadWorkbook.R' 'onUnload.R' 'openXL.R' 'openxlsx-package.R' 'openxlsx.R' 'openxlsxCoerce.R' 'readWorkbook.R' 'setWindowSize.R' 'sheet_data_class.R' 'utils.R' 'workbook_column_widths.R' 'workbook_read_workbook.R' 'workbook_write_data.R' 'worksheet_class.R' 'wrappers.R' 'writeData.R' 'writeDataTable.R' 'writexlsx.R' 'zzz.R'",
      "LazyData": "true",
      "NeedsCompilation": "yes",
      "Author": "Philipp Schauberger [aut], Alexander Walker [aut], Luca Braglia [ctb], Joshua Sturm [ctb], Jan Marvin Garbuszus [ctb, cre], Jordan Mark Barbone [ctb] (<https://orcid.org/0000-0001-9788-3628>), David Zimmermann [ctb], Reinhold Kainhofer [ctb]",
      "Maintainer": "Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>",
      "Repository": "CRAN"
    },
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      "Package": "optparse",
      "Version": "1.7.5",
      "Source": "Repository",
      "Encoding": "UTF-8",
      "Type": "Package",
      "Title": "Command Line Option Parser",
      "Authors@R": "c(person(\"Trevor L.\", \"Davis\", role=c(\"aut\", \"cre\"), email=\"trevor.l.davis@gmail.com\", comment = c(ORCID = \"0000-0001-6341-4639\")), person(\"Allen\", \"Day\", role=\"ctb\", comment=\"Some documentation and examples ported from the getopt package.\"), person(\"Python Software Foundation\", role=\"ctb\", comment=\"Some documentation from the optparse Python module.\"), person(\"Steve\", \"Lianoglou\", role=\"ctb\"), person(\"Jim\", \"Nikelski\", role=\"ctb\"), person(\"Kirill\", \"Müller\", role=\"ctb\"), person(\"Peter\", \"Humburg\", role=\"ctb\"),  person(\"Rich\", \"FitzJohn\", role=\"ctb\"), person(\"Gyu Jin\", \"Choi\", role=\"ctb\"))",
      "Description": "A command line parser inspired by Python's 'optparse' library to be used with Rscript to write \"#!\" shebang scripts that accept short and long flag/options.",
      "License": "GPL (>= 2)",
      "Copyright": "See file (inst/)COPYRIGHTS.",
      "URL": "https://github.com/trevorld/r-optparse",
      "BugReports": "https://github.com/trevorld/r-optparse/issues",
      "LazyLoad": "yes",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "methods",
        "getopt (>= 1.20.2)"
      ],
      "Suggests": [
        "knitr (>= 1.15.19)",
        "stringr",
        "testthat"
      ],
      "VignetteBuilder": "knitr",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Trevor L. Davis [aut, cre] (<https://orcid.org/0000-0001-6341-4639>), Allen Day [ctb] (Some documentation and examples ported from the getopt package.), Python Software Foundation [ctb] (Some documentation from the optparse Python module.), Steve Lianoglou [ctb], Jim Nikelski [ctb], Kirill Müller [ctb], Peter Humburg [ctb], Rich FitzJohn [ctb], Gyu Jin Choi [ctb]",
      "Maintainer": "Trevor L. Davis <trevor.l.davis@gmail.com>",
      "Repository": "CRAN"
    },
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      "Package": "pROC",
      "Version": "1.18.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Display and Analyze ROC Curves",
      "Date": "2023-11-01",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 2.14)"
      ],
      "Imports": [
        "methods",
        "plyr",
        "Rcpp (>= 0.11.1)"
      ],
      "Suggests": [
        "microbenchmark",
        "tcltk",
        "MASS",
        "logcondens",
        "doParallel",
        "testthat",
        "vdiffr",
        "ggplot2",
        "rlang"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Authors@R": "c(person(\"Xavier\", \"Robin\", role = c(\"cre\", \"aut\"),  email = \"pROC-cran@xavier.robin.name\", comment = c(ORCID = \"0000-0002-6813-3200\")), person(\"Natacha\", \"Turck\", role = \"aut\"), person(\"Alexandre\", \"Hainard\", role = \"aut\"), person(\"Natalia\", \"Tiberti\", role = \"aut\"), person(\"Frédérique\", \"Lisacek\", role = \"aut\"), person(\"Jean-Charles\", \"Sanchez\", role = \"aut\"), person(\"Markus\", \"Müller\", role = \"aut\"), person(\"Stefan\", \"Siegert\", role = \"ctb\",  comment = \"Fast DeLong code\",  email = \"stefan_siegert@gmx.de\"), person(\"Matthias\", \"Doering\", role = \"ctb\",  comment = \"Hand & Till Multiclass\"), person(\"Zane\", \"Billings\", role = \"ctb\",  comment = \"DeLong paired test CI\"))",
      "Description": "Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.",
      "License": "GPL (>= 3)",
      "URL": "https://xrobin.github.io/pROC/",
      "BugReports": "https://github.com/xrobin/pROC/issues",
      "LazyData": "yes",
      "NeedsCompilation": "yes",
      "Author": "Xavier Robin [cre, aut] (<https://orcid.org/0000-0002-6813-3200>), Natacha Turck [aut], Alexandre Hainard [aut], Natalia Tiberti [aut], Frédérique Lisacek [aut], Jean-Charles Sanchez [aut], Markus Müller [aut], Stefan Siegert [ctb] (Fast DeLong code), Matthias Doering [ctb] (Hand & Till Multiclass), Zane Billings [ctb] (DeLong paired test CI)",
      "Maintainer": "Xavier Robin <pROC-cran@xavier.robin.name>",
      "Repository": "CRAN"
    },
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      "Package": "pals",
      "Version": "1.9",
      "Source": "Repository",
      "Title": "Color Palettes, Colormaps, and Tools to Evaluate Them",
      "Authors@R": "person(\"Kevin\", \"Wright\", , \"kw.stat@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-0617-8673\"))",
      "Description": "A comprehensive collection of color palettes, colormaps, and tools to evaluate them. See Kovesi (2015) <doi:10.48550/arXiv.1509.03700>.",
      "License": "MIT + file LICENSE",
      "URL": "https://kwstat.github.io/pals/",
      "BugReports": "https://github.com/kwstat/pals/issues",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Imports": [
        "colorspace",
        "dichromat",
        "graphics",
        "grDevices",
        "mapproj",
        "maps",
        "methods",
        "stats"
      ],
      "Suggests": [
        "classInt",
        "ggplot2",
        "knitr",
        "latticeExtra",
        "reshape2",
        "rgl",
        "rmarkdown",
        "testthat"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Kevin Wright [aut, cre, cph] (<https://orcid.org/0000-0002-0617-8673>)",
      "Maintainer": "Kevin Wright <kw.stat@gmail.com>",
      "Repository": "CRAN"
    },
    "parallelly": {
      "Package": "parallelly",
      "Version": "1.39.0",
      "Source": "Repository",
      "Title": "Enhancing the 'parallel' Package",
      "Imports": [
        "parallel",
        "tools",
        "utils"
      ],
      "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Mike\", \"Cheng\", role = c(\"ctb\"), email = \"mikefc@coolbutuseless.com\") )",
      "Description": "Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package.  For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.",
      "License": "LGPL (>= 2.1)",
      "LazyLoad": "TRUE",
      "ByteCompile": "TRUE",
      "URL": "https://parallelly.futureverse.org, https://github.com/HenrikBengtsson/parallelly",
      "BugReports": "https://github.com/HenrikBengtsson/parallelly/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Henrik Bengtsson [aut, cre, cph] (<https://orcid.org/0000-0002-7579-5165>), Mike Cheng [ctb]",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Repository": "CRAN"
    },
    "patchwork": {
      "Package": "patchwork",
      "Version": "1.3.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "The Composer of Plots",
      "Authors@R": "person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"cre\", \"aut\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\"))",
      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
      "Description": "The 'ggplot2' package provides a strong API for sequentially  building up a plot, but does not concern itself with composition of multiple plots. 'patchwork' is a package that expands the API to allow for  arbitrarily complex composition of plots by, among others, providing  mathematical operators for combining multiple plots. Other packages that try  to address this need (but with a different approach) are 'gridExtra' and  'cowplot'.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Imports": [
        "ggplot2 (>= 3.0.0)",
        "gtable",
        "grid",
        "stats",
        "grDevices",
        "utils",
        "graphics",
        "rlang (>= 1.0.0)",
        "cli",
        "farver"
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      "RoxygenNote": "7.3.2",
      "URL": "https://patchwork.data-imaginist.com, https://github.com/thomasp85/patchwork",
      "BugReports": "https://github.com/thomasp85/patchwork/issues",
      "Suggests": [
        "knitr",
        "rmarkdown",
        "gridGraphics",
        "gridExtra",
        "ragg",
        "testthat (>= 2.1.0)",
        "vdiffr",
        "covr",
        "png",
        "gt (>= 0.11.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "gifski",
      "NeedsCompilation": "no",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>)",
      "Repository": "CRAN"
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      "Package": "pbapply",
      "Version": "1.7-2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Adding Progress Bar to '*apply' Functions",
      "Date": "2023-06-27",
      "Authors@R": "c(person(given = \"Peter\", family = \"Solymos\", comment = c(ORCID = \"0000-0001-7337-1740\"), role = c(\"aut\", \"cre\"), email = \"psolymos@gmail.com\"), person(given = \"Zygmunt\", family = \"Zawadzki\", role = \"aut\", email = \"zygmunt@zstat.pl\"), person(given = \"Henrik\",  family = \"Bengtsson\",  role = \"ctb\", email = \"henrikb@braju.com\"), person(\"R Core Team\", role = c(\"cph\", \"ctb\")))",
      "Maintainer": "Peter Solymos <psolymos@gmail.com>",
      "Description": "A lightweight package that adds progress bar to vectorized R functions ('*apply'). The implementation can easily be added to functions where showing the progress is useful (e.g. bootstrap). The type and style of the progress bar (with percentages or remaining time) can be set through options. Supports several parallel processing backends including future.",
      "Depends": [
        "R (>= 3.2.0)"
      ],
      "Imports": [
        "parallel"
      ],
      "Suggests": [
        "shiny",
        "future",
        "future.apply"
      ],
      "License": "GPL (>= 2)",
      "URL": "https://github.com/psolymos/pbapply",
      "BugReports": "https://github.com/psolymos/pbapply/issues",
      "NeedsCompilation": "no",
      "Author": "Peter Solymos [aut, cre] (<https://orcid.org/0000-0001-7337-1740>), Zygmunt Zawadzki [aut], Henrik Bengtsson [ctb], R Core Team [cph, ctb]",
      "Repository": "CRAN"
    },
    "pbmcapply": {
      "Package": "pbmcapply",
      "Version": "1.5.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Tracking the Progress of Mc*pply with Progress Bar",
      "Author": "Kevin Kuang (aut), Quyu Kong (ctb), Francesco Napolitano (ctb)",
      "Maintainer": "Kevin kuang <kvn.kuang@mail.utoronto.ca>",
      "Description": "A light-weight package helps you track and visualize the progress of parallel version of vectorized R functions (mc*apply). Parallelization (mc.core > 1) works only on *nix (Linux, Unix such as macOS) system due to the lack of fork() functionality, which is essential for mc*apply, on Windows.",
      "Depends": [
        "utils",
        "parallel"
      ],
      "BugReports": "https://github.com/kvnkuang/pbmcapply/issues",
      "URL": "https://github.com/kvnkuang/pbmcapply",
      "License": "MIT + file LICENSE",
      "RoxygenNote": "6.1.1",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
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      "Package": "pheatmap",
      "Version": "1.0.12",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Pretty Heatmaps",
      "Date": "2018-12-26",
      "Author": "Raivo Kolde",
      "Maintainer": "Raivo Kolde <rkolde@gmail.com>",
      "Depends": [
        "R (>= 2.0)"
      ],
      "Description": "Implementation of heatmaps that offers more control over dimensions and appearance.",
      "Imports": [
        "grid",
        "RColorBrewer",
        "scales",
        "gtable",
        "stats",
        "grDevices",
        "graphics"
      ],
      "License": "GPL-2",
      "LazyLoad": "yes",
      "RoxygenNote": "6.0.1",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
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      "Package": "pillar",
      "Version": "1.9.0",
      "Source": "Repository",
      "Title": "Coloured Formatting for Columns",
      "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))",
      "Description": "Provides 'pillar' and 'colonnade' generics designed for formatting columns of data using the full range of colours provided by modern terminals.",
      "License": "MIT + file LICENSE",
      "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar",
      "BugReports": "https://github.com/r-lib/pillar/issues",
      "Imports": [
        "cli (>= 2.3.0)",
        "fansi",
        "glue",
        "lifecycle",
        "rlang (>= 1.0.2)",
        "utf8 (>= 1.1.0)",
        "utils",
        "vctrs (>= 0.5.0)"
      ],
      "Suggests": [
        "bit64",
        "DBI",
        "debugme",
        "DiagrammeR",
        "dplyr",
        "formattable",
        "ggplot2",
        "knitr",
        "lubridate",
        "nanotime",
        "nycflights13",
        "palmerpenguins",
        "rmarkdown",
        "scales",
        "stringi",
        "survival",
        "testthat (>= 3.1.1)",
        "tibble",
        "units (>= 0.7.2)",
        "vdiffr",
        "withr"
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      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2",
      "Config/autostyle/scope": "line_breaks",
      "Config/autostyle/strict": "true",
      "Config/gha/extra-packages": "DiagrammeR=?ignore-before-r=3.5.0",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], RStudio [cph]",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
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      "Package": "pkgconfig",
      "Version": "2.0.3",
      "Source": "Repository",
      "Title": "Private Configuration for 'R' Packages",
      "Author": "Gábor Csárdi",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Description": "Set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.",
      "License": "MIT + file LICENSE",
      "LazyData": "true",
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "covr",
        "testthat",
        "disposables (>= 1.0.3)"
      ],
      "URL": "https://github.com/r-lib/pkgconfig#readme",
      "BugReports": "https://github.com/r-lib/pkgconfig/issues",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "plogr": {
      "Package": "plogr",
      "Version": "0.2.0",
      "Source": "Repository",
      "Title": "The 'plog' C++ Logging Library",
      "Date": "2018-03-24",
      "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"krlmlr+r@mailbox.org\"), person(\"Sergey\", \"Podobry\", role = \"cph\", comment = \"Author of the bundled plog library\"))",
      "Description": "A simple header-only logging library for C++. Add 'LinkingTo: plogr' to 'DESCRIPTION', and '#include <plogr.h>' in your C++ modules to use it.",
      "Suggests": [
        "Rcpp"
      ],
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "URL": "https://github.com/krlmlr/plogr#readme",
      "BugReports": "https://github.com/krlmlr/plogr/issues",
      "RoxygenNote": "6.0.1.9000",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre], Sergey Podobry [cph] (Author of the bundled plog library)",
      "Maintainer": "Kirill Müller <krlmlr+r@mailbox.org>",
      "Repository": "CRAN"
    },
    "plotly": {
      "Package": "plotly",
      "Version": "4.10.4",
      "Source": "Repository",
      "Title": "Create Interactive Web Graphics via 'plotly.js'",
      "Authors@R": "c(person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"cpsievert1@gmail.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Chris\", \"Parmer\", role = \"aut\", email = \"chris@plot.ly\"), person(\"Toby\", \"Hocking\", role = \"aut\", email = \"tdhock5@gmail.com\"), person(\"Scott\", \"Chamberlain\", role = \"aut\", email = \"myrmecocystus@gmail.com\"), person(\"Karthik\", \"Ram\", role = \"aut\", email = \"karthik.ram@gmail.com\"), person(\"Marianne\", \"Corvellec\", role = \"aut\", email = \"marianne.corvellec@igdore.org\", comment = c(ORCID = \"0000-0002-1994-3581\")), person(\"Pedro\", \"Despouy\", role = \"aut\", email = \"pedro@plot.ly\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Plotly Technologies Inc.\", role = \"cph\"))",
      "License": "MIT + file LICENSE",
      "Description": "Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.",
      "URL": "https://plotly-r.com, https://github.com/plotly/plotly.R, https://plotly.com/r/",
      "BugReports": "https://github.com/plotly/plotly.R/issues",
      "Depends": [
        "R (>= 3.2.0)",
        "ggplot2 (>= 3.0.0)"
      ],
      "Imports": [
        "tools",
        "scales",
        "httr (>= 1.3.0)",
        "jsonlite (>= 1.6)",
        "magrittr",
        "digest",
        "viridisLite",
        "base64enc",
        "htmltools (>= 0.3.6)",
        "htmlwidgets (>= 1.5.2.9001)",
        "tidyr (>= 1.0.0)",
        "RColorBrewer",
        "dplyr",
        "vctrs",
        "tibble",
        "lazyeval (>= 0.2.0)",
        "rlang (>= 0.4.10)",
        "crosstalk",
        "purrr",
        "data.table",
        "promises"
      ],
      "Suggests": [
        "MASS",
        "maps",
        "hexbin",
        "ggthemes",
        "GGally",
        "ggalluvial",
        "testthat",
        "knitr",
        "shiny (>= 1.1.0)",
        "shinytest (>= 1.3.0)",
        "curl",
        "rmarkdown",
        "Cairo",
        "broom",
        "webshot",
        "listviewer",
        "dendextend",
        "sf",
        "png",
        "IRdisplay",
        "processx",
        "plotlyGeoAssets",
        "forcats",
        "withr",
        "palmerpenguins",
        "rversions",
        "reticulate",
        "rsvg"
      ],
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "Config/Needs/check": "tidyverse/ggplot2, rcmdcheck, devtools, reshape2",
      "NeedsCompilation": "no",
      "Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] (<https://orcid.org/0000-0002-1994-3581>), Pedro Despouy [aut], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Plotly Technologies Inc. [cph]",
      "Maintainer": "Carson Sievert <cpsievert1@gmail.com>",
      "Repository": "CRAN"
    },
    "plotrix": {
      "Package": "plotrix",
      "Version": "3.8-4",
      "Source": "Repository",
      "Date": "2023-11-09",
      "Title": "Various Plotting Functions",
      "Author": "Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi, Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby Engelmann,  Michael Hecker, Felix Steinbeck, Hans Borchers, Henrik Singmann, Ted Toal, Derek Ogle, Darshan Baral, Ulrike Groemping, Bill Venables, The CRAN Team, Duncan Murdoch",
      "Maintainer": "Duncan Murdoch <murdoch.duncan@gmail.com>",
      "Imports": [
        "grDevices",
        "graphics",
        "stats",
        "utils"
      ],
      "Description": "Lots of plots, various labeling, axis and color scaling functions. The author/maintainer died in September 2023.",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "no",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Repository": "CRAN",
      "URL": "https://github.com/dmurdoch/plotrix",
      "BugReports": "https://github.com/dmurdoch/plotrix/issues"
    },
    "plotthis": {
      "Package": "plotthis",
      "Version": "0.4.0",
      "Source": "Repository",
      "Title": "High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages",
      "Authors@R": "person(\"Panwen\", \"Wang\", , \"pwwang@pwwang.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4614-8970\"))",
      "Description": "Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly. It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects. It is particularly useful for creating complex plots with multiple layers, facets, and annotations. It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees. The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem. The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.",
      "License": "GPL (>= 3)",
      "Encoding": "UTF-8",
      "URL": "https://github.com/pwwang/plotthis https://pwwang.github.io/plotthis/",
      "BugReports": "https://github.com/pwwang/plotthis/issues",
      "RoxygenNote": "7.3.2",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Imports": [
        "circlize",
        "ggplot2",
        "rlang",
        "dplyr",
        "tidyr",
        "glue",
        "forcats",
        "gtable",
        "reshape2",
        "stringr",
        "scales",
        "gridtext",
        "methods",
        "patchwork",
        "ggrepel",
        "ggnewscale",
        "cowplot",
        "zoo"
      ],
      "Suggests": [
        "testthat",
        "ComplexHeatmap",
        "clustree",
        "gglogger",
        "ggwordcloud",
        "ggalluvial",
        "ggVennDiagram (>= 1.5.0)",
        "ggupset",
        "ggpubr",
        "ggforce",
        "ggraph",
        "ggridges",
        "hexbin",
        "igraph",
        "iNEXT",
        "scattermore",
        "concaveman",
        "plotROC",
        "OptimalCutpoints"
      ],
      "LazyData": "true",
      "Config/Needs/website": "rmarkdown",
      "NeedsCompilation": "no",
      "Author": "Panwen Wang [aut, cre] (<https://orcid.org/0000-0002-4614-8970>)",
      "Maintainer": "Panwen Wang <pwwang@pwwang.com>",
      "Repository": "CRAN"
    },
    "plyr": {
      "Package": "plyr",
      "Version": "1.8.9",
      "Source": "Repository",
      "Title": "Tools for Splitting, Applying and Combining Data",
      "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"))",
      "Description": "A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together.  For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.",
      "License": "MIT + file LICENSE",
      "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr",
      "BugReports": "https://github.com/hadley/plyr/issues",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "Rcpp (>= 0.11.0)"
      ],
      "Suggests": [
        "abind",
        "covr",
        "doParallel",
        "foreach",
        "iterators",
        "itertools",
        "tcltk",
        "testthat"
      ],
      "LinkingTo": [
        "Rcpp"
      ],
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut, cre]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "png": {
      "Package": "png",
      "Version": "0.1-8",
      "Source": "Repository",
      "Title": "Read and write PNG images",
      "Author": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
      "Depends": [
        "R (>= 2.9.0)"
      ],
      "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.",
      "License": "GPL-2 | GPL-3",
      "SystemRequirements": "libpng",
      "URL": "http://www.rforge.net/png/",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "polyclip": {
      "Package": "polyclip",
      "Version": "1.10-7",
      "Source": "Repository",
      "Date": "2024-07-23",
      "Title": "Polygon Clipping",
      "Authors@R": "c(person(\"Angus\", \"Johnson\", role = \"aut\",  comment=\"C++ original, http://www.angusj.com/delphi/clipper.php\"), person(\"Adrian\", \"Baddeley\", role = c(\"aut\", \"trl\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\"), person(\"Kurt\", \"Hornik\", role = \"ctb\"), person(c(\"Brian\", \"D.\"), \"Ripley\", role = \"ctb\"), person(\"Elliott\", \"Sales de Andrade\", role=\"ctb\"), person(\"Paul\", \"Murrell\", role = \"ctb\"), person(\"Ege\", \"Rubak\", role=\"ctb\"), person(\"Mark\", \"Padgham\", role=\"ctb\"))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Description": "R port of Angus Johnson's open source library 'Clipper'. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. Computes Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.",
      "License": "BSL",
      "URL": "https://www.angusj.com, https://sourceforge.net/projects/polyclipping, https://github.com/baddstats/polyclip",
      "BugReports": "https://github.com/baddstats/polyclip/issues",
      "ByteCompile": "true",
      "Note": "built from Clipper C++ version 6.4.0",
      "NeedsCompilation": "yes",
      "Author": "Angus Johnson [aut] (C++ original, http://www.angusj.com/delphi/clipper.php), Adrian Baddeley [aut, trl, cre], Kurt Hornik [ctb], Brian D. Ripley [ctb], Elliott Sales de Andrade [ctb], Paul Murrell [ctb], Ege Rubak [ctb], Mark Padgham [ctb]",
      "Repository": "CRAN"
    },
    "pracma": {
      "Package": "pracma",
      "Version": "2.4.6",
      "Source": "Repository",
      "Type": "Package",
      "Date": "2025-10-20",
      "Title": "Practical Numerical Math Functions",
      "Authors@R": "person(\"Hans W.\", \"Borchers\",  email=\"hwborchers@googlemail.com\",  role=c(\"aut\", \"cre\"))",
      "Depends": [
        "R (>= 3.1.0)"
      ],
      "Imports": [
        "graphics",
        "grDevices",
        "stats",
        "utils"
      ],
      "Suggests": [
        "NlcOptim",
        "quadprog"
      ],
      "Description": "Provides a large number of functions from numerical analysis and linear algebra, numerical optimization, differential equations, time series, plus some well-known special mathematical functions. Uses 'MATLAB' function names where appropriate to simplify porting.",
      "License": "GPL (>= 3)",
      "ByteCompile": "true",
      "LazyData": "yes",
      "NeedsCompilation": "no",
      "Author": "Hans W. Borchers [aut, cre]",
      "Maintainer": "Hans W. Borchers <hwborchers@googlemail.com>",
      "Repository": "CRAN"
    },
    "presto": {
      "Package": "presto",
      "Version": "1.0.0",
      "Source": "GitHub",
      "Title": "Fast Functions for Differential Expression using Wilcox and AUC",
      "Authors@R": "c( person(\"Ilya\", \"Korsunsky\", email = \"ilya.korsunsky@gmail.com\",  role = c(\"aut\"), comment = c(ORCID = \"0000-0003-4848-3948\")), person(\"Aparna\", \"Nathan\",  role = \"aut\"), person(\"Nghia\", \"Millard\",  role = \"aut\", comment = c(ORCID = \"0000-0002-0518-7674\")), person(\"Soumya\", \"Raychaudhuri\",  role = c(\"aut\"), comment = c(ORCID = \"0000-0002-1901-8265\")), person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"cre\", \"ctb\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Austin\", \"Hartman\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-7278-1852\")) )",
      "Description": "Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.",
      "License": "GPL-3",
      "LazyData": "true",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 3.4.0)",
        "Rcpp",
        "data.table"
      ],
      "LinkingTo": [
        "Rcpp",
        "RcppArmadillo"
      ],
      "biocViews": "",
      "Imports": [
        "dplyr",
        "methods",
        "tidyr",
        "purrr",
        "tibble",
        "Matrix",
        "rlang",
        "stats",
        "utils"
      ],
      "RoxygenNote": "7.2.1",
      "Suggests": [
        "knitr",
        "rmarkdown",
        "testthat",
        "Seurat",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "broom",
        "BiocStyle",
        "DESeq2"
      ],
      "NeedsCompilation": "yes",
      "VignetteBuilder": "knitr",
      "Author": "Ilya Korsunsky [aut] (<https://orcid.org/0000-0003-4848-3948>), Aparna Nathan [aut], Nghia Millard [aut] (<https://orcid.org/0000-0002-0518-7674>), Soumya Raychaudhuri [aut] (<https://orcid.org/0000-0002-1901-8265>), Kamil Slowikowski [cre, ctb] (<https://orcid.org/0000-0002-2843-6370>), Austin Hartman [ctb] (<https://orcid.org/0000-0001-7278-1852>)",
      "Maintainer": "Kamil Slowikowski <kslowikowski@gmail.com>",
      "RemoteType": "github",
      "RemoteHost": "api.github.com",
      "RemoteUsername": "immunogenomics",
      "RemoteRepo": "presto",
      "RemoteRef": "master",
      "RemoteSha": "7636b3d0465c468c35853f82f1717d3a64b3c8f6"
    },
    "prettyunits": {
      "Package": "prettyunits",
      "Version": "1.2.0",
      "Source": "Repository",
      "Title": "Pretty, Human Readable Formatting of Quantities",
      "Authors@R": "c( person(\"Gabor\", \"Csardi\", email=\"csardi.gabor@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email=\"wdenney@humanpredictions.com\", role=c(\"ctb\"), comment=c(ORCID=\"0000-0002-5759-428X\")), person(\"Christophe\", \"Regouby\", email=\"christophe.regouby@free.fr\", role=c(\"ctb\")) )",
      "Description": "Pretty, human readable formatting of quantities. Time intervals: '1337000' -> '15d 11h 23m 20s'. Vague time intervals: '2674000' -> 'about a month ago'. Bytes: '1337' -> '1.34 kB'. Rounding: '99' with 3 significant digits -> '99.0' p-values: '0.00001' -> '<0.0001'. Colors: '#FF0000' -> 'red'. Quantities: '1239437' -> '1.24 M'.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/prettyunits",
      "BugReports": "https://github.com/r-lib/prettyunits/issues",
      "Depends": [
        "R(>= 2.10)"
      ],
      "Suggests": [
        "codetools",
        "covr",
        "testthat"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "no",
      "Author": "Gabor Csardi [aut, cre], Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>), Christophe Regouby [ctb]",
      "Maintainer": "Gabor Csardi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "progress": {
      "Package": "progress",
      "Version": "1.2.3",
      "Source": "Repository",
      "Title": "Terminal Progress Bars",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Rich\", \"FitzJohn\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. The package also provides a 'C++' 'API', that works with or without 'Rcpp'.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/progress#readme, http://r-lib.github.io/progress/",
      "BugReports": "https://github.com/r-lib/progress/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "crayon",
        "hms",
        "prettyunits",
        "R6"
      ],
      "Suggests": [
        "Rcpp",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Rich FitzJohn [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
    },
    "progressr": {
      "Package": "progressr",
      "Version": "0.15.0",
      "Source": "Repository",
      "Title": "An Inclusive, Unifying API for Progress Updates",
      "Description": "A minimal, unifying API for scripts and packages to report progress updates from anywhere including when using parallel processing.  The package is designed such that the developer can to focus on what progress should be reported on without having to worry about how to present it.  The end user has full control of how, where, and when to render these progress updates, e.g. in the terminal using utils::txtProgressBar(), cli::cli_progress_bar(), in a graphical user interface using utils::winProgressBar(), tcltk::tkProgressBar() or shiny::withProgress(), via the speakers using beepr::beep(), or on a file system via the size of a file. Anyone can add additional, customized, progression handlers. The 'progressr' package uses R's condition framework for signaling progress updated. Because of this, progress can be reported from almost anywhere in R, e.g. from classical for and while loops, from map-reduce API:s like the lapply() family of functions, 'purrr', 'plyr', and 'foreach'. It will also work with parallel processing via the 'future' framework, e.g. future.apply::future_lapply(), furrr::future_map(), and 'foreach' with 'doFuture'. The package is compatible with Shiny applications.",
      "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role = c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\", comment = c(ORCID = \"0000-0002-7579-5165\")))",
      "License": "GPL (>= 3)",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "digest",
        "utils"
      ],
      "Suggests": [
        "graphics",
        "tcltk",
        "beepr",
        "cli",
        "crayon",
        "pbmcapply",
        "progress",
        "purrr",
        "foreach",
        "plyr",
        "doFuture",
        "future",
        "future.apply",
        "furrr",
        "RPushbullet",
        "rstudioapi",
        "shiny",
        "commonmark",
        "base64enc",
        "tools"
      ],
      "VignetteBuilder": "progressr",
      "URL": "https://progressr.futureverse.org, https://github.com/futureverse/progressr",
      "BugReports": "https://github.com/futureverse/progressr/issues",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "no",
      "Author": "Henrik Bengtsson [aut, cre, cph] (<https://orcid.org/0000-0002-7579-5165>)",
      "Maintainer": "Henrik Bengtsson <henrikb@braju.com>",
      "Repository": "CRAN"
    },
    "promises": {
      "Package": "promises",
      "Version": "1.3.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Abstractions for Promise-Based Asynchronous Programming",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides fundamental abstractions for doing asynchronous programming in R using promises. Asynchronous programming is useful for allowing a single R process to orchestrate multiple tasks in the background while also attending to something else. Semantics are similar to 'JavaScript' promises, but with a syntax that is idiomatic R.",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/promises/, https://github.com/rstudio/promises",
      "BugReports": "https://github.com/rstudio/promises/issues",
      "Imports": [
        "fastmap (>= 1.1.0)",
        "later",
        "magrittr (>= 1.5)",
        "R6",
        "Rcpp",
        "rlang",
        "stats"
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        "knitr",
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      "Source": "Repository",
      "Title": "Functional Programming Tools",
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      "Description": "A complete and consistent functional programming toolkit for R.",
      "License": "MIT + file LICENSE",
      "URL": "https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr",
      "BugReports": "https://github.com/tidyverse/purrr/issues",
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        "R (>= 3.5.0)"
      ],
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        "vctrs (>= 0.6.3)"
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        "dplyr (>= 0.7.8)",
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        "lubridate",
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      "Biarch": "true",
      "Config/Needs/website": "tidyverse/tidytemplate, tidyr",
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      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
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      "Title": "Creates Simultaneous Testing Bands for QQ-Plots",
      "Authors@R": "c( person(\"Eric\", \"Weine\", email = \"ericweine15@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Mary Sara\", \"McPeek\", email = \"mcpeek@uchicago.edu\", role = \"aut\"), person(\"Abney\", \"Mark\", email = \"abney@uchicago.edu\", role = \"aut\"))",
      "Description": "Provides functionality for creating Quantile-Quantile (QQ) and Probability-Probability (PP) plots with simultaneous  testing bands to asses significance of sample deviation from a reference distribution <doi:10.18637/jss.v106.i10>.",
      "License": "GPL-3",
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        "distr (>= 2.8.0)"
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      "VignetteBuilder": "knitr",
      "LinkingTo": [
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      "URL": "https://github.com/eweine/qqconf",
      "BugReports": "https://github.com/eweine/qqconf/issues",
      "NeedsCompilation": "yes",
      "Author": "Eric Weine [aut, cre], Mary Sara McPeek [aut], Abney Mark [aut]",
      "Maintainer": "Eric Weine <ericweine15@gmail.com>",
      "Repository": "CRAN"
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      "Source": "Repository",
      "Type": "Package",
      "Title": "Functions to Solve Quadratic Programming Problems",
      "Date": "2019-11-20",
      "Author": "S original by Berwin A. Turlach <Berwin.Turlach@gmail.com>  R port by Andreas Weingessel <Andreas.Weingessel@ci.tuwien.ac.at> Fortran contributions from Cleve Moler (dposl/LINPACK and (a modified version of) dpodi/LINPACK)",
      "Maintainer": "Berwin A. Turlach <Berwin.Turlach@gmail.com>",
      "Description": "This package contains routines and documentation for solving quadratic programming problems.",
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        "R (>= 3.1.0)"
      ],
      "License": "GPL (>= 2)",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Description": "Estimation and inference methods for models for conditional quantile functions:  Linear and nonlinear parametric and non-parametric (total variation penalized) models  for conditional quantiles of a univariate response and several methods for handling censored survival data.  Portfolio selection methods based on expected shortfall risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press, <doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression,  CRC Press, <doi:10.1201/9781315120256>.",
      "Authors@R": "c( person(\"Roger\", \"Koenker\",  role = c(\"cre\",\"aut\"), email =  \"rkoenker@illinois.edu\"), person(\"Stephen\", \"Portnoy\",  role = c(\"ctb\"),  comment = \"Contributions to Censored QR code\", email =  \"sportnoy@illinois.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\",  role = c(\"ctb\"),  comment = \"Contributions to Sparse QR code\", email =  \"pin.ng@nau.edu\"), person(\"Blaise\", \"Melly\",  role = c(\"ctb\"),  comment = \"Contributions to preprocessing code\", email =  \"mellyblaise@gmail.com\"), person(\"Achim\", \"Zeileis\",  role = c(\"ctb\"),  comment = \"Contributions to dynrq code essentially identical to his dynlm code\",  email =  \"Achim.Zeileis@uibk.ac.at\"), person(\"Philip\", \"Grosjean\",  role = c(\"ctb\"),  comment = \"Contributions to nlrq code\", email =  \"phgrosjean@sciviews.org\"), person(\"Cleve\", \"Moler\",  role = c(\"ctb\"),  comment = \"author of several linpack routines\"), person(\"Yousef\", \"Saad\",  role = c(\"ctb\"),  comment = \"author of sparskit2\"), person(\"Victor\", \"Chernozhukov\",  role = c(\"ctb\"),  comment = \"contributions to extreme value inference code\"), person(\"Ivan\", \"Fernandez-Val\",  role = c(\"ctb\"),  comment = \"contributions to extreme value inference code\"), person(c(\"Brian\", \"D\"), \"Ripley\",  role = c(\"trl\",\"ctb\"),  comment = \"Initial (2001) R port from S (to my everlasting shame --  how could I have been so slow to adopt R!) and for numerous other  suggestions and useful advice\", email =  \"ripley@stats.ox.ac.uk\"))",
      "Maintainer": "Roger Koenker <rkoenker@illinois.edu>",
      "Repository": "CRAN",
      "Depends": [
        "R (>= 3.5)",
        "stats",
        "SparseM"
      ],
      "Imports": [
        "methods",
        "graphics",
        "Matrix",
        "MatrixModels",
        "survival",
        "MASS"
      ],
      "Suggests": [
        "interp",
        "rgl",
        "logspline",
        "nor1mix",
        "Formula",
        "zoo",
        "R.rsp",
        "conquer"
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      "License": "GPL (>= 2)",
      "URL": "https://www.r-project.org",
      "NeedsCompilation": "yes",
      "VignetteBuilder": "R.rsp",
      "Author": "Roger Koenker [cre, aut], Stephen Portnoy [ctb] (Contributions to Censored QR code), Pin Tian Ng [ctb] (Contributions to Sparse QR code), Blaise Melly [ctb] (Contributions to preprocessing code), Achim Zeileis [ctb] (Contributions to dynrq code essentially identical to his dynlm code), Philip Grosjean [ctb] (Contributions to nlrq code), Cleve Moler [ctb] (author of several linpack routines), Yousef Saad [ctb] (author of sparskit2), Victor Chernozhukov [ctb] (contributions to extreme value inference code), Ivan Fernandez-Val [ctb] (contributions to extreme value inference code), Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice)"
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      "Type": "Package",
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      "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Maxim\", \"Shemanarev\", role = c(\"aut\", \"cph\"), comment = \"Author of AGG\"), person(\"Tony\", \"Juricic\", , \"tonygeek@yahoo.com\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Milan\", \"Marusinec\", , \"milan@marusinec.sk\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Spencer\", \"Garrett\", role = \"ctb\", comment = \"Contributor to AGG\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Description": "Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D drawing library. The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.",
      "License": "MIT + file LICENSE",
      "URL": "https://ragg.r-lib.org, https://github.com/r-lib/ragg",
      "BugReports": "https://github.com/r-lib/ragg/issues",
      "Imports": [
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        "textshaping (>= 0.3.0)"
      ],
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        "graphics",
        "grid",
        "testthat (>= 3.0.0)"
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        "systemfonts",
        "textshaping"
      ],
      "Config/Needs/website": "ggplot2, devoid, magick, bench, tidyr, ggridges, hexbin, sessioninfo, pkgdown, tidyverse/tidytemplate",
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      "SystemRequirements": "freetype2, libpng, libtiff, libjpeg",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit, PBC [cph, fnd]",
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      "Version": "0.3.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs",
      "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = c(\"trl\", \"cre\", \"cph\"), email = \"hadley@rstudio.com\"), person(given = \"RStudio\", role = \"cph\"), person(given = \"Sridhar\", family = \"Ratnakumar\", role = \"aut\"), person(given = \"Trent\", family = \"Mick\", role = \"aut\"), person(given = \"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(given = \"Eddy\", family = \"Petrisor\", role = \"ctb\"), person(given = \"Trevor\", family = \"Davis\", role = c(\"trl\", \"aut\")), person(given = \"Gabor\", family = \"Csardi\", role = \"ctb\"), person(given = \"Gregory\", family = \"Jefferis\", role = \"ctb\"))",
      "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' (<https://github.com/ActiveState/appdirs>) to R.",
      "License": "MIT + file LICENSE",
      "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs",
      "BugReports": "https://github.com/r-lib/rappdirs/issues",
      "Depends": [
        "R (>= 3.2)"
      ],
      "Suggests": [
        "roxygen2",
        "testthat (>= 3.0.0)",
        "covr",
        "withr"
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      "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, RStudio. See file LICENSE for details.",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.1.1",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]",
      "Maintainer": "Hadley Wickham <hadley@rstudio.com>",
      "Repository": "CRAN"
    },
    "rbibutils": {
      "Package": "rbibutils",
      "Version": "2.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Read 'Bibtex' Files and Convert Between Bibliography Formats",
      "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\",  role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = \"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\" ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )",
      "Description": "Read and write 'Bibtex' files. Convert between bibliography formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and 'Bibentry'.  Includes a port of the 'bibutils' utilities by Chris Putnam <https://sourceforge.net/projects/bibutils/>. Supports all bibliography formats and character encodings implemented in 'bibutils'.",
      "License": "GPL-2",
      "URL": "https://geobosh.github.io/rbibutils/ (doc), https://github.com/GeoBosh/rbibutils (devel)",
      "BugReports": "https://github.com/GeoBosh/rbibutils/issues",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Imports": [
        "utils",
        "tools"
      ],
      "Suggests": [
        "testthat"
      ],
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "Config/Needs/memcheck": "devtools, rcmdcheck",
      "Author": "Georgi N. Boshnakov [aut, cre] (R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)",
      "Maintainer": "Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>",
      "Repository": "CRAN"
    },
    "readr": {
      "Package": "readr",
      "Version": "2.1.5",
      "Source": "Repository",
      "Title": "Read Rectangular Text Data",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )",
      "Description": "The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf').  It is designed to flexibly parse many types of data found in the wild, while still cleanly failing when data unexpectedly changes.",
      "License": "MIT + file LICENSE",
      "URL": "https://readr.tidyverse.org, https://github.com/tidyverse/readr",
      "BugReports": "https://github.com/tidyverse/readr/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli (>= 3.2.0)",
        "clipr",
        "crayon",
        "hms (>= 0.4.1)",
        "lifecycle (>= 0.2.0)",
        "methods",
        "R6",
        "rlang",
        "tibble",
        "utils",
        "vroom (>= 1.6.0)"
      ],
      "Suggests": [
        "covr",
        "curl",
        "datasets",
        "knitr",
        "rmarkdown",
        "spelling",
        "stringi",
        "testthat (>= 3.2.0)",
        "tzdb (>= 0.1.1)",
        "waldo",
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        "xml2"
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      "LinkingTo": [
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        "tzdb (>= 0.1.1)"
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse, tidyverse/tidytemplate",
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      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut], Jim Hester [aut], Romain Francois [ctb], Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Shelby Bearrows [ctb], Posit Software, PBC [cph, fnd], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [ctb, cph] (grisu3 implementation), Mikkel Jørgensen [ctb, cph] (grisu3 implementation)",
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      "Repository": "CRAN"
    },
    "remotes": {
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      "Version": "2.5.0",
      "Source": "Repository",
      "Title": "R Package Installation from Remote Repositories, Including 'GitHub'",
      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Martin\", \"Morgan\", role = \"aut\"), person(\"Dan\", \"Tenenbaum\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = \"cph\") )",
      "Description": "Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories.  This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.",
      "License": "MIT + file LICENSE",
      "URL": "https://remotes.r-lib.org, https://github.com/r-lib/remotes#readme",
      "BugReports": "https://github.com/r-lib/remotes/issues",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "methods",
        "stats",
        "tools",
        "utils"
      ],
      "Suggests": [
        "brew",
        "callr",
        "codetools",
        "covr",
        "curl",
        "git2r (>= 0.23.0)",
        "knitr",
        "mockery",
        "pingr",
        "pkgbuild (>= 1.0.1)",
        "rmarkdown",
        "rprojroot",
        "testthat (>= 3.0.0)",
        "webfakes",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "SystemRequirements": "Subversion for install_svn, git for install_git",
      "NeedsCompilation": "no",
      "Author": "Gábor Csárdi [aut, cre], Jim Hester [aut], Hadley Wickham [aut], Winston Chang [aut], Martin Morgan [aut], Dan Tenenbaum [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph]",
      "Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
      "Repository": "CRAN"
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      "Version": "1.0.11",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Project Environments",
      "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@rstudio.com\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/renv/, https://github.com/rstudio/renv",
      "BugReports": "https://github.com/rstudio/renv/issues",
      "Imports": [
        "utils"
      ],
      "Suggests": [
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        "cli",
        "compiler",
        "covr",
        "cpp11",
        "devtools",
        "gitcreds",
        "jsonlite",
        "jsonvalidate",
        "knitr",
        "miniUI",
        "modules",
        "packrat",
        "pak",
        "R6",
        "remotes",
        "reticulate",
        "rmarkdown",
        "rstudioapi",
        "shiny",
        "testthat",
        "uuid",
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        "yaml",
        "webfakes"
      ],
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      "RoxygenNote": "7.3.2",
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "true",
      "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes",
      "NeedsCompilation": "no",
      "Author": "Kevin Ushey [aut, cre] (<https://orcid.org/0000-0003-2880-7407>), Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Kevin Ushey <kevin@rstudio.com>",
      "Repository": "CRAN"
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    "reshape2": {
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      "Version": "1.4.4",
      "Source": "Repository",
      "Title": "Flexibly Reshape Data: A Reboot of the Reshape Package",
      "Author": "Hadley Wickham <h.wickham@gmail.com>",
      "Maintainer": "Hadley Wickham <h.wickham@gmail.com>",
      "Description": "Flexibly restructure and aggregate data using just two functions: melt and 'dcast' (or 'acast').",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/hadley/reshape",
      "BugReports": "https://github.com/hadley/reshape/issues",
      "Depends": [
        "R (>= 3.1)"
      ],
      "Imports": [
        "plyr (>= 1.8.1)",
        "Rcpp",
        "stringr"
      ],
      "Suggests": [
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      "LazyData": "true",
      "RoxygenNote": "7.1.0",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
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      "Package": "restfulr",
      "Version": "0.0.15",
      "Source": "Repository",
      "Type": "Package",
      "Title": "R Interface to RESTful Web Services",
      "Author": "Michael Lawrence",
      "Maintainer": "Michael Lawrence <michafla@gene.com>",
      "Description": "Models a RESTful service as if it were a nested R list.",
      "License": "Artistic-2.0",
      "Imports": [
        "XML",
        "RCurl",
        "rjson",
        "S4Vectors (>= 0.13.15)",
        "yaml"
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        "R (>= 3.4.0)",
        "methods"
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        "rsolr",
        "RUnit"
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      "Collate": "CRUDProtocol-class.R CacheInfo-class.R Credentials-class.R HTTP-class.R Media-class.R MediaCache-class.R RestUri-class.R RestContainer-class.R test_restfulr_package.R utils.R",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
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      "Version": "1.39.0",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Interface to 'Python'",
      "Authors@R": "c( person(\"Tomasz\", \"Kalinowski\", role = c(\"ctb\", \"cre\"), email = \"tomasz@posit.co\"), person(\"Kevin\", \"Ushey\", role = c(\"aut\"), email = \"kevin@posit.co\"), person(\"JJ\", \"Allaire\", role = c(\"aut\"), email = \"jj@posit.co\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")), person(\"Yuan\", \"Tang\", role = c(\"aut\", \"cph\"), email = \"terrytangyuan@gmail.com\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"ctb\", \"cph\"), email = \"edd@debian.org\"), person(\"Bryan\", \"Lewis\", role = c(\"ctb\", \"cph\"), email = \"blewis@illposed.net\"), person(\"Sigrid\", \"Keydana\", role = c(\"ctb\"), email = \"sigrid@posit.co\"), person(\"Ryan\", \"Hafen\", role = c(\"ctb\", \"cph\"), email = \"rhafen@gmail.com\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyThread library, http://tinythreadpp.bitsnbites.eu/\") )",
      "Description": "Interface to 'Python' modules, classes, and functions. When calling into 'Python', R data types are automatically converted to their equivalent 'Python' types. When values are returned from 'Python' to R they are converted back to R types. Compatible with all versions of 'Python' >= 2.7.",
      "License": "Apache License 2.0",
      "URL": "https://rstudio.github.io/reticulate/, https://github.com/rstudio/reticulate",
      "BugReports": "https://github.com/rstudio/reticulate/issues",
      "SystemRequirements": "Python (>= 2.7.0)",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 3.5)"
      ],
      "Imports": [
        "Matrix",
        "Rcpp (>= 1.0.7)",
        "RcppTOML",
        "graphics",
        "here",
        "jsonlite",
        "methods",
        "png",
        "rappdirs",
        "utils",
        "rlang",
        "withr"
      ],
      "Suggests": [
        "callr",
        "knitr",
        "glue",
        "cli",
        "rmarkdown",
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      "RoxygenNote": "7.3.2",
      "VignetteBuilder": "knitr",
      "Config/build/compilation-database": "true",
      "NeedsCompilation": "yes",
      "Author": "Tomasz Kalinowski [ctb, cre], Kevin Ushey [aut], JJ Allaire [aut], RStudio [cph, fnd], Yuan Tang [aut, cph] (<https://orcid.org/0000-0001-5243-233X>), Dirk Eddelbuettel [ctb, cph], Bryan Lewis [ctb, cph], Sigrid Keydana [ctb], Ryan Hafen [ctb, cph], Marcus Geelnard [ctb, cph] (TinyThread library, http://tinythreadpp.bitsnbites.eu/)",
      "Maintainer": "Tomasz Kalinowski <tomasz@posit.co>",
      "Repository": "CRAN"
    },
    "rhdf5": {
      "Package": "rhdf5",
      "Version": "2.48.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "R Interface to HDF5",
      "Authors@R": "c(person(\"Bernd\", \"Fischer\", role = c(\"aut\")),  person(\"Mike\", \"Smith\",  role=c(\"aut\", \"cre\"),  email = \"mike.smith@embl.de\", comment = c(ORCID = \"0000-0002-7800-3848\") ), person(\"Gregoire\", \"Pau\", role=\"aut\"), person(\"Martin\", \"Morgan\", role = \"ctb\"), person(\"Daniel\", \"van Twisk\", role = \"ctb\"))",
      "Description": "This package provides an interface between HDF5 and R.  HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk)  through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other  software package, and for letting R applications work on datasets that are  larger than the available RAM.",
      "License": "Artistic-2.0",
      "URL": "https://github.com/grimbough/rhdf5",
      "BugReports": "https://github.com/grimbough/rhdf5/issues",
      "LazyLoad": "true",
      "VignetteBuilder": "knitr",
      "Imports": [
        "Rhdf5lib (>= 1.13.4)",
        "rhdf5filters (>= 1.15.5)"
      ],
      "Depends": [
        "R (>= 4.0.0)",
        "methods"
      ],
      "Suggests": [
        "bit64",
        "BiocStyle",
        "knitr",
        "rmarkdown",
        "testthat",
        "bench",
        "dplyr",
        "ggplot2",
        "mockery",
        "BiocParallel"
      ],
      "LinkingTo": [
        "Rhdf5lib"
      ],
      "SystemRequirements": "GNU make",
      "biocViews": "Infrastructure, DataImport",
      "Encoding": "UTF-8",
      "Roxygen": "list(markdown = TRUE)",
      "RoxygenNote": "7.3.1",
      "git_url": "https://git.bioconductor.org/packages/rhdf5",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "9541eda",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "yes",
      "Author": "Bernd Fischer [aut], Mike Smith [aut, cre] (<https://orcid.org/0000-0002-7800-3848>), Gregoire Pau [aut], Martin Morgan [ctb], Daniel van Twisk [ctb]",
      "Maintainer": "Mike Smith <mike.smith@embl.de>"
    },
    "rhdf5filters": {
      "Package": "rhdf5filters",
      "Version": "1.16.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "HDF5 Compression Filters",
      "Authors@R": "c(person(\"Mike\", \"Smith\",  role=c(\"aut\", \"cre\"),  email = \"grimbough@gmail.com\", comment = c(ORCID = \"0000-0002-7800-3848\")) )",
      "Description": "Provides a collection of additional compression filters for HDF5  datasets. The package is intended to provide seemless integration with  rhdf5, however the compiled filters can also be used with external  applications.",
      "License": "BSD_2_clause + file LICENSE",
      "LazyLoad": "true",
      "VignetteBuilder": "knitr",
      "Suggests": [
        "BiocStyle",
        "knitr",
        "rmarkdown",
        "tinytest",
        "rhdf5 (>= 2.47.7)"
      ],
      "SystemRequirements": "GNU make",
      "URL": "https://github.com/grimbough/rhdf5filters",
      "BugReports": "https://github.com/grimbough/rhdf5filters",
      "LinkingTo": [
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      "Encoding": "UTF-8",
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      "git_branch": "RELEASE_3_19",
      "git_last_commit": "1d29c0e",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "yes",
      "Author": "Mike Smith [aut, cre] (<https://orcid.org/0000-0002-7800-3848>)",
      "Maintainer": "Mike Smith <grimbough@gmail.com>"
    },
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      "Version": "0.2.23",
      "Source": "Repository",
      "Title": "JSON for R",
      "Author": "Alex Couture-Beil [aut, cre]",
      "Authors@R": "person(given = \"Alex\", family = \"Couture-Beil\", role = c(\"aut\", \"cre\"), email = \"rjson_pkg@mofo.ca\")",
      "Maintainer": "Alex Couture-Beil <rjson_pkg@mofo.ca>",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Description": "Converts R object into JSON objects and vice-versa.",
      "URL": "https://github.com/alexcb/rjson",
      "License": "GPL-2",
      "Repository": "CRAN",
      "NeedsCompilation": "yes"
    },
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      "Package": "rlang",
      "Version": "1.1.4",
      "Source": "Repository",
      "Title": "Functions for Base Types and Core R and 'Tidyverse' Features",
      "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.",
      "Authors@R": "c( person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"), person(given = \"mikefc\", email = \"mikefc@coolbutuseless.com\",  role = \"cph\",  comment = \"Hash implementation based on Mike's xxhashlite\"), person(given = \"Yann\", family = \"Collet\", role = \"cph\",  comment = \"Author of the embedded xxHash library\"), person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "License": "MIT + file LICENSE",
      "ByteCompile": "true",
      "Biarch": "true",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "utils"
      ],
      "Suggests": [
        "cli (>= 3.1.0)",
        "covr",
        "crayon",
        "fs",
        "glue",
        "knitr",
        "magrittr",
        "methods",
        "pillar",
        "rmarkdown",
        "stats",
        "testthat (>= 3.0.0)",
        "tibble",
        "usethis",
        "vctrs (>= 0.2.3)",
        "withr"
      ],
      "Enhances": [
        "winch"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang",
      "BugReports": "https://github.com/r-lib/rlang/issues",
      "Config/testthat/edition": "3",
      "Config/Needs/website": "dplyr, tidyverse/tidytemplate",
      "NeedsCompilation": "yes",
      "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], mikefc [cph] (Hash implementation based on Mike's xxhashlite), Yann Collet [cph] (Author of the embedded xxHash library), Posit, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
    },
    "rmarkdown": {
      "Package": "rmarkdown",
      "Version": "2.29",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Dynamic Documents for R",
      "Authors@R": "c( person(\"JJ\", \"Allaire\", , \"jj@posit.co\", role = \"aut\"), person(\"Yihui\", \"Xie\", , \"xie@yihui.name\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Jonathan\", \"McPherson\", , \"jonathan@posit.co\", role = \"aut\"), person(\"Javier\", \"Luraschi\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevin@posit.co\", role = \"aut\"), person(\"Aron\", \"Atkins\", , \"aron@posit.co\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Andrew\", \"Dunning\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0464-5036\")), person(\"Atsushi\", \"Yasumoto\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-8335-495X\", cph = \"Number sections Lua filter\")), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Carson\", \"Sievert\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4958-2844\")),  person(\"Devon\", \"Ryan\", , \"dpryan79@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Jeff\", \"Allen\", , \"jeff@posit.co\", role = \"ctb\"),  person(\"JooYoung\", \"Seo\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Malcolm\", \"Barrett\", role = \"ctb\"), person(\"Rob\", \"Hyndman\", , \"Rob.Hyndman@monash.edu\", role = \"ctb\"), person(\"Romain\", \"Lesur\", role = \"ctb\"), person(\"Roy\", \"Storey\", role = \"ctb\"), person(\"Ruben\", \"Arslan\", , \"ruben.arslan@uni-goettingen.de\", role = \"ctb\"), person(\"Sergio\", \"Oller\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Alexander\", \"Farkas\", role = c(\"ctb\", \"cph\"), comment = \"html5shiv library\"), person(\"Scott\", \"Jehl\", role = c(\"ctb\", \"cph\"), comment = \"Respond.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(\"Greg\", \"Franko\", role = c(\"ctb\", \"cph\"), comment = \"tocify library\"), person(\"John\", \"MacFarlane\", role = c(\"ctb\", \"cph\"), comment = \"Pandoc templates\"), person(, \"Google, Inc.\", role = c(\"ctb\", \"cph\"), comment = \"ioslides library\"), person(\"Dave\", \"Raggett\", role = \"ctb\", comment = \"slidy library\"), person(, \"W3C\", role = \"cph\", comment = \"slidy library\"), person(\"Dave\", \"Gandy\", role = c(\"ctb\", \"cph\"), comment = \"Font-Awesome\"), person(\"Ben\", \"Sperry\", role = \"ctb\", comment = \"Ionicons\"), person(, \"Drifty\", role = \"cph\", comment = \"Ionicons\"), person(\"Aidan\", \"Lister\", role = c(\"ctb\", \"cph\"), comment = \"jQuery StickyTabs\"), person(\"Benct Philip\", \"Jonsson\", role = c(\"ctb\", \"cph\"), comment = \"pagebreak Lua filter\"), person(\"Albert\", \"Krewinkel\", role = c(\"ctb\", \"cph\"), comment = \"pagebreak Lua filter\") )",
      "Description": "Convert R Markdown documents into a variety of formats.",
      "License": "GPL-3",
      "URL": "https://github.com/rstudio/rmarkdown, https://pkgs.rstudio.com/rmarkdown/",
      "BugReports": "https://github.com/rstudio/rmarkdown/issues",
      "Depends": [
        "R (>= 3.0)"
      ],
      "Imports": [
        "bslib (>= 0.2.5.1)",
        "evaluate (>= 0.13)",
        "fontawesome (>= 0.5.0)",
        "htmltools (>= 0.5.1)",
        "jquerylib",
        "jsonlite",
        "knitr (>= 1.43)",
        "methods",
        "tinytex (>= 0.31)",
        "tools",
        "utils",
        "xfun (>= 0.36)",
        "yaml (>= 2.1.19)"
      ],
      "Suggests": [
        "digest",
        "dygraphs",
        "fs",
        "rsconnect",
        "downlit (>= 0.4.0)",
        "katex (>= 1.4.0)",
        "sass (>= 0.4.0)",
        "shiny (>= 1.6.0)",
        "testthat (>= 3.0.3)",
        "tibble",
        "vctrs",
        "cleanrmd",
        "withr (>= 2.4.2)",
        "xml2"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "rstudio/quillt, pkgdown",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org",
      "NeedsCompilation": "no",
      "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Andrew Dunning [ctb] (<https://orcid.org/0000-0003-0464-5036>), Atsushi Yasumoto [ctb, cph] (<https://orcid.org/0000-0002-8335-495X>, Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (<https://orcid.org/0000-0002-4958-2844>), Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>), Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>), Jeff Allen [ctb], JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
    "rmdformats": {
      "Package": "rmdformats",
      "Version": "1.0.4",
      "Source": "Repository",
      "Maintainer": "Julien Barnier <julien.barnier@cnrs.fr>",
      "Authors@R": "c(person(\"Julien\", \"Barnier\", email=\"julien.barnier@cnrs.fr\", role=c(\"aut\",\"cre\")))",
      "Date": "2022-05-10",
      "License": "GPL (>= 2)",
      "Encoding": "UTF-8",
      "Title": "HTML Output Formats and Templates for 'rmarkdown' Documents",
      "Description": "HTML formats and templates for 'rmarkdown' documents, with some extra features such as automatic table of contents, lightboxed figures, dynamic crosstab helper.",
      "Imports": [
        "knitr",
        "rmarkdown",
        "bookdown",
        "htmltools"
      ],
      "Suggests": [
        "questionr",
        "DT",
        "palmerpenguins",
        "ggplot2"
      ],
      "URL": "https://github.com/juba/rmdformats",
      "BugReports": "https://github.com/juba/rmdformats/issues",
      "RoxygenNote": "7.1.2",
      "NeedsCompilation": "no",
      "Author": "Julien Barnier [aut, cre]",
      "Repository": "CRAN"
    },
    "robustbase": {
      "Package": "robustbase",
      "Version": "0.99-4-1",
      "Source": "Repository",
      "VersionNote": "Released 0.99-4 on 2024-08-19, 0.99-3 on 2024-07-01 and 0.99-2 on 2024-01-27 to CRAN",
      "Date": "2024-09-24",
      "Title": "Basic Robust Statistics",
      "Authors@R": "c(person(\"Martin\",\"Maechler\", role=c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(\"Peter\", \"Rousseeuw\", role=\"ctb\", comment = \"Qn and Sn\") , person(\"Christophe\", \"Croux\", role=\"ctb\", comment = \"Qn and Sn\") , person(\"Valentin\", \"Todorov\", role = \"aut\", email = \"valentin.todorov@chello.at\", comment = \"most robust Cov\") , person(\"Andreas\", \"Ruckstuhl\", role = \"aut\", email = \"andreas.ruckstuhl@zhaw.ch\", comment = \"nlrob, anova, glmrob\") , person(\"Matias\", \"Salibian-Barrera\", role = \"aut\", email = \"matias@stat.ubc.ca\", comment = \"lmrob orig.\") , person(\"Tobias\", \"Verbeke\", role = c(\"ctb\",\"fnd\"), email = \"tobias.verbeke@openanalytics.eu\", comment = \"mc, adjbox\") , person(\"Manuel\", \"Koller\", role = \"aut\", email = \"koller.manuel@gmail.com\", comment = \"mc, lmrob, psi-func.\") , person(c(\"Eduardo\", \"L. T.\"), \"Conceicao\", role = \"aut\", email = \"mail@eduardoconceicao.org\", comment = \"MM-, tau-, CM-, and MTL- nlrob\") , person(\"Maria\", \"Anna di Palma\", role = \"ctb\", comment = \"initial version of Comedian\") )",
      "URL": "https://robustbase.R-forge.R-project.org/, https://R-forge.R-project.org/R/?group_id=59, https://R-forge.R-project.org/scm/viewvc.php/pkg/robustbase/?root=robustbase, svn://svn.r-forge.r-project.org/svnroot/robustbase/pkg/robustbase",
      "BugReports": "https://R-forge.R-project.org/tracker/?atid=302&group_id=59",
      "Description": "\"Essential\" Robust Statistics. Tools allowing to analyze data with robust methods.  This includes regression methodology including model selections and multivariate statistics where we strive to cover the book \"Robust Statistics, Theory and Methods\" by 'Maronna, Martin and Yohai'; Wiley 2006.",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "stats",
        "graphics",
        "utils",
        "methods",
        "DEoptimR"
      ],
      "Suggests": [
        "grid",
        "MASS",
        "lattice",
        "boot",
        "cluster",
        "Matrix",
        "robust",
        "fit.models",
        "MPV",
        "xtable",
        "ggplot2",
        "GGally",
        "RColorBrewer",
        "reshape2",
        "sfsmisc",
        "catdata",
        "doParallel",
        "foreach",
        "skewt"
      ],
      "SuggestsNote": "mostly only because of vignette graphics and simulation",
      "Enhances": [
        "robustX",
        "rrcov",
        "matrixStats",
        "quantreg",
        "Hmisc"
      ],
      "EnhancesNote": "linked to in man/*.Rd",
      "LazyData": "yes",
      "NeedsCompilation": "yes",
      "License": "GPL (>= 2)",
      "Author": "Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Peter Rousseeuw [ctb] (Qn and Sn), Christophe Croux [ctb] (Qn and Sn), Valentin Todorov [aut] (most robust Cov), Andreas Ruckstuhl [aut] (nlrob, anova, glmrob), Matias Salibian-Barrera [aut] (lmrob orig.), Tobias Verbeke [ctb, fnd] (mc, adjbox), Manuel Koller [aut] (mc, lmrob, psi-func.), Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob), Maria Anna di Palma [ctb] (initial version of Comedian)",
      "Maintainer": "Martin Maechler <maechler@stat.math.ethz.ch>",
      "Repository": "CRAN"
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    "rprojroot": {
      "Package": "rprojroot",
      "Version": "2.0.4",
      "Source": "Repository",
      "Title": "Finding Files in Project Subdirectories",
      "Authors@R": "person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\"))",
      "Description": "Robust, reliable and flexible paths to files below a project root. The 'root' of a project is defined as a directory that matches a certain criterion, e.g., it contains a certain regular file.",
      "License": "MIT + file LICENSE",
      "URL": "https://rprojroot.r-lib.org/, https://github.com/r-lib/rprojroot",
      "BugReports": "https://github.com/r-lib/rprojroot/issues",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Suggests": [
        "covr",
        "knitr",
        "lifecycle",
        "mockr",
        "rlang",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "withr"
      ],
      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>)",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
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      "Package": "rsvd",
      "Version": "1.0.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Randomized Singular Value Decomposition",
      "Date": "2021-04-11",
      "Authors@R": "c(person(\"N. Benjamin\", \"Erichson\", role = c(\"aut\", \"cre\"), email = \"erichson@berkeley.edu\"))",
      "Author": "N. Benjamin Erichson [aut, cre]",
      "Maintainer": "N. Benjamin Erichson <erichson@berkeley.edu>",
      "Description": "Low-rank matrix decompositions are fundamental tools and widely used for data analysis, dimension reduction, and data compression. Classically, highly accurate  deterministic matrix algorithms are used for this task. However, the emergence of  large-scale data has severely challenged our computational ability to analyze big data.  The concept of randomness has been demonstrated as an effective strategy to quickly produce approximate answers to familiar problems such as the singular value decomposition (SVD).  The rsvd package provides several randomized matrix algorithms such as the randomized  singular value decomposition (rsvd), randomized principal component analysis (rpca),  randomized robust principal component analysis (rrpca), randomized interpolative  decomposition (rid), and the randomized CUR decomposition (rcur). In addition several plot  functions are provided.",
      "Depends": [
        "R (>= 4.0.0)"
      ],
      "Imports": [
        "Matrix"
      ],
      "License": "GPL (>= 3)",
      "LazyData": "TRUE",
      "LazyDataCompression": "xz",
      "URL": "https://github.com/erichson/rSVD",
      "BugReports": "https://github.com/erichson/rSVD/issues",
      "Suggests": [
        "ggplot2",
        "testthat"
      ],
      "RoxygenNote": "7.1.1",
      "NeedsCompilation": "no",
      "Encoding": "UTF-8",
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      "Package": "rtracklayer",
      "Version": "1.64.0",
      "Source": "Bioconductor",
      "Title": "R interface to genome annotation files and the UCSC genome browser",
      "Author": "Michael Lawrence, Vince Carey, Robert Gentleman",
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        "R (>= 3.5.0)",
        "methods",
        "GenomicRanges (>= 1.37.2)"
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        "S4Vectors (>= 0.23.18)",
        "IRanges (>= 2.13.13)",
        "XVector (>= 0.19.7)",
        "GenomeInfoDb (>= 1.15.2)",
        "Biostrings (>= 2.47.6)",
        "zlibbioc",
        "curl",
        "httr",
        "Rsamtools (>= 1.31.2)",
        "GenomicAlignments (>= 1.15.6)",
        "BiocIO",
        "tools",
        "restfulr (>= 0.0.13)"
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        "BSgenome (>= 1.33.4)",
        "humanStemCell",
        "microRNA (>= 1.1.1)",
        "genefilter",
        "limma",
        "org.Hs.eg.db",
        "hgu133plus2.db",
        "GenomicFeatures",
        "BSgenome.Hsapiens.UCSC.hg19",
        "TxDb.Hsapiens.UCSC.hg19.knownGene",
        "RUnit"
      ],
      "LinkingTo": [
        "S4Vectors",
        "IRanges",
        "XVector"
      ],
      "Description": "Extensible framework for interacting with multiple genome  browsers (currently UCSC built-in) and manipulating  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.",
      "Maintainer": "Michael Lawrence <michafla@gene.com>",
      "License": "Artistic-2.0 + file LICENSE",
      "Collate": "io.R web.R ranges.R trackDb.R browser.R ucsc.R readGFF.R gff.R bed.R wig.R utils.R bigWig.R bigBed.R chain.R quickload.R trackhub.R twobit.R fasta.R tabix.R bam.R trackTable.R index.R test_rtracklayer_package.R ncbi.R igv.R zzz.R",
      "biocViews": "Annotation,Visualization,DataImport",
      "git_url": "https://git.bioconductor.org/packages/rtracklayer",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "ba889ee",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "yes"
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      "Package": "sandwich",
      "Version": "3.1-1",
      "Source": "Repository",
      "Date": "2024-09-16",
      "Title": "Robust Covariance Matrix Estimators",
      "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Thomas\", family = \"Lumley\", role = \"aut\", email = \"t.lumley@auckland.ac.nz\", comment = c(ORCID = \"0000-0003-4255-5437\")), person(given = \"Nathaniel\", family = \"Graham\", role = \"ctb\", email = \"npgraham1@gmail.com\", comment = c(ORCID = \"0009-0002-1215-5256\")), person(given = \"Susanne\", family = \"Koell\", role = \"ctb\"))",
      "Description": "Object-oriented software for model-robust covariance matrix estimators. Starting out from the basic  robust Eicker-Huber-White sandwich covariance methods include: heteroscedasticity-consistent (HC) covariances for cross-section data; heteroscedasticity- and autocorrelation-consistent (HAC) covariances for time series data (such as Andrews' kernel HAC, Newey-West, and WEAVE estimators); clustered covariances (one-way and multi-way); panel and panel-corrected covariances; outer-product-of-gradients covariances; and (clustered) bootstrap covariances. All methods are applicable to (generalized) linear model objects fitted by lm() and glm() but can also be adapted to other classes through S3 methods. Details can be found in Zeileis et al. (2020) <doi:10.18637/jss.v095.i01>, Zeileis (2004) <doi:10.18637/jss.v011.i10> and Zeileis (2006) <doi:10.18637/jss.v016.i09>.",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "stats",
        "utils",
        "zoo"
      ],
      "Suggests": [
        "AER",
        "car",
        "geepack",
        "lattice",
        "lme4",
        "lmtest",
        "MASS",
        "multiwayvcov",
        "parallel",
        "pcse",
        "plm",
        "pscl",
        "scatterplot3d",
        "stats4",
        "strucchange",
        "survival"
      ],
      "License": "GPL-2 | GPL-3",
      "URL": "https://sandwich.R-Forge.R-project.org/",
      "BugReports": "https://sandwich.R-Forge.R-project.org/contact.html",
      "NeedsCompilation": "no",
      "Author": "Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>), Thomas Lumley [aut] (<https://orcid.org/0000-0003-4255-5437>), Nathaniel Graham [ctb] (<https://orcid.org/0009-0002-1215-5256>), Susanne Koell [ctb]",
      "Maintainer": "Achim Zeileis <Achim.Zeileis@R-project.org>",
      "Repository": "CRAN"
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      "Package": "sass",
      "Version": "0.4.9",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Syntactically Awesome Style Sheets ('Sass')",
      "Description": "An 'SCSS' compiler, powered by the 'LibSass' library. With this, R developers can use variables, inheritance, and functions to generate dynamic style sheets. The package uses the 'Sass CSS' extension language, which is stable, powerful, and CSS compatible.",
      "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@rstudio.com\", \"aut\"), person(\"Timothy\", \"Mastny\", , \"tim.mastny@gmail.com\", \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Barret\", \"Schloerke\", , \"barret@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Carson\", \"Sievert\", , \"carson@rstudio.com\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Christophe\", \"Dervieux\", , \"cderv@rstudio.com\", c(\"ctb\"), comment = c(ORCID = \"0000-0003-4474-2498\")), person(family = \"RStudio\", role = c(\"cph\", \"fnd\")), person(family = \"Sass Open Source Foundation\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Greter\", \"Marcel\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Mifsud\", \"Michael\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Hampton\", \"Catlin\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Natalie\", \"Weizenbaum\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Chris\", \"Eppstein\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Adams\", \"Joseph\", role = c(\"ctb\", \"cph\"), comment = \"json.cpp\"), person(\"Trifunovic\", \"Nemanja\", role = c(\"ctb\", \"cph\"), comment = \"utf8.h\") )",
      "License": "MIT + file LICENSE",
      "URL": "https://rstudio.github.io/sass/, https://github.com/rstudio/sass",
      "BugReports": "https://github.com/rstudio/sass/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "SystemRequirements": "GNU make",
      "Imports": [
        "fs (>= 1.2.4)",
        "rlang (>= 0.4.10)",
        "htmltools (>= 0.5.1)",
        "R6",
        "rappdirs"
      ],
      "Suggests": [
        "testthat",
        "knitr",
        "rmarkdown",
        "withr",
        "shiny",
        "curl"
      ],
      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "NeedsCompilation": "yes",
      "Author": "Joe Cheng [aut], Timothy Mastny [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), RStudio [cph, fnd], Sass Open Source Foundation [ctb, cph] (LibSass library), Greter Marcel [ctb, cph] (LibSass library), Mifsud Michael [ctb, cph] (LibSass library), Hampton Catlin [ctb, cph] (LibSass library), Natalie Weizenbaum [ctb, cph] (LibSass library), Chris Eppstein [ctb, cph] (LibSass library), Adams Joseph [ctb, cph] (json.cpp), Trifunovic Nemanja [ctb, cph] (utf8.h)",
      "Maintainer": "Carson Sievert <carson@rstudio.com>",
      "Repository": "CRAN"
    },
    "scDblFinder": {
      "Package": "scDblFinder",
      "Version": "1.18.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "scDblFinder",
      "Authors@R": "c( person(\"Pierre-Luc\", \"Germain\", email=\"pierre-luc.germain@hest.ethz.ch\", role=c(\"cre\",\"aut\"), comment=c(ORCID=\"0000-0003-3418-4218\")), person(\"Aaron\", \"Lun\", email=\"infinite.monkeys.with.keyboards@gmail.com\", role=\"ctb\"))",
      "URL": "https://github.com/plger/scDblFinder, https://plger.github.io/scDblFinder/",
      "BugReports": "https://github.com/plger/scDblFinder/issues",
      "Description": "The scDblFinder package gathers various methods for the detection and  handling of doublets/multiplets in single-cell sequencing data (i.e.  multiple cells captured within the same droplet or reaction volume). It includes methods formerly found in the scran package, the new fast and comprehensive scDblFinder method, and a reimplementation of the Amulet detection method for single-cell ATAC-seq.",
      "License": "GPL-3 + file LICENSE",
      "Depends": [
        "R (>= 4.0)",
        "SingleCellExperiment"
      ],
      "Imports": [
        "igraph",
        "Matrix",
        "BiocGenerics",
        "BiocParallel",
        "BiocNeighbors",
        "BiocSingular",
        "S4Vectors",
        "SummarizedExperiment",
        "scran",
        "scater",
        "scuttle",
        "bluster",
        "methods",
        "DelayedArray",
        "xgboost",
        "stats",
        "utils",
        "MASS",
        "IRanges",
        "GenomicRanges",
        "GenomeInfoDb",
        "Rsamtools",
        "rtracklayer"
      ],
      "Suggests": [
        "BiocStyle",
        "knitr",
        "rmarkdown",
        "testthat",
        "scRNAseq",
        "circlize",
        "ComplexHeatmap",
        "ggplot2",
        "dplyr",
        "viridisLite",
        "mbkmeans"
      ],
      "VignetteBuilder": "knitr",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "biocViews": "Preprocessing, SingleCell, RNASeq, ATACSeq",
      "git_url": "https://git.bioconductor.org/packages/scDblFinder",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "226a100",
      "git_last_commit_date": "2024-04-30",
      "Repository": "Bioconductor 3.19",
      "NeedsCompilation": "no",
      "Author": "Pierre-Luc Germain [cre, aut] (<https://orcid.org/0000-0003-3418-4218>), Aaron Lun [ctb]",
      "Maintainer": "Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>"
    },
    "scRepertoire": {
      "Package": "scRepertoire",
      "Version": "2.2.1",
      "Source": "GitHub",
      "Title": "A toolkit for single-cell immune receptor profiling",
      "Authors@R": "c( person(given = \"Nick\", family = \"Borcherding\", role = c(\"aut\", \"cre\"), email = \"ncborch@gmail.com\"),  person(given = \"Qile\", family = \"Yang\", role = c(\"aut\"), email = \"qile.yang@berkeley.edu\"),  person(given = \"Ksenia\", family = \"Safina\", role = c(\"aut\"), email = \"safina@broadinstitute.org\"))",
      "Description": "scRepertoire is a toolkit for processing and analyzing single-cell T-cell receptor (TCR) and immunoglobulin (Ig). The scRepertoire framework supports use of 10x, AIRR, BD, MiXCR, Omniscope, TRUST4, and WAT3R single-cell formats. The functionality includes basic clonal analyses, repertoire summaries, distance-based clustering and interaction with the popular Seurat and SingleCellExperiment/Bioconductor R workflows.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "LazyData": "true",
      "RoxygenNote": "7.3.2",
      "biocViews": "Software, ImmunoOncology, SingleCell, Classification, Annotation, Sequencing",
      "Depends": [
        "ggplot2",
        "R (>= 4.0)"
      ],
      "Imports": [
        "assertthat",
        "cubature",
        "dplyr",
        "evmix",
        "ggalluvial",
        "ggdendro",
        "ggraph",
        "grDevices",
        "igraph",
        "iNEXT",
        "methods",
        "plyr",
        "quantreg",
        "Rcpp",
        "reshape2",
        "rjson",
        "rlang",
        "S4Vectors",
        "SeuratObject",
        "SingleCellExperiment",
        "stats",
        "stringr",
        "stringdist",
        "SummarizedExperiment",
        "tidygraph",
        "truncdist",
        "utils",
        "VGAM",
        "hash",
        "purrr",
        "lifecycle"
      ],
      "Suggests": [
        "BiocManager",
        "BiocStyle",
        "circlize",
        "knitr",
        "rmarkdown",
        "scales",
        "scater",
        "Seurat",
        "spelling",
        "testthat (>= 3.0.0)",
        "vdiffr"
      ],
      "VignetteBuilder": "knitr",
      "Config/testthat/edition": "3",
      "Language": "en-US",
      "LinkingTo": [
        "Rcpp"
      ],
      "URL": "https://www.borch.dev/uploads/scRepertoire/",
      "BugReports": "https://github.com/ncborcherding/scRepertoire/issues",
      "Roxygen": "list(markdown = TRUE)",
      "Author": "Nick Borcherding [aut, cre], Qile Yang [aut], Ksenia Safina [aut]",
      "Maintainer": "Nick Borcherding <ncborch@gmail.com>",
      "RemoteType": "github",
      "RemoteHost": "api.github.com",
      "RemoteUsername": "ncborcherding",
      "RemoteRepo": "scRepertoire",
      "RemoteRef": "master",
      "RemoteSha": "b1fe3f1bc5412e6b552597ca55b9ec4b29560ac1"
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      "Package": "scales",
      "Version": "1.3.0",
      "Source": "Repository",
      "Title": "Scale Functions for Visualization",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.",
      "License": "MIT + file LICENSE",
      "URL": "https://scales.r-lib.org, https://github.com/r-lib/scales",
      "BugReports": "https://github.com/r-lib/scales/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli",
        "farver (>= 2.0.3)",
        "glue",
        "labeling",
        "lifecycle",
        "munsell (>= 0.5)",
        "R6",
        "RColorBrewer",
        "rlang (>= 1.0.0)",
        "viridisLite"
      ],
      "Suggests": [
        "bit64",
        "covr",
        "dichromat",
        "ggplot2",
        "hms (>= 0.5.0)",
        "stringi",
        "testthat (>= 3.0.0)"
      ],
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "LazyLoad": "yes",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
      "Repository": "CRAN"
    },
    "scater": {
      "Package": "scater",
      "Version": "1.32.1",
      "Source": "Bioconductor",
      "Type": "Package",
      "Authors@R": "c( person(\"Davis\", \"McCarthy\", role=c(\"aut\"), email=\"davis@ebi.ac.uk\"), person(\"Kieran\", \"Campbell\", role=c(\"aut\"), email=\"kieran.campbell@sjc.ox.ac.uk\"), person(\"Aaron\", \"Lun\", role = c(\"aut\", \"ctb\"), email=\"infinite.monkeys.with.keyboards@gmail.com\"), person(\"Quin\", \"Wills\", role=c(\"aut\"), email=\"qilin@quinwills.net\"), person(\"Vladimir\", \"Kiselev\", role=c(\"ctb\"), email=\"vk6@sanger.ac.uk\"), person(\"Felix G.M.\", \"Ernst\", role=c(\"ctb\"), email=\"felix.gm.ernst@outlook.com\"), person(\"Alan\", \"O'Callaghan\", role=c(\"ctb\", \"cre\"), email=\"alan.ocallaghan@outlook.com\"), person(\"Yun\", \"Peng\", role=c(\"ctb\"), email=\"yunyunp96@gmail.com\"), person(\"Leo\", \"Lahti\", role=c(\"ctb\"), email=\"leo.lahti@utu.fi\", comment = c(ORCID = \"0000-0001-5537-637X\")) )",
      "Date": "2024-07-18",
      "License": "GPL-3",
      "Title": "Single-Cell Analysis Toolkit for Gene Expression Data in R",
      "Description": "A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.",
      "Depends": [
        "SingleCellExperiment",
        "scuttle",
        "ggplot2"
      ],
      "Imports": [
        "stats",
        "utils",
        "methods",
        "Matrix",
        "BiocGenerics",
        "S4Vectors",
        "SummarizedExperiment",
        "DelayedArray",
        "MatrixGenerics",
        "beachmat",
        "BiocNeighbors",
        "BiocSingular",
        "BiocParallel",
        "rlang",
        "ggbeeswarm",
        "viridis",
        "Rtsne",
        "RColorBrewer",
        "RcppML",
        "uwot",
        "pheatmap",
        "ggrepel",
        "ggrastr"
      ],
      "Suggests": [
        "BiocStyle",
        "snifter",
        "densvis",
        "cowplot",
        "biomaRt",
        "knitr",
        "scRNAseq",
        "robustbase",
        "rmarkdown",
        "testthat",
        "Biobase",
        "scattermore"
      ],
      "VignetteBuilder": "knitr",
      "biocViews": "ImmunoOncology, SingleCell, RNASeq, QualityControl, Preprocessing, Normalization, Visualization, DimensionReduction, Transcriptomics, GeneExpression, Sequencing, Software, DataImport, DataRepresentation, Infrastructure, Coverage",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "URL": "http://bioconductor.org/packages/scater/",
      "BugReports": "https://support.bioconductor.org/",
      "git_url": "https://git.bioconductor.org/packages/scater",
      "git_branch": "RELEASE_3_19",
      "git_last_commit": "0ad51ab",
      "git_last_commit_date": "2024-07-18",
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      "Date": "2024-03-05",
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      "Description": "Makes it incredibly easy to build interactive web applications with R. Automatic \"reactive\" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.",
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      "Author": "Winston Chang [aut, cre] (<https://orcid.org/0000-0002-1576-2126>), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut] (<https://orcid.org/0000-0002-4958-2844>), Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)",
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      "Author": "James Balamuta [aut, cre, cph] (<https://orcid.org/0000-0003-2826-8458>), Thijs van den Berg [aut, cph], Ralf Stubner [ctb]",
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      "Description": "Build and manipulate probability distributions of the skew-normal  family and some related ones, notably the skew-t and the SUN families.  For the skew-normal and the skew-t distributions, statistical methods are  provided for data fitting and model diagnostics, in the univariate and the  multivariate case.",
      "License": "GPL-2 | GPL-3",
      "URL": "http://azzalini.stat.unipd.it/SN/",
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      "Maintainer": "Luke Tierney <luke-tierney@uiowa.edu>",
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      "URL": "https://github.com/edzer/sp/ https://edzer.github.io/sp/",
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      "Collate": "bpy.colors.R AAA.R Class-CRS.R CRS-methods.R Class-Spatial.R Spatial-methods.R projected.R Class-SpatialPoints.R SpatialPoints-methods.R Class-SpatialPointsDataFrame.R SpatialPointsDataFrame-methods.R Class-SpatialMultiPoints.R SpatialMultiPoints-methods.R Class-SpatialMultiPointsDataFrame.R SpatialMultiPointsDataFrame-methods.R Class-GridTopology.R Class-SpatialGrid.R Class-SpatialGridDataFrame.R Class-SpatialLines.R SpatialLines-methods.R Class-SpatialLinesDataFrame.R SpatialLinesDataFrame-methods.R Class-SpatialPolygons.R Class-SpatialPolygonsDataFrame.R SpatialPolygons-methods.R SpatialPolygonsDataFrame-methods.R GridTopology-methods.R SpatialGrid-methods.R SpatialGridDataFrame-methods.R SpatialPolygons-internals.R point.in.polygon.R SpatialPolygons-displayMethods.R zerodist.R image.R stack.R bubble.R mapasp.R select.spatial.R gridded.R asciigrid.R spplot.R over.R spsample.R recenter.R dms.R gridlines.R spdists.R rbind.R flipSGDF.R chfids.R loadmeuse.R compassRose.R surfaceArea.R spOptions.R subset.R disaggregate.R sp_spat1.R merge.R aggregate.R elide.R sp2Mondrian.R",
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      "Author": "Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb], Robert Hijmans [ctb], Michael Sumner [ctb], Don MacQueen [ctb], Jim Lemon [ctb], Finn Lindgren [ctb], Josh O'Brien [ctb], Joseph O'Rourke [ctb], Patrick Hausmann [ctb]",
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      "Description": "cell type identification and cell type-specific differential expression for spatial transcriptomics",
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      "Title": "SPArse Matrix",
      "Date": "2024-10-03",
      "Authors@R": "c(person(\"Reinhard\", \"Furrer\", role = c(\"aut\", \"cre\"), email = \"reinhard.furrer@math.uzh.ch\", comment = c(ORCID = \"0000-0002-6319-2332\")), person(\"Florian\", \"Gerber\", role = c(\"aut\"), email = \"florian.gerber@math.uzh.ch\", comment = c(ORCID = \"0000-0001-8545-5263\")), person(\"Roman\", \"Flury\", role = c(\"aut\"), email = \"roman.flury@math.uzh.ch\", comment = c(ORCID = \"0000-0002-0349-8698\")), person(\"Daniel\", \"Gerber\", role = \"ctb\", email = \"daniel_gerber_2222@hotmail.com\"), person(\"Kaspar\", \"Moesinger\", role = \"ctb\", email = \"kaspar.moesinger@gmail.com\"), person(\"Annina\", \"Cincera\", email = \"annina.cincera@math.uzh.ch\", role = \"ctb\"), person(\"Youcef\", \"Saad\", role = \"ctb\", comment = \"SPARSEKIT http://www-users.cs.umn.edu/~saad/software/SPARSKIT/\"), person(c(\"Esmond\", \"G.\"), \"Ng\", role = \"ctb\", comment = \"Fortran Cholesky routines\"), person(c(\"Barry\", \"W.\"), \"Peyton\", role = \"ctb\", comment = \"Fortran Cholesky routines\"), person(c(\"Joseph\", \"W.H.\"), \"Liu\", role = \"ctb\", comment = \"Fortran Cholesky routines\"), person(c(\"Alan\", \"D.\"), \"George\", role = \"ctb\", comment = \"Fortran Cholesky routines\"), person(c(\"Lehoucq\", \"B.\"), \"Rich\", role = \"ctb\", comment = \"ARPACK\"), person(c(\"Maschhoff\"), \"Kristi\", role = \"ctb\", comment = \"ARPACK\"), person(c(\"Sorensen\", \"C.\"), \"Danny\", role = \"ctb\", comment = \"ARPACK\"), person(c(\"Yang\"), \"Chao\", role = \"ctb\", comment = \"ARPACK\"))",
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      ],
      "Imports": [
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      "Description": "Set of functions for sparse matrix algebra. Differences with other sparse matrix packages are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within G(M)RF. (4) and it is fast and scalable (with the extension package spam64). Documentation about 'spam' is provided by vignettes included in this package, see also Furrer and Sain (2010) <doi:10.18637/jss.v036.i10>; see 'citation(\"spam\")' for details.",
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      "License": "LGPL-2 | BSD_3_clause + file LICENSE",
      "URL": "https://www.math.uzh.ch/pages/spam/",
      "BugReports": "https://git.math.uzh.ch/reinhard.furrer/spam/-/issues",
      "NeedsCompilation": "yes",
      "Author": "Reinhard Furrer [aut, cre] (<https://orcid.org/0000-0002-6319-2332>), Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>), Roman Flury [aut] (<https://orcid.org/0000-0002-0349-8698>), Daniel Gerber [ctb], Kaspar Moesinger [ctb], Annina Cincera [ctb], Youcef Saad [ctb] (SPARSEKIT http://www-users.cs.umn.edu/~saad/software/SPARSKIT/), Esmond G. Ng [ctb] (Fortran Cholesky routines), Barry W. Peyton [ctb] (Fortran Cholesky routines), Joseph W.H. Liu [ctb] (Fortran Cholesky routines), Alan D. George [ctb] (Fortran Cholesky routines), Lehoucq B. Rich [ctb] (ARPACK), Maschhoff Kristi [ctb] (ARPACK), Sorensen C. Danny [ctb] (ARPACK), Yang Chao [ctb] (ARPACK)",
      "Maintainer": "Reinhard Furrer <reinhard.furrer@math.uzh.ch>",
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      "Version": "1.16.0",
      "Source": "Bioconductor",
      "Type": "Package",
      "Title": "Summary Statistics for Rows and Columns of Sparse Matrices",
      "Authors@R": "person(\"Constantin\", \"Ahlmann-Eltze\", email = \"artjom31415@googlemail.com\",  role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3762-068X\"))",
      "Description": "High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format.  This package is inspired by the matrixStats package by Henrik Bengtsson.",
      "License": "MIT + file LICENSE",
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      ],
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      "SystemRequirements": "C++11",
      "VignetteBuilder": "knitr",
      "URL": "https://github.com/const-ae/sparseMatrixStats",
      "BugReports": "https://github.com/const-ae/sparseMatrixStats/issues",
      "biocViews": "Infrastructure, Software, DataRepresentation",
      "git_url": "https://git.bioconductor.org/packages/sparseMatrixStats",
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      "Author": "Constantin Ahlmann-Eltze [aut, cre] (<https://orcid.org/0000-0002-3762-068X>)",
      "Maintainer": "Constantin Ahlmann-Eltze <artjom31415@googlemail.com>"
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    "spatstat.data": {
      "Package": "spatstat.data",
      "Version": "3.1-2",
      "Source": "Repository",
      "Date": "2024-06-21",
      "Title": "Datasets for 'spatstat' Family",
      "Authors@R": "c(person(\"Adrian\", \"Baddeley\",  role = c(\"aut\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\",  role = \"aut\", email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\",   \"Rubak\",  role = \"aut\", email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"W\", \"Aherne\", role=\"ctb\"), person(\"Freda\", \"Alexander\", role=\"ctb\"), person(\"Qi Wei\", \"Ang\", role=\"ctb\"), person(\"Sourav\", \"Banerjee\", role=\"ctb\"), person(\"Mark\", \"Berman\", role=\"ctb\"), person(\"R\", \"Bernhardt\", role=\"ctb\"), person(\"Thomas\", \"Berndtsen\", role=\"ctb\"), person(\"Andrew\", \"Bevan\", role=\"ctb\"), person(\"Jeffrey\", \"Betts\", role=\"ctb\"), person(\"Ray\", \"Cartwright\", role=\"ctb\"), person(\"Lucia\", \"Cobo Sanchez\", role=\"ctb\"), person(\"Richard\", \"Condit\", role=\"ctb\"), person(\"Francis\", \"Crick\", role=\"ctb\"), person(\"Marcelino\", \"de la Cruz Rot\", role=\"ctb\"), person(\"Jack\", \"Cuzick\", role=\"ctb\"), person(\"Tilman\", \"Davies\", role=\"ctb\"), person(\"Peter\", \"Diggle\", role=\"ctb\"), person(\"Michael\", \"Drinkwater\", role=\"ctb\"), person(\"Stephen\", \"Eglen\", role=\"ctb\"), person(\"Robert\", \"Edwards\", role=\"ctb\"), person(\"AE\", \"Esler\", role=\"ctb\"), person(\"Gregory\", \"Evans\", role=\"ctb\"), person(\"Bernard\", \"Fingleton\", role=\"ctb\"), person(\"Olivier\", \"Flores\", role=\"ctb\"), person(\"David\", \"Ford\", role=\"ctb\"), person(\"Robin\", \"Foster\", role=\"ctb\"), person(\"Janet\", \"Franklin\", role=\"ctb\"), person(\"Neba\", \"Funwi-Gabga\", role=\"ctb\"), person(\"DJ\", \"Gerrard\", role=\"ctb\"), person(\"Andy\", \"Green\", role=\"ctb\"), person(\"Tim\", \"Griffin\", role=\"ctb\"), person(\"Ute\", \"Hahn\", role=\"ctb\"), person(\"RD\", \"Harkness\", role=\"ctb\"), person(\"Arthur\", \"Hickman\", role=\"ctb\"), person(\"Stephen\", \"Hubbell\", role=\"ctb\"), person(\"Austin\", \"Hughes\", role=\"ctb\"), person(\"Jonathan\", \"Huntington\", role=\"ctb\"), person(\"MJ\", \"Hutchings\", role=\"ctb\"), person(\"Jackie\", \"Inwald\", role=\"ctb\"), person(\"Valerie\", \"Isham\", role=\"ctb\"), person(\"Aruna\", \"Jammalamadaka\", role=\"ctb\"), person(\"Carl\", \"Knox-Robinson\", role=\"ctb\"), person(\"Mahdieh\", \"Khanmohammadi\", role=\"ctb\"), person(\"Tero\", \"Kokkila\", role=\"ctb\"), person(\"Bas\", \"Kooijman\", role=\"ctb\"), person(\"Kenneth\", \"Kosik\", role=\"ctb\"), person(\"Peter\", \"Kovesi\", role=\"ctb\"), person(\"Lily\", \"Kozmian-Ledward\", role=\"ctb\"), person(\"Robert\", \"Lamb\", role=\"ctb\"), person(\"NA\", \"Laskurain\", role=\"ctb\"), person(\"George\", \"Leser\", role=\"ctb\"), person(\"Marie-Colette\", \"van Lieshout\", role=\"ctb\"), person(\"AF\", \"Mark\", role=\"ctb\"), person(\"Jorge\", \"Mateu\", role=\"ctb\"), person(\"Annikki\", \"Makela\", role=\"ctb\"), person(\"Enrique\", \"Miranda\", role=\"ctb\"), person(\"Nicoletta\", \"Nava\", role=\"ctb\"), person(\"M\", \"Numata\", role=\"ctb\"), person(\"Matti\", \"Nummelin\", role=\"ctb\"), person(\"Jens Randel\", \"Nyengaard\", role=\"ctb\"), person(\"Yosihiko\", \"Ogata\", role=\"ctb\"), person(\"Si\", \"Palmer\", role=\"ctb\"), person(\"Antti\", \"Penttinen\", role=\"ctb\"), person(\"Sandra\", \"Pereira\", role=\"ctb\"), person(\"Nicolas\", \"Picard\", role=\"ctb\"), person(\"William\", \"Platt\", role=\"ctb\"), person(\"Stephen\", \"Rathbun\", role=\"ctb\"), person(\"Brian\", \"Ripley\", role=\"ctb\"), person(\"Roger\", \"Sainsbury\", role=\"ctb\"), person(\"Dietrich\", \"Stoyan\", role=\"ctb\"), person(\"David\", \"Strauss\", role=\"ctb\"), person(\"L\", \"Strand\", role=\"ctb\"), person(\"Masaharu\", \"Tanemura\", role=\"ctb\"), person(\"Graham\", \"Upton\", role=\"ctb\"), person(\"Bill\", \"Venables\", role=\"ctb\"), person(\"Sasha\", \"Voss\", role=\"ctb\"), person(\"Rasmus\", \"Waagepetersen\", role=\"ctb\"), person(\"Keith\", \"Watkins\", role=\"ctb\"), person(\"H\", \"Wendrock\", role=\"ctb\") )",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "spatstat.utils (>= 3.0-5)",
        "Matrix"
      ],
      "Suggests": [
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        "spatstat.random",
        "spatstat.explore",
        "spatstat.model",
        "spatstat.linnet"
      ],
      "Description": "Contains all the datasets for the 'spatstat' family of packages.",
      "License": "GPL (>= 2)",
      "URL": "http://spatstat.org/",
      "LazyData": "true",
      "NeedsCompilation": "no",
      "ByteCompile": "true",
      "BugReports": "https://github.com/spatstat/spatstat.data/issues",
      "Author": "Adrian Baddeley [aut, cre] (<https://orcid.org/0000-0001-9499-8382>), Rolf Turner [aut] (<https://orcid.org/0000-0001-5521-5218>), Ege Rubak [aut] (<https://orcid.org/0000-0002-6675-533X>), W Aherne [ctb], Freda Alexander [ctb], Qi Wei Ang [ctb], Sourav Banerjee [ctb], Mark Berman [ctb], R Bernhardt [ctb], Thomas Berndtsen [ctb], Andrew Bevan [ctb], Jeffrey Betts [ctb], Ray Cartwright [ctb], Lucia Cobo Sanchez [ctb], Richard Condit [ctb], Francis Crick [ctb], Marcelino de la Cruz Rot [ctb], Jack Cuzick [ctb], Tilman Davies [ctb], Peter Diggle [ctb], Michael Drinkwater [ctb], Stephen Eglen [ctb], Robert Edwards [ctb], AE Esler [ctb], Gregory Evans [ctb], Bernard Fingleton [ctb], Olivier Flores [ctb], David Ford [ctb], Robin Foster [ctb], Janet Franklin [ctb], Neba Funwi-Gabga [ctb], DJ Gerrard [ctb], Andy Green [ctb], Tim Griffin [ctb], Ute Hahn [ctb], RD Harkness [ctb], Arthur Hickman [ctb], Stephen Hubbell [ctb], Austin Hughes [ctb], Jonathan Huntington [ctb], MJ Hutchings [ctb], Jackie Inwald [ctb], Valerie Isham [ctb], Aruna Jammalamadaka [ctb], Carl Knox-Robinson [ctb], Mahdieh Khanmohammadi [ctb], Tero Kokkila [ctb], Bas Kooijman [ctb], Kenneth Kosik [ctb], Peter Kovesi [ctb], Lily Kozmian-Ledward [ctb], Robert Lamb [ctb], NA Laskurain [ctb], George Leser [ctb], Marie-Colette van Lieshout [ctb], AF Mark [ctb], Jorge Mateu [ctb], Annikki Makela [ctb], Enrique Miranda [ctb], Nicoletta Nava [ctb], M Numata [ctb], Matti Nummelin [ctb], Jens Randel Nyengaard [ctb], Yosihiko Ogata [ctb], Si Palmer [ctb], Antti Penttinen [ctb], Sandra Pereira [ctb], Nicolas Picard [ctb], William Platt [ctb], Stephen Rathbun [ctb], Brian Ripley [ctb], Roger Sainsbury [ctb], Dietrich Stoyan [ctb], David Strauss [ctb], L Strand [ctb], Masaharu Tanemura [ctb], Graham Upton [ctb], Bill Venables [ctb], Sasha Voss [ctb], Rasmus Waagepetersen [ctb], Keith Watkins [ctb], H Wendrock [ctb]",
      "Repository": "CRAN"
    },
    "spatstat.explore": {
      "Package": "spatstat.explore",
      "Version": "3.3-3",
      "Source": "Repository",
      "Date": "2024-10-22",
      "Title": "Exploratory Data Analysis for the 'spatstat' Family",
      "Authors@R": "c(person(\"Adrian\", \"Baddeley\",  role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\",  role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\",   \"Rubak\",  role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Kasper\", \"Klitgaard Berthelsen\", role = \"ctb\"), person(\"Warick\", \"Brown\", role = \"cph\"), person(\"Achmad\", \"Choiruddin\", role = \"ctb\"), person(\"Jean-Francois\", \"Coeurjolly\", role = \"ctb\"), person(\"Ottmar\", \"Cronie\", role = \"ctb\"), person(\"Tilman\", \"Davies\", role = c(\"ctb\", \"cph\")), person(\"Julian\", \"Gilbey\", role = \"ctb\"), person(\"Jonatan\", \"Gonzalez\", role = \"ctb\"), person(\"Yongtao\", \"Guan\", role = \"ctb\"), person(\"Ute\", \"Hahn\", role = \"ctb\"), person(\"Kassel\", \"Hingee\", role = c(\"ctb\", \"cph\")), person(\"Abdollah\", \"Jalilian\",  role = \"ctb\"), person(\"Frederic\", \"Lavancier\", role = \"ctb\"), person(\"Marie-Colette\", \"van Lieshout\", role = c(\"ctb\", \"cph\")), person(\"Greg\", \"McSwiggan\", role = \"ctb\"), person(\"Robin K\", \"Milne\", role = \"cph\"), person(\"Tuomas\", \"Rajala\", role = \"ctb\"), person(\"Suman\", \"Rakshit\", role = c(\"ctb\", \"cph\")), person(\"Dominic\", \"Schuhmacher\", role = \"ctb\"), person(\"Rasmus\", \"Plenge Waagepetersen\", role = \"ctb\"), person(\"Hangsheng\", \"Wang\", role = \"ctb\"))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)",
        "spatstat.data (>= 3.1-2)",
        "spatstat.univar (>= 3.0-0)",
        "spatstat.geom (>= 3.3-2)",
        "spatstat.random (>= 3.3-1)",
        "stats",
        "graphics",
        "grDevices",
        "utils",
        "methods",
        "nlme"
      ],
      "Imports": [
        "spatstat.utils (>= 3.1-0)",
        "spatstat.sparse (>= 3.1-0)",
        "goftest (>= 1.2-2)",
        "Matrix",
        "abind"
      ],
      "Suggests": [
        "sm",
        "gsl",
        "locfit",
        "spatial",
        "fftwtools (>= 0.9-8)",
        "spatstat.linnet (>= 3.2-1)",
        "spatstat.model (>= 3.3-1)",
        "spatstat (>= 3.1-1)"
      ],
      "Description": "Functionality for exploratory data analysis and nonparametric analysis of spatial data, mainly spatial point patterns, in the 'spatstat' family of packages. (Excludes analysis of spatial data on a linear network, which is covered by the separate package 'spatstat.linnet'.) Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.",
      "License": "GPL (>= 2)",
      "URL": "http://spatstat.org/",
      "NeedsCompilation": "yes",
      "ByteCompile": "true",
      "BugReports": "https://github.com/spatstat/spatstat.explore/issues",
      "Author": "Adrian Baddeley [aut, cre, cph] (<https://orcid.org/0000-0001-9499-8382>), Rolf Turner [aut, cph] (<https://orcid.org/0000-0001-5521-5218>), Ege Rubak [aut, cph] (<https://orcid.org/0000-0002-6675-533X>), Kasper Klitgaard Berthelsen [ctb], Warick Brown [cph], Achmad Choiruddin [ctb], Jean-Francois Coeurjolly [ctb], Ottmar Cronie [ctb], Tilman Davies [ctb, cph], Julian Gilbey [ctb], Jonatan Gonzalez [ctb], Yongtao Guan [ctb], Ute Hahn [ctb], Kassel Hingee [ctb, cph], Abdollah Jalilian [ctb], Frederic Lavancier [ctb], Marie-Colette van Lieshout [ctb, cph], Greg McSwiggan [ctb], Robin K Milne [cph], Tuomas Rajala [ctb], Suman Rakshit [ctb, cph], Dominic Schuhmacher [ctb], Rasmus Plenge Waagepetersen [ctb], Hangsheng Wang [ctb]",
      "Repository": "CRAN"
    },
    "spatstat.geom": {
      "Package": "spatstat.geom",
      "Version": "3.3-3",
      "Source": "Repository",
      "Date": "2024-09-18",
      "Title": "Geometrical Functionality of the 'spatstat' Family",
      "Authors@R": "c(person(\"Adrian\", \"Baddeley\",  role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\",  role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\",   \"Rubak\",  role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Tilman\",    \"Davies\",        role = \"ctb\"), person(\"Ute\",       \"Hahn\",          role = \"ctb\"), person(\"Abdollah\",  \"Jalilian\",      role = \"ctb\"), person(\"Greg\",      \"McSwiggan\",     role = c(\"ctb\", \"cph\")), person(\"Sebastian\", \"Meyer\",         role = c(\"ctb\", \"cph\")), person(\"Jens\",      \"Oehlschlaegel\", role = c(\"ctb\", \"cph\")), person(\"Suman\",     \"Rakshit\",       role = \"ctb\"), person(\"Dominic\",   \"Schuhmacher\",   role = \"ctb\"), person(\"Rasmus\",    \"Waagepetersen\", role = \"ctb\"))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)",
        "spatstat.data (>= 3.1)",
        "spatstat.univar (>= 3.0-0)",
        "stats",
        "graphics",
        "grDevices",
        "utils",
        "methods"
      ],
      "Imports": [
        "spatstat.utils (>= 3.1-0)",
        "deldir (>= 1.0-2)",
        "polyclip (>= 1.10-0)"
      ],
      "Suggests": [
        "spatstat.random",
        "spatstat.explore",
        "spatstat.model",
        "spatstat.linnet",
        "spatial",
        "fftwtools (>= 0.9-8)",
        "spatstat (>= 3.0)"
      ],
      "Description": "Defines spatial data types and supports geometrical operations on them. Data types include point patterns, windows (domains), pixel images, line segment patterns, tessellations and hyperframes. Capabilities include creation and manipulation of data (using command line or graphical interaction), plotting, geometrical operations (rotation, shift, rescale, affine transformation), convex hull, discretisation and pixellation, Dirichlet tessellation, Delaunay triangulation, pairwise distances, nearest-neighbour distances, distance transform, morphological operations (erosion, dilation, closing, opening), quadrat counting, geometrical measurement, geometrical covariance, colour maps, calculus on spatial domains, Gaussian blur, level sets of images, transects of images, intersections between objects, minimum distance matching. (Excludes spatial data on a network, which are supported by the package 'spatstat.linnet'.)",
      "License": "GPL (>= 2)",
      "URL": "http://spatstat.org/",
      "NeedsCompilation": "yes",
      "ByteCompile": "true",
      "BugReports": "https://github.com/spatstat/spatstat.geom/issues",
      "Author": "Adrian Baddeley [aut, cre, cph] (<https://orcid.org/0000-0001-9499-8382>), Rolf Turner [aut, cph] (<https://orcid.org/0000-0001-5521-5218>), Ege Rubak [aut, cph] (<https://orcid.org/0000-0002-6675-533X>), Tilman Davies [ctb], Ute Hahn [ctb], Abdollah Jalilian [ctb], Greg McSwiggan [ctb, cph], Sebastian Meyer [ctb, cph], Jens Oehlschlaegel [ctb, cph], Suman Rakshit [ctb], Dominic Schuhmacher [ctb], Rasmus Waagepetersen [ctb]",
      "Repository": "CRAN"
    },
    "spatstat.random": {
      "Package": "spatstat.random",
      "Version": "3.3-2",
      "Source": "Repository",
      "Date": "2024-09-18",
      "Title": "Random Generation Functionality for the 'spatstat' Family",
      "Authors@R": "c(person(\"Adrian\", \"Baddeley\",  role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\",  role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\",   \"Rubak\",  role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Tilman\", \"Davies\", role = c(\"aut\", \"cph\"), comment=c(ORCID=\"0000-0003-0565-1825\")), person(\"Kasper\", \"Klitgaard Berthelsen\", role = c(\"ctb\", \"cph\")), person(\"David\", \"Bryant\", role = c(\"ctb\", \"cph\")), person(\"Ya-Mei\", \"Chang\", role = c(\"ctb\", \"cph\"), email = \"yamei628@gmail.com\"), person(\"Ute\", \"Hahn\", role = \"ctb\"), person(\"Abdollah\", \"Jalilian\",  role = \"ctb\"), person(\"Dominic\", \"Schuhmacher\", role = c(\"ctb\", \"cph\")), person(\"Rasmus\", \"Plenge Waagepetersen\", role = c(\"ctb\", \"cph\")))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)",
        "spatstat.data (>= 3.1)",
        "spatstat.univar (>= 3.0-0)",
        "spatstat.geom (>= 3.3-0)",
        "stats",
        "utils",
        "methods",
        "grDevices"
      ],
      "Imports": [
        "spatstat.utils (>= 3.1-0)"
      ],
      "Suggests": [
        "spatial",
        "spatstat.linnet (>= 3.1-5)",
        "spatstat.explore",
        "spatstat.model",
        "spatstat (>= 3.0)",
        "gsl"
      ],
      "Description": "Functionality for random generation of spatial data in the 'spatstat' family of packages. Generates random spatial patterns of points according to many simple rules (complete spatial randomness, Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns (thinning, random shift, jittering),  simulated realisations of random point processes including simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes (using direct, Brix-Kendall, or hybrid algorithms), log-Gaussian Cox processes, product shot noise cluster processes and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm, alternating Gibbs sampler, or coupling-from-the-past perfect simulation). Also generates random spatial patterns of line segments, random tessellations, and random images (random noise, random mosaics). Excludes random generation on a linear network, which is covered by the separate package 'spatstat.linnet'.",
      "License": "GPL (>= 2)",
      "URL": "http://spatstat.org/",
      "NeedsCompilation": "yes",
      "ByteCompile": "true",
      "BugReports": "https://github.com/spatstat/spatstat.random/issues",
      "Author": "Adrian Baddeley [aut, cre, cph] (<https://orcid.org/0000-0001-9499-8382>), Rolf Turner [aut, cph] (<https://orcid.org/0000-0001-5521-5218>), Ege Rubak [aut, cph] (<https://orcid.org/0000-0002-6675-533X>), Tilman Davies [aut, cph] (<https://orcid.org/0000-0003-0565-1825>), Kasper Klitgaard Berthelsen [ctb, cph], David Bryant [ctb, cph], Ya-Mei Chang [ctb, cph], Ute Hahn [ctb], Abdollah Jalilian [ctb], Dominic Schuhmacher [ctb, cph], Rasmus Plenge Waagepetersen [ctb, cph]",
      "Repository": "CRAN"
    },
    "spatstat.sparse": {
      "Package": "spatstat.sparse",
      "Version": "3.1-0",
      "Source": "Repository",
      "Date": "2024-06-21",
      "Title": "Sparse Three-Dimensional Arrays and Linear Algebra Utilities",
      "Authors@R": "c(person(\"Adrian\", \"Baddeley\",  role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\",  role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\",   \"Rubak\",  role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)",
        "stats",
        "utils",
        "methods",
        "Matrix",
        "abind",
        "tensor"
      ],
      "Imports": [
        "spatstat.utils (>= 3.0-5)"
      ],
      "Description": "Defines sparse three-dimensional arrays and supports standard operations on them. The package also includes utility functions for matrix calculations that are common in statistics, such as quadratic forms.",
      "License": "GPL (>= 2)",
      "URL": "http://spatstat.org/",
      "NeedsCompilation": "yes",
      "ByteCompile": "true",
      "BugReports": "https://github.com/spatstat/spatstat.sparse/issues",
      "Author": "Adrian Baddeley [aut, cre, cph] (<https://orcid.org/0000-0001-9499-8382>), Rolf Turner [aut, cph] (<https://orcid.org/0000-0001-5521-5218>), Ege Rubak [aut, cph] (<https://orcid.org/0000-0002-6675-533X>)",
      "Repository": "CRAN"
    },
    "spatstat.univar": {
      "Package": "spatstat.univar",
      "Version": "3.1-1",
      "Source": "Repository",
      "Date": "2024-11-05",
      "Title": "One-Dimensional Probability Distribution Support for the 'spatstat' Family",
      "Authors@R": "c(person(\"Adrian\", \"Baddeley\",  role = c(\"aut\", \"cre\", \"cph\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(c(\"Tilman\", \"M.\"), \"Davies\", role = c(\"aut\", \"ctb\", \"cph\"), email = \"Tilman.Davies@otago.ac.nz\", comment = c(ORCID=\"0000-0003-0565-1825\")), person(c(\"Martin\", \"L.\"), \"Hazelton\", role = c(\"aut\", \"ctb\", \"cph\"), email = \"Martin.Hazelton@otago.ac.nz\", comment = c(ORCID=\"0000-0001-7831-725X\")), person(\"Ege\",   \"Rubak\",  role = c(\"aut\", \"cph\"), email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")), person(\"Rolf\", \"Turner\",  role = c(\"aut\", \"cph\"), email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Greg\", \"McSwiggan\", role = c(\"ctb\", \"cph\")))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)",
        "stats"
      ],
      "Imports": [
        "spatstat.utils (>= 3.1-1)"
      ],
      "Description": "Estimation of one-dimensional probability distributions including kernel density estimation, weighted empirical cumulative distribution functions, Kaplan-Meier and reduced-sample estimators for right-censored data, heat kernels, kernel properties, quantiles and integration.",
      "License": "GPL (>= 2)",
      "URL": "http://spatstat.org/",
      "NeedsCompilation": "yes",
      "ByteCompile": "true",
      "BugReports": "https://github.com/spatstat/spatstat.univar/issues",
      "Author": "Adrian Baddeley [aut, cre, cph] (<https://orcid.org/0000-0001-9499-8382>), Tilman M. Davies [aut, ctb, cph] (<https://orcid.org/0000-0003-0565-1825>), Martin L. Hazelton [aut, ctb, cph] (<https://orcid.org/0000-0001-7831-725X>), Ege Rubak [aut, cph] (<https://orcid.org/0000-0002-6675-533X>), Rolf Turner [aut, cph] (<https://orcid.org/0000-0001-5521-5218>), Greg McSwiggan [ctb, cph]",
      "Repository": "CRAN"
    },
    "spatstat.utils": {
      "Package": "spatstat.utils",
      "Version": "3.1-1",
      "Source": "Repository",
      "Date": "2024-11-02",
      "Title": "Utility Functions for 'spatstat'",
      "Authors@R": "c(person(\"Adrian\", \"Baddeley\",  role = c(\"aut\", \"cre\"), email = \"Adrian.Baddeley@curtin.edu.au\", comment = c(ORCID=\"0000-0001-9499-8382\")), person(\"Rolf\", \"Turner\",  role = \"aut\", email=\"rolfturner@posteo.net\", comment=c(ORCID=\"0000-0001-5521-5218\")), person(\"Ege\",   \"Rubak\",  role = \"aut\", email = \"rubak@math.aau.dk\", comment=c(ORCID=\"0000-0002-6675-533X\")))",
      "Maintainer": "Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>",
      "Depends": [
        "R (>= 3.5.0)",
        "stats",
        "graphics",
        "grDevices",
        "utils",
        "methods"
      ],
      "Suggests": [
        "spatstat.model"
      ],
      "Description": "Contains utility functions for the 'spatstat' family of packages which may also be useful for other purposes.",
      "License": "GPL (>= 2)",
      "URL": "http://spatstat.org/",
      "NeedsCompilation": "yes",
      "ByteCompile": "true",
      "BugReports": "https://github.com/spatstat/spatstat.utils/issues",
      "Author": "Adrian Baddeley [aut, cre] (<https://orcid.org/0000-0001-9499-8382>), Rolf Turner [aut] (<https://orcid.org/0000-0001-5521-5218>), Ege Rubak [aut] (<https://orcid.org/0000-0002-6675-533X>)",
      "Repository": "CRAN"
    },
    "statmod": {
      "Package": "statmod",
      "Version": "1.5.0",
      "Source": "Repository",
      "Date": "2022-12-28",
      "Title": "Statistical Modeling",
      "Author": "Gordon Smyth [cre, aut], Lizhong Chen [aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]",
      "Maintainer": "Gordon Smyth <smyth@wehi.edu.au>",
      "Depends": [
        "R (>= 3.0.0)"
      ],
      "Imports": [
        "stats",
        "graphics"
      ],
      "Suggests": [
        "MASS",
        "tweedie"
      ],
      "Description": "A collection of algorithms and functions to aid statistical modeling. Includes limiting dilution analysis (aka ELDA), growth curve comparisons, mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Also includes advanced generalized linear model functions including Tweedie and Digamma distributional families, secure convergence and exact distributional calculations for unit deviances.",
      "License": "GPL-2 | GPL-3",
      "NeedsCompilation": "yes",
      "Repository": "CRAN"
    },
    "stringdist": {
      "Package": "stringdist",
      "Version": "0.9.14",
      "Source": "Repository",
      "Maintainer": "Mark van der Loo <mark.vanderloo@gmail.com>",
      "License": "GPL-3",
      "Title": "Approximate String Matching, Fuzzy Text Search, and String Distance Functions",
      "Type": "Package",
      "LazyLoad": "yes",
      "Authors@R": "c( person(\"Mark\", \"van der Loo\", role=c(\"aut\",\"cre\") , email=\"mark.vanderloo@gmail.com\" , comment= c(ORCID=\"0000-0002-9807-4686\")) , person(\"Jan\", \"van der Laan\", role=\"ctb\") , person(\"R Core Team\",\"\"     , role=\"ctb\") , person(\"Nick\",\"Logan\"       , role=\"ctb\") , person(\"Chris\",\"Muir\"       , role=\"ctb\") , person(\"Johannes\", \"Gruber\" , role=\"ctb\") , person(\"Brian\",\"Ripley\"     , role=\"ctb\"))",
      "Description": "Implements an approximate string matching version of R's native 'match' function. Also offers fuzzy text search based on various string distance measures. Can calculate various string distances based on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An implementation of soundex is provided as well. Distances can be computed between character vectors while taking proper care of encoding or between integer vectors representing generic sequences. This package is built for speed and runs in parallel by using 'openMP'. An API for C or C++ is exposed as well. Reference: MPJ van der Loo (2014) <doi:10.32614/RJ-2014-011>.",
      "Depends": [
        "R (>= 2.15.3)"
      ],
      "URL": "https://github.com/markvanderloo/stringdist",
      "BugReports": "https://github.com/markvanderloo/stringdist/issues",
      "Suggests": [
        "tinytest"
      ],
      "Imports": [
        "parallel"
      ],
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "NeedsCompilation": "yes",
      "Author": "Mark van der Loo [aut, cre] (<https://orcid.org/0000-0002-9807-4686>), Jan van der Laan [ctb], R Core Team [ctb], Nick Logan [ctb], Chris Muir [ctb], Johannes Gruber [ctb], Brian Ripley [ctb]",
      "Repository": "CRAN"
    },
    "stringi": {
      "Package": "stringi",
      "Version": "1.8.4",
      "Source": "Repository",
      "Date": "2024-05-06",
      "Title": "Fast and Portable Character String Processing Facilities",
      "Description": "A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at <https://stringi.gagolewski.com/> and the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).",
      "URL": "https://stringi.gagolewski.com/, https://github.com/gagolews/stringi, https://icu.unicode.org/",
      "BugReports": "https://github.com/gagolews/stringi/issues",
      "SystemRequirements": "ICU4C (>= 61, optional)",
      "Type": "Package",
      "Depends": [
        "R (>= 3.4)"
      ],
      "Imports": [
        "tools",
        "utils",
        "stats"
      ],
      "Biarch": "TRUE",
      "License": "file LICENSE",
      "Author": "Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>), Bartek Tartanus [ctb], and others (stringi source code); Unicode, Inc. and others (ICU4C source code, Unicode Character Database)",
      "Maintainer": "Marek Gagolewski <marek@gagolewski.com>",
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "NeedsCompilation": "yes",
      "License_is_FOSS": "yes",
      "Repository": "CRAN"
    },
    "stringr": {
      "Package": "stringr",
      "Version": "1.5.1",
      "Source": "Repository",
      "Title": "Simple, Consistent Wrappers for Common String Operations",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with \"NA\"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.",
      "License": "MIT + file LICENSE",
      "URL": "https://stringr.tidyverse.org, https://github.com/tidyverse/stringr",
      "BugReports": "https://github.com/tidyverse/stringr/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "cli",
        "glue (>= 1.6.1)",
        "lifecycle (>= 1.0.3)",
        "magrittr",
        "rlang (>= 1.0.0)",
        "stringi (>= 1.5.3)",
        "vctrs (>= 0.4.0)"
      ],
      "Suggests": [
        "covr",
        "dplyr",
        "gt",
        "htmltools",
        "htmlwidgets",
        "knitr",
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      "Description": "Contains the core survival analysis routines, including definition of Surv objects,  Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.",
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      "NeedsCompilation": "yes",
      "Author": "Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009), Atkinson Elizabeth [ctb], Crowson Cynthia [ctb]",
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      "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"),  email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"ctb\"))",
      "Description": "Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. Supports clean interruption, timeout,  background tasks, and streaming STDIN / STDOUT / STDERR over binary or text  connections. Arguments on Windows automatically get encoded and quoted to work  on different locales.",
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      "URL": "https://jeroen.r-universe.dev/sys",
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      "Description": "Provides system native access to the font catalogue. As font handling varies between systems it is difficult to correctly locate installed fonts across different operating systems. The 'systemfonts' package provides bindings to the native libraries on Windows, macOS and Linux for finding font files that can then be used further by e.g. graphic devices. The main use is intended to be from compiled code but 'systemfonts' also provides access from R.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/systemfonts, https://systemfonts.r-lib.org",
      "BugReports": "https://github.com/r-lib/systemfonts/issues",
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      "Author": "Thomas Lin Pedersen [aut, cre] (<https://orcid.org/0000-0002-5147-4711>), Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>), Devon Govett [aut] (Author of font-manager), Posit, PBC [cph, fnd]",
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      "Author": "Jonathan Rougier <j.c.rougier@bristol.ac.uk>",
      "Maintainer": "Jonathan Rougier <j.c.rougier@bristol.ac.uk>",
      "Description": "The tensor product of two arrays is notionally an outer product of the arrays collapsed in specific extents by summing along the appropriate diagonals.",
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      "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library.  'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.",
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/r-lib/textshaping",
      "BugReports": "https://github.com/r-lib/textshaping/issues",
      "Depends": [
        "R (>= 3.2.0)"
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      "Imports": [
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        "systemfonts (>= 1.1.0)"
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      "Author": "Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Posit, PBC [cph, fnd]",
      "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
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      "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.",
      "License": "MIT + file LICENSE",
      "URL": "https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble",
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        "ggplot2",
        "here",
        "hms",
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        "lubridate",
        "mockr",
        "nycflights13",
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      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]",
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      "Source": "Repository",
      "Type": "Package",
      "Title": "A Tidy API for Graph Manipulation",
      "Authors@R": "person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\"))",
      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
      "Description": "A graph, while not \"tidy\" in itself, can be thought of as two tidy data frames describing node and edge data respectively. 'tidygraph' provides an approach to manipulate these two virtual data frames using the API defined in the 'dplyr' package, as well as provides tidy interfaces to a lot of common graph algorithms.",
      "License": "MIT + file LICENSE",
      "URL": "https://tidygraph.data-imaginist.com, https://github.com/thomasp85/tidygraph",
      "BugReports": "https://github.com/thomasp85/tidygraph/issues",
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      "Description": "Tools to help to create tidy data, where each column is a variable, each row is an observation, and each cell contains a single value.  'tidyr' contains tools for changing the shape (pivoting) and hierarchy (nesting and 'unnesting') of a dataset, turning deeply nested lists into rectangular data frames ('rectangling'), and extracting values out of string columns. It also includes tools for working with missing values (both implicit and explicit).",
      "License": "MIT + file LICENSE",
      "URL": "https://tidyr.tidyverse.org, https://github.com/tidyverse/tidyr",
      "BugReports": "https://github.com/tidyverse/tidyr/issues",
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        "stringr (>= 1.5.0)",
        "tibble (>= 2.1.1)",
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      "Author": "Hadley Wickham [aut, cre], Davis Vaughan [aut], Maximilian Girlich [aut], Kevin Ushey [ctb], Posit Software, PBC [cph, fnd]",
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      "Version": "1.2.1",
      "Source": "Repository",
      "Title": "Select from a Set of Strings",
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      "Description": "A backend for the selecting functions of the 'tidyverse'.  It makes it easy to implement select-like functions in your own packages in a way that is consistent with other 'tidyverse' interfaces for selection.",
      "License": "MIT + file LICENSE",
      "URL": "https://tidyselect.r-lib.org, https://github.com/r-lib/tidyselect",
      "BugReports": "https://github.com/r-lib/tidyselect/issues",
      "Depends": [
        "R (>= 3.4)"
      ],
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        "cli (>= 3.3.0)",
        "glue (>= 1.3.0)",
        "lifecycle (>= 1.0.3)",
        "rlang (>= 1.0.4)",
        "vctrs (>= 0.5.2)",
        "withr"
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      "Suggests": [
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      "VignetteBuilder": "knitr",
      "ByteCompile": "true",
      "Config/testthat/edition": "3",
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      "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
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      "Version": "0.54",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Devon\", \"Ryan\", role = \"ctb\", email = \"dpryan79@gmail.com\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Ethan\", \"Heinzen\", role = \"ctb\"), person(\"Fernando\", \"Cagua\", role = \"ctb\"), person() )",
      "Description": "Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform, portable, and easy-to-maintain version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.",
      "Imports": [
        "xfun (>= 0.48)"
      ],
      "Suggests": [
        "testit",
        "rstudioapi"
      ],
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/rstudio/tinytex",
      "BugReports": "https://github.com/rstudio/tinytex/issues",
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      "RoxygenNote": "7.3.2",
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      "Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>), Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>), Ethan Heinzen [ctb], Fernando Cagua [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
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      "Version": "1.0-2",
      "Source": "Repository",
      "Date": "2016-08-29",
      "Author": "Frederick Novomestky <fn334@nyu.edu>, Saralees Nadarajah <saralees.nadarajah@manchester.ac.uk>",
      "Maintainer": "Frederick Novomestky <fnovomes@poly.edu>",
      "Depends": [
        "R (>= 2.0.1)",
        "stats4",
        "evd"
      ],
      "Description": "A collection of tools to evaluate probability density functions, cumulative distribution functions, quantile functions and random numbers for truncated random variables.  These functions are provided to also compute the expected value and variance. Nadarajah and Kotz (2006) developed most of the functions. QQ plots can be produced. All the probability functions in the stats, stats4 and evd packages are automatically available for truncation..",
      "Title": "Truncated Random Variables",
      "License": "GPL (>= 2)",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
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      "Package": "tweenr",
      "Version": "2.0.3",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Interpolate Data for Smooth Animations",
      "Authors@R": "c(person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"aut\", \"cre\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\")))",
      "Maintainer": "Thomas Lin Pedersen <thomasp85@gmail.com>",
      "Description": "In order to create smooth animation between states of data, tweening is necessary. This package provides a range of functions for creating tweened data that can be used as basis for animation. Furthermore  it adds a number of vectorized interpolaters for common R data  types such as numeric, date and colour.",
      "URL": "https://github.com/thomasp85/tweenr",
      "BugReports": "https://github.com/thomasp85/tweenr/issues",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
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        "R (>= 3.2.0)"
      ],
      "Imports": [
        "farver",
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      "Author": "Thomas Lin Pedersen [aut, cre] (<https://orcid.org/0000-0002-5147-4711>)",
      "Repository": "CRAN"
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      "Version": "0.4.0",
      "Source": "Repository",
      "Title": "Time Zone Database Information",
      "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Howard\", \"Hinnant\", role = \"cph\", comment = \"Author of the included date library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Provides an up-to-date copy of the Internet Assigned Numbers Authority (IANA) Time Zone Database. It is updated periodically to reflect changes made by political bodies to time zone boundaries, UTC offsets, and daylight saving time rules. Additionally, this package provides a C++ interface for working with the 'date' library. 'date' provides comprehensive support for working with dates and date-times, which this package exposes to make it easier for other R packages to utilize. Headers are provided for calendar specific calculations, along with a limited interface for time zone manipulations.",
      "License": "MIT + file LICENSE",
      "URL": "https://tzdb.r-lib.org, https://github.com/r-lib/tzdb",
      "BugReports": "https://github.com/r-lib/tzdb/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
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        "testthat (>= 3.0.0)"
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      "Biarch": "yes",
      "Config/Needs/website": "tidyverse/tidytemplate",
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      "NeedsCompilation": "yes",
      "Author": "Davis Vaughan [aut, cre], Howard Hinnant [cph] (Author of the included date library), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Davis Vaughan <davis@posit.co>",
      "Repository": "CRAN"
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      "Version": "1.2.4",
      "Source": "Repository",
      "Title": "Unicode Text Processing",
      "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\"), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))",
      "Description": "Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.",
      "License": "Apache License (== 2.0) | file LICENSE",
      "URL": "https://ptrckprry.com/r-utf8/, https://github.com/patperry/r-utf8",
      "BugReports": "https://github.com/patperry/r-utf8/issues",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Suggests": [
        "cli",
        "covr",
        "knitr",
        "rlang",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "withr"
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      "VignetteBuilder": "knitr, rmarkdown",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre], Unicode, Inc. [cph, dtc] (Unicode Character Database)",
      "Maintainer": "Kirill Müller <kirill@cynkra.com>",
      "Repository": "CRAN"
    },
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      "Package": "uwot",
      "Version": "0.2.2",
      "Source": "Repository",
      "Title": "The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction",
      "Authors@R": "c( person(\"James\", \"Melville\", , \"jlmelville@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Aaron\", \"Lun\", role = \"ctb\"), person(\"Mohamed Nadhir\", \"Djekidel\", role = \"ctb\"), person(\"Yuhan\", \"Hao\", role = \"ctb\"), person(\"Dirk\", \"Eddelbuettel\", role = \"ctb\") )",
      "Description": "An implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018) <doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and to carry out supervised dimensionality reduction. An implementation of the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370> is also provided. This is a complete re-implementation in R (and C++, via the 'Rcpp' package): no Python installation is required. See the uwot website (<https://github.com/jlmelville/uwot>) for more documentation and examples.",
      "License": "GPL (>= 3)",
      "URL": "https://github.com/jlmelville/uwot, https://jlmelville.github.io/uwot/",
      "BugReports": "https://github.com/jlmelville/uwot/issues",
      "Depends": [
        "Matrix"
      ],
      "Imports": [
        "FNN",
        "irlba",
        "methods",
        "Rcpp",
        "RcppAnnoy (>= 0.0.17)",
        "RSpectra"
      ],
      "Suggests": [
        "bigstatsr",
        "covr",
        "knitr",
        "RcppHNSW",
        "rmarkdown",
        "rnndescent",
        "testthat"
      ],
      "LinkingTo": [
        "dqrng",
        "Rcpp",
        "RcppAnnoy",
        "RcppProgress"
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      "VignetteBuilder": "knitr",
      "Config/Needs/website": "rmarkdown",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "yes",
      "Author": "James Melville [aut, cre, cph], Aaron Lun [ctb], Mohamed Nadhir Djekidel [ctb], Yuhan Hao [ctb], Dirk Eddelbuettel [ctb]",
      "Maintainer": "James Melville <jlmelville@gmail.com>",
      "Repository": "CRAN"
    },
    "vctrs": {
      "Package": "vctrs",
      "Version": "0.6.5",
      "Source": "Repository",
      "Title": "Vector Helpers",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"data.table team\", role = \"cph\", comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "Defines new notions of prototype and size that are used to provide tools for consistent and well-founded type-coercion and size-recycling, and are in turn connected to ideas of type- and size-stability useful for analysing function interfaces.",
      "License": "MIT + file LICENSE",
      "URL": "https://vctrs.r-lib.org/, https://github.com/r-lib/vctrs",
      "BugReports": "https://github.com/r-lib/vctrs/issues",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "cli (>= 3.4.0)",
        "glue",
        "lifecycle (>= 1.0.3)",
        "rlang (>= 1.1.0)"
      ],
      "Suggests": [
        "bit64",
        "covr",
        "crayon",
        "dplyr (>= 0.8.5)",
        "generics",
        "knitr",
        "pillar (>= 1.4.4)",
        "pkgdown (>= 2.0.1)",
        "rmarkdown",
        "testthat (>= 3.0.0)",
        "tibble (>= 3.1.3)",
        "waldo (>= 0.2.0)",
        "withr",
        "xml2",
        "zeallot"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "Language": "en-GB",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "yes",
      "Author": "Hadley Wickham [aut], Lionel Henry [aut], Davis Vaughan [aut, cre], data.table team [cph] (Radix sort based on data.table's forder() and their contribution to R's order()), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Davis Vaughan <davis@posit.co>",
      "Repository": "CRAN"
    },
    "vipor": {
      "Package": "vipor",
      "Version": "0.4.7",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Plot Categorical Data Using Quasirandom Noise and Density Estimates",
      "Date": "2023-12-15",
      "Author": "Scott Sherrill-Mix, Erik Clarke",
      "Maintainer": "Scott Sherrill-Mix <ssm@msu.edu>",
      "Description": "Generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom noise.",
      "License": "GPL (>= 2)",
      "LazyData": "True",
      "Depends": [
        "R (>= 3.5.0)"
      ],
      "Imports": [
        "stats",
        "graphics"
      ],
      "Suggests": [
        "testthat",
        "beeswarm",
        "lattice",
        "ggplot2",
        "beanplot",
        "vioplot",
        "ggbeeswarm"
      ],
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Repository": "CRAN"
    },
    "viridis": {
      "Package": "viridis",
      "Version": "0.6.5",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Colorblind-Friendly Color Maps for R",
      "Date": "2024-01-28",
      "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )",
      "Maintainer": "Simon Garnier <garnier@njit.edu>",
      "Description": "Color maps designed to improve graph readability for readers with  common forms of color blindness and/or color vision deficiency. The color  maps are also perceptually-uniform, both in regular form and also when  converted to black-and-white for printing. This package also contains  'ggplot2' bindings for discrete and continuous color and fill scales. A lean version of the package called 'viridisLite' that does not include the  'ggplot2' bindings can be found at  <https://cran.r-project.org/package=viridisLite>.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 2.10)",
        "viridisLite (>= 0.4.0)"
      ],
      "Imports": [
        "ggplot2 (>= 1.0.1)",
        "gridExtra"
      ],
      "Suggests": [
        "hexbin (>= 1.27.0)",
        "scales",
        "MASS",
        "knitr",
        "dichromat",
        "colorspace",
        "httr",
        "mapproj",
        "vdiffr",
        "svglite (>= 1.2.0)",
        "testthat",
        "covr",
        "rmarkdown",
        "maps",
        "terra"
      ],
      "LazyData": "true",
      "VignetteBuilder": "knitr",
      "URL": "https://sjmgarnier.github.io/viridis/, https://github.com/sjmgarnier/viridis/",
      "BugReports": "https://github.com/sjmgarnier/viridis/issues",
      "RoxygenNote": "7.3.1",
      "NeedsCompilation": "no",
      "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]",
      "Repository": "CRAN"
    },
    "viridisLite": {
      "Package": "viridisLite",
      "Version": "0.4.2",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Colorblind-Friendly Color Maps (Lite Version)",
      "Date": "2023-05-02",
      "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )",
      "Maintainer": "Simon Garnier <garnier@njit.edu>",
      "Description": "Color maps designed to improve graph readability for readers with  common forms of color blindness and/or color vision deficiency. The color  maps are also perceptually-uniform, both in regular form and also when  converted to black-and-white for printing. This is the 'lite' version of the  'viridis' package that also contains 'ggplot2' bindings for discrete and  continuous color and fill scales and can be found at  <https://cran.r-project.org/package=viridis>.",
      "License": "MIT + file LICENSE",
      "Encoding": "UTF-8",
      "Depends": [
        "R (>= 2.10)"
      ],
      "Suggests": [
        "hexbin (>= 1.27.0)",
        "ggplot2 (>= 1.0.1)",
        "testthat",
        "covr"
      ],
      "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/",
      "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/",
      "RoxygenNote": "7.2.3",
      "NeedsCompilation": "no",
      "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]",
      "Repository": "CRAN"
    },
    "vroom": {
      "Package": "vroom",
      "Version": "1.6.5",
      "Source": "Repository",
      "Title": "Read and Write Rectangular Text Data Quickly",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial indexing step, then reads the values lazily , so only the data you actually use needs to be read.  The writer formats the data in parallel and writes to disk asynchronously from formatting.",
      "License": "MIT + file LICENSE",
      "URL": "https://vroom.r-lib.org, https://github.com/tidyverse/vroom",
      "BugReports": "https://github.com/tidyverse/vroom/issues",
      "Depends": [
        "R (>= 3.6)"
      ],
      "Imports": [
        "bit64",
        "cli (>= 3.2.0)",
        "crayon",
        "glue",
        "hms",
        "lifecycle (>= 1.0.3)",
        "methods",
        "rlang (>= 0.4.2)",
        "stats",
        "tibble (>= 2.0.0)",
        "tidyselect",
        "tzdb (>= 0.1.1)",
        "vctrs (>= 0.2.0)",
        "withr"
      ],
      "Suggests": [
        "archive",
        "bench (>= 1.1.0)",
        "covr",
        "curl",
        "dplyr",
        "forcats",
        "fs",
        "ggplot2",
        "knitr",
        "patchwork",
        "prettyunits",
        "purrr",
        "rmarkdown",
        "rstudioapi",
        "scales",
        "spelling",
        "testthat (>= 2.1.0)",
        "tidyr",
        "utils",
        "waldo",
        "xml2"
      ],
      "LinkingTo": [
        "cpp11 (>= 0.2.0)",
        "progress (>= 1.2.1)",
        "tzdb (>= 0.1.1)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "nycflights13, tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Config/testthat/parallel": "false",
      "Copyright": "file COPYRIGHTS",
      "Encoding": "UTF-8",
      "Language": "en-US",
      "RoxygenNote": "7.2.3.9000",
      "NeedsCompilation": "yes",
      "Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd]",
      "Maintainer": "Jennifer Bryan <jenny@posit.co>",
      "Repository": "CRAN"
    },
    "withr": {
      "Package": "withr",
      "Version": "3.0.2",
      "Source": "Repository",
      "Title": "Run Code 'With' Temporarily Modified Global State",
      "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", , \"krlmlr+r@mailbox.org\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
      "Description": "A set of functions to run code 'with' safely and temporarily modified global state. Many of these functions were originally a part of the 'devtools' package, this provides a simple package with limited dependencies to provide access to these functions.",
      "License": "MIT + file LICENSE",
      "URL": "https://withr.r-lib.org, https://github.com/r-lib/withr#readme",
      "BugReports": "https://github.com/r-lib/withr/issues",
      "Depends": [
        "R (>= 3.6.0)"
      ],
      "Imports": [
        "graphics",
        "grDevices"
      ],
      "Suggests": [
        "callr",
        "DBI",
        "knitr",
        "methods",
        "rlang",
        "rmarkdown (>= 2.12)",
        "RSQLite",
        "testthat (>= 3.0.0)"
      ],
      "VignetteBuilder": "knitr",
      "Config/Needs/website": "tidyverse/tidytemplate",
      "Config/testthat/edition": "3",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "Collate": "'aaa.R' 'collate.R' 'connection.R' 'db.R' 'defer-exit.R' 'standalone-defer.R' 'defer.R' 'devices.R' 'local_.R' 'with_.R' 'dir.R' 'env.R' 'file.R' 'language.R' 'libpaths.R' 'locale.R' 'makevars.R' 'namespace.R' 'options.R' 'par.R' 'path.R' 'rng.R' 'seed.R' 'wrap.R' 'sink.R' 'tempfile.R' 'timezone.R' 'torture.R' 'utils.R' 'with.R'",
      "NeedsCompilation": "no",
      "Author": "Jim Hester [aut], Lionel Henry [aut, cre], Kirill Müller [aut], Kevin Ushey [aut], Hadley Wickham [aut], Winston Chang [aut], Jennifer Bryan [ctb], Richard Cotton [ctb], Posit Software, PBC [cph, fnd]",
      "Maintainer": "Lionel Henry <lionel@posit.co>",
      "Repository": "CRAN"
    },
    "xfun": {
      "Package": "xfun",
      "Version": "0.49",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'",
      "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )",
      "Description": "Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.",
      "Depends": [
        "R (>= 3.2.0)"
      ],
      "Imports": [
        "grDevices",
        "stats",
        "tools"
      ],
      "Suggests": [
        "testit",
        "parallel",
        "codetools",
        "methods",
        "rstudioapi",
        "tinytex (>= 0.30)",
        "mime",
        "litedown",
        "commonmark",
        "knitr (>= 1.47)",
        "remotes",
        "pak",
        "rhub",
        "renv",
        "curl",
        "xml2",
        "jsonlite",
        "magick",
        "yaml",
        "qs",
        "rmarkdown"
      ],
      "License": "MIT + file LICENSE",
      "URL": "https://github.com/yihui/xfun",
      "BugReports": "https://github.com/yihui/xfun/issues",
      "Encoding": "UTF-8",
      "RoxygenNote": "7.3.2",
      "VignetteBuilder": "litedown",
      "NeedsCompilation": "yes",
      "Author": "Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]",
      "Maintainer": "Yihui Xie <xie@yihui.name>",
      "Repository": "CRAN"
    },
    "xgboost": {
      "Package": "xgboost",
      "Version": "1.7.8.1",
      "Source": "Repository",
      "Type": "Package",
      "Title": "Extreme Gradient Boosting",
      "Date": "2024-07-22",
      "Authors@R": "c( person(\"Tianqi\", \"Chen\", role = c(\"aut\"), email = \"tianqi.tchen@gmail.com\"), person(\"Tong\", \"He\", role = c(\"aut\"), email = \"hetong007@gmail.com\"), person(\"Michael\", \"Benesty\", role = c(\"aut\"), email = \"michael@benesty.fr\"), person(\"Vadim\", \"Khotilovich\", role = c(\"aut\"), email = \"khotilovich@gmail.com\"), person(\"Yuan\", \"Tang\", role = c(\"aut\"), email = \"terrytangyuan@gmail.com\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Hyunsu\", \"Cho\", role = c(\"aut\"), email = \"chohyu01@cs.washington.edu\"), person(\"Kailong\", \"Chen\", role = c(\"aut\")), person(\"Rory\", \"Mitchell\", role = c(\"aut\")), person(\"Ignacio\", \"Cano\", role = c(\"aut\")), person(\"Tianyi\", \"Zhou\", role = c(\"aut\")), person(\"Mu\", \"Li\", role = c(\"aut\")), person(\"Junyuan\", \"Xie\", role = c(\"aut\")), person(\"Min\", \"Lin\", role = c(\"aut\")), person(\"Yifeng\", \"Geng\", role = c(\"aut\")), person(\"Yutian\", \"Li\", role = c(\"aut\")), person(\"Jiaming\", \"Yuan\", role = c(\"aut\", \"cre\"), email = \"jm.yuan@outlook.com\"), person(\"XGBoost contributors\", role = c(\"cph\"), comment = \"base XGBoost implementation\") )",
      "Maintainer": "Jiaming Yuan <jm.yuan@outlook.com>",
      "Description": "Extreme Gradient Boosting, which is an efficient implementation of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>. This package is its R interface. The package includes efficient linear model solver and tree learning algorithms. The package can automatically do parallel computation on a single machine which could be more than 10 times faster than existing gradient boosting packages. It supports various objective functions, including regression, classification and ranking. The package is made to be extensible, so that users are also allowed to define their own objectives easily.",
      "License": "Apache License (== 2.0) | file LICENSE",
      "URL": "https://github.com/dmlc/xgboost",
      "BugReports": "https://github.com/dmlc/xgboost/issues",
      "NeedsCompilation": "yes",
      "VignetteBuilder": "knitr",
      "Suggests": [
        "knitr",
        "rmarkdown",
        "ggplot2 (>= 1.0.1)",
        "DiagrammeR (>= 0.9.0)",
        "Ckmeans.1d.dp (>= 3.3.1)",
        "vcd (>= 1.3)",
        "testthat",
        "lintr",
        "igraph (>= 1.0.1)",
        "float",
        "crayon",
        "titanic"
      ],
      "Depends": [
        "R (>= 3.3.0)"
      ],
      "Imports": [
        "Matrix (>= 1.1-0)",
        "methods",
        "data.table (>= 1.9.6)",
        "jsonlite (>= 1.0)"
      ],
      "RoxygenNote": "7.2.3",
      "Encoding": "UTF-8",
      "SystemRequirements": "GNU make, C++17",
      "Author": "Tianqi Chen [aut], Tong He [aut], Michael Benesty [aut], Vadim Khotilovich [aut], Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>), Hyunsu Cho [aut], Kailong Chen [aut], Rory Mitchell [aut], Ignacio Cano [aut], Tianyi Zhou [aut], Mu Li [aut], Junyuan Xie [aut], Min Lin [aut], Yifeng Geng [aut], Yutian Li [aut], Jiaming Yuan [aut, cre], XGBoost contributors [cph] (base XGBoost implementation)",
      "Repository": "CRAN"
    },
    "xml2": {
      "Package": "xml2",
      "Version": "1.3.6",
      "Source": "Repository",
      "Title": "Parse XML",
      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )",
      "Description": "Work with XML files using a simple, consistent interface. Built on top of the 'libxml2' C library.",
      "License": "MIT + file LICENSE",
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      "Author": "Hadley Wickham [aut, cre], Jim Hester [aut], Jeroen Ooms [aut], Posit Software, PBC [cph, fnd], R Foundation [ctb] (Copy of R-project homepage cached as example)",
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      "Author": "Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>), Gabor Grothendieck [aut], Jeffrey A. Ryan [aut], Joshua M. Ulrich [ctb], Felix Andrews [ctb]",
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}