[CI] Update pre-commit hooks (#619)

Co-authored-by: hcho3 <2532981+hcho3@users.noreply.github.com>

Author: token-generator-for-automated-prs[bot]

.pre-commit-config.yaml

@@ -2,7 +2,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v5.0.0
+  rev: v6.0.0
   hooks:
   - id: trailing-whitespace
   - id: end-of-file-fixer
@@ -65,7 +65,7 @@ repos:
     - id: mypy
       additional_dependencies: [types-setuptools, numpy]
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.12.7
+  rev: v0.12.8
   hooks:
     - id: ruff
       args: ["--config", "python/pyproject.toml"]