[CI] Update pre-commit hooks (#621)

Co-authored-by: hcho3 <2532981+hcho3@users.noreply.github.com>

Author: token-generator-for-automated-prs[bot]

.pre-commit-config.yaml

@@ -65,7 +65,7 @@ repos:
     - id: mypy
       additional_dependencies: [types-setuptools]
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.12.8
+  rev: v0.12.9
   hooks:
     - id: ruff
       args: ["--config", "python/pyproject.toml"]