Slim/0.0.11 (#94)

* log pulls
* cleanup mcp client go loop
* Fix the read-loop problems
* Update atlassian schema
* update function_write_files container

Author: slimslenderslacks

dev/http_client.clj

@@ -0,0 +1,58 @@
+(ns http-client
+  (:require
+   [babashka.curl :as curl]
+   [cheshire.core :as json]
+   [clojure.java.io :as io]) 
+  (:import
+   [java.io BufferedInputStream]))
+
+(def connect-response
+  (curl/get "https://gitmcp.io/docker/labs-ai-tools-for-devs/sse"
+            {:headers {"Accept" "text/event-stream"
+                       "Connection" "keep-alive"}
+             :as :stream}))
+
+(defn event-reader [response name]
+  (.start
+    (Thread.
+      (fn []
+        (let [rdr (io/reader (BufferedInputStream. (:body response)))]
+          (loop []
+            (let [line (.readLine rdr)]
+              (when line
+                (println (format "%s: %s" name line))
+                (recur))))
+          (println (format "%s: %s" name "done reading stream")))))))
+
+(event-reader connect-response "connect")
+
+(defn initialize [url]
+  (curl/post (format "https://gitmcp.io/slimslenderslacks/hani%s" url)
+             {:headers {"Accept" "text/event-stream"
+                        "Content-Type" "application/json"
+                        "Connection" "keep-alive"}
+              :throw false
+              :body (json/generate-string {:jsonrpc "2.0"
+                                           :method "initialize"
+                                           :id 0
+                                           :params {:protocolVersion "2024-11-05"
+                                                    :capabilities {}
+                                                    :clientInfo {:name "SSE Client" :version "0.1"}}}) }))
+
+;; must be 202 Accepted
+(def initialize-response (initialize "/*/message?sessionId=b55383c621227380ce7e6182347c49cf1b12270501cc29fb9745b72732b32907"))
+
+(defn tool-list [url]
+  (curl/post (format "https://gitmcp.io/slimslenderslacks/hani%s" url)
+             {:headers {"Accept" "text/event-stream"
+                        "Content-Type" "application/json"
+                        "Connection" "keep-alive"}
+              :throw false
+              :body (json/generate-string {:jsonrpc "2.0"
+                                           :method "tools/list"
+                                           :id 1
+                                           :params {}}) }))
+
+(def tool-list-response (tool-list "/*/message?sessionId=b55383c621227380ce7e6182347c49cf1b12270501cc29fb9745b72732b32907"))
+(.close (:body connect-response))
+

functions/github-mcp-server/Dockerfile

@@ -3,4 +3,4 @@ RUN apk add --no-cache ca-certificates
 
 WORKDIR /server
 COPY --from=ghcr.io/github/github-mcp-server  /server/github-mcp-server .
-ENTRYPOINT ["/server/github-mcp-server", "stdio"]
+ENTRYPOINT ["/server/github-mcp-server", "stdio"]

functions/write_files/Dockerfile

@@ -20,10 +20,6 @@ RUN --mount=type=cache,target=/nix,from=nixos/nix:2.21.1,source=/nix \
     --log-format raw \
     build . --out-link /tmp/output/result
   cp -R $(nix-store -qR /tmp/output/result) /tmp/nix-store-closure
-  ## compute SBOM for the entire runtime graph
-  #nix \
-    #--extra-experimental-features "nix-command flakes" \
-    #run github:tiiuae/sbomnix#sbomnix -- /tmp/output/result --spdx /tmp/sbom.spdx.json
 EOF
 
 FROM scratch

functions/write_files/flake.nix

@@ -35,25 +35,60 @@
               cp init.clj $out
             '';
           };
-          entrypoint = pkgs.writeShellScriptBin "entrypoint" ''
-            ${pkgs.babashka}/bin/bb ${scripts} "$@"
-          '';
-          packages = rec {
-            default = pkgs.buildEnv {
-              name = "install";
-              paths = [
-                pkgs.coreutils
-                entrypoint
-              ];
-            };
-          };
-
-          devShells.default = pkgs.devshell.mkShell {
-            name = "devshell";
-            packages = with pkgs; [ babashka clojure ];
 
-            commands = [
-            ];
-          };
-        });
+          entrypoint = pkgs.writeShellScriptBin "entrypoint" ''
+            # Check if an argument was provided
+            if [ $# -eq 0 ]; then
+                echo "Error: No JSON argument provided"
+                echo "Usage: $0 '{\"files\": [{\"path\": \"path\", \"executable\": false, \"content\": \"content\"}]}'"
+                exit 1
+            fi
+            
+            # Store the JSON input
+            json_input="$1"
+            
+            # Validate JSON structure
+            if ! echo "$json_input" | ${pkgs.jq}/bin/jq . &> /dev/null; then
+                echo "Error: Invalid JSON format"
+                exit 1
+            fi
+            
+            # Check if the JSON has the expected structure
+            if ! echo "$json_input" | ${pkgs.jq}/bin/jq -e '.files' &> /dev/null; then
+                echo "Error: JSON does not contain 'files' array"
+                exit 1
+            fi
+            
+            # Get the number of files
+            file_count=$(echo "$json_input" | ${pkgs.jq}/bin/jq '.files | length')
+            
+            # Initialize an array to store successfully written file paths
+            declare -a written_files
+            
+            # Process each file in the array
+            for ((i=0; i<$file_count; i++)); do
+              # Extract file information
+              path=$(echo "$json_input" | ${pkgs.jq}/bin/jq -r ".files[$i].path")
+              executable=$(echo "$json_input" | ${pkgs.jq}/bin/jq -r ".files[$i].executable")
+              content=$(echo "$json_input" | ${pkgs.jq}/bin/jq -r ".files[$i].content")
+              
+              # Write the content to the file
+              echo "$content" > "$path"
+              
+              # Check if the write was successful
+              if [ $? -eq 0 ]; then
+                  # Add to the list of successfully written files
+                  written_files+=("$path")
+              else
+                  echo "Error: Failed to write to $path"
+              fi
+            done
+            
+            printf "wrote files: \n"
+            exit 0
+            
+            '';
+            
+    packages.default = entrypoint; 
+  });
 }

functions/write_files/init.clj

@@ -10,14 +10,18 @@ The `write_file` function has wo parameters.
 This function should be given a rw bind mount for the root of a project.
 
 ```sh
-docker run --rm --mount type=bind,source=$PWD,target=/project 
-                --workdir /project 
-                vonwig/function_write_files:latest 
-                "$(echo '{"files":[{"path":"file1.txt","content":"hellow world"}]}')"
+docker run --rm --mount type=bind,source=$PWD,target=/project \
+                --workdir /project \
+                vonwig/function_write_files:latest \
+                '{"files":[{"path":"file1.txt","content":"hellow world"}]}'
 ```
 
 ## Build
 
+```sh
+docker build -t vonwig/function_write_files:latest .
+```
+
 ```sh
 # docker:command=build
 

functions/write_files/runbook.md

@@ -3,6 +3,7 @@ registry:
     description: The MCP SQLite promptfile contributes all of the tools necessary to work with SQLite and SQLite databases. The file also includes a prompt to seed the database with initial data which helps to demonstrate what you can do with an SQLite MCP Server.
     ref: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/examples/mcp-sqlite.md
     readme: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/mcp/readmes/sqlite.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/examples/mcp-sqlite.md
     icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/sqlite.svg
     tools:
       - name: read-query
@@ -16,6 +17,7 @@ registry:
   curl:
     description: This prompt file contains the standard curl tool. In addition to the tool itself, you get a tool to read the latest man page to help clear up any issues. It also contains a prompt to demonstrate how to use the tool in a multi-step process.
     ref: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/examples/curl.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/examples/curl.md
     icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/curl.svg
     tools:
       - name: curl-manual
@@ -25,6 +27,7 @@ registry:
   ffmpeg:
     description: Use ffmpeg to process video files. This prompt file contains the ffmpeg tool, and a tool to read the latest man page to help clear up any issues. It also contains a prompt to demonstrate how to use the tool in a multi-step process.
     ref: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/examples/ffmpeg.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/examples/ffmpeg.md
     icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/ffmpeg.svg
     tools:
       - name: imagemagick-manual
@@ -36,6 +39,7 @@ registry:
   qr code:
     description: Generate a qrcode for an input text string
     ref: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/examples/qrencode.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/examples/qrencode.md
     icon: https://2.gravatar.com/userimage/39790510/4918b92358fde20da56c0ec8e5ac7a23?size=256
     tools:
       - name: qrencode
@@ -45,6 +49,7 @@ registry:
     description: Give your MCP client a memory system! This prompt file contains a tool to create entities, relations, and observations in a knowledge graph. It also contains a tool to read the latest man page to help clear up any issues. It also contains a prompt to demonstrate how to use the tool in a multi-step process.
     ref: github:docker/labs-ai-tools-for-devs?path=prompts/examples/mcp-memory.md
     readme: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/mcp/readmes/memory.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/examples/mcp-memory.md
     icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/knowledgebase.svg
     tools:
       - name: create_entities
@@ -61,6 +66,7 @@ registry:
   chrome:
     description: Drive a headless Chrome browser to interact with web pages
     ref: github:docker/labs-ai-tools-for-devs?path=prompts/chrome.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/chrome.md
     icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/googlechrome.svg
     tools:
       - name: interact-with-chrome
@@ -72,6 +78,7 @@ registry:
   sequentialthinking:
     description: A tool for dynamic and reflective problem-solving through a structured thinking process
     ref: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/examples/sequentialthinking.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/examples/sequentialthinking.md
     readme: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/mcp/readmes/sequentialthinking.md
     icon: https://d3t3ozftmdmh3i.cloudfront.net/production/podcast_uploaded_nologo/2454513/2454513-1570719639731-bfdf3620a4e0d.jpg
     tools:
@@ -205,6 +212,9 @@ registry:
     description: This MCP server integrates with Google Drive to allow listing, reading, and searching over files
     ref: github:docker/labs-ai-tools-for-devs?path=prompts/mcp/gdrive.md
     icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/googledrive.svg
+    source: https://github.com/modelcontextprotocol/servers/tree/2025.4.6/src/gdrive
+    secrets:
+      - name: google.gcp-oauth.keys.json
     tools:
       - name: gdrive_auth
     secrets:
@@ -236,6 +246,7 @@ registry:
     description: A Model Context Protocol server for Git repository interaction and automation
     ref: github:docker/labs-ai-tools-for-devs?path=prompts/examples/git.md
     readme: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/mcp/readmes/git.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/examples/git.md
     icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/git.svg
     tools:
       - name: git
@@ -315,7 +326,7 @@ registry:
       Local filesystem access with configurable allowed paths
     ref: github:docker/labs-ai-tools-for-devs?path=prompts/mcp/filesystem.md
     readme: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/mcp/readmes/filesystem.md
-    source: https://github.com/modelcontextprotocol/servers/tree/main/src/filesystem
+    source: https://github.com/modelcontextprotocol/servers/tree/2025.4.6
     icon: https://avatars.githubusercontent.com/u/182288589?s=200&v=4
     tools: []
     prompts: 0
@@ -344,6 +355,7 @@ registry:
   postgres readonly:
     description: Connect with read-only access to PostgreSQL databases. This server enables LLMs to inspect database schemas and execute read-only queries.
     ref: github:docker/labs-ai-tools-for-devs?path=prompts/mcp/postgres.md
+    source: https://github.com/modelcontextprotocol/servers/tree/2025.4.6
     icon: https://img.icons8.com/ios/50/postgreesql.png
     tools: []
     secrets:
@@ -384,6 +396,7 @@ registry:
     description: |
       Bootstrap new tools from your MCP client
     ref: github:docker/labs-ai-tools-for-devs?path=prompts/bootstrap.md
+    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/prompts/bootstrap.md
     icon: https://avatars.githubusercontent.com/u/182288589?s=200&v=4
     tools:
       - name: tool-registration
@@ -467,10 +480,16 @@ registry:
       - name: jira_transition_issue
       - name: jira_update_issue
     secrets:
-      - name: atlassian.jira.token
-      - name: atlassian.confluence.token
     prompts: 0
     resources: {}
+      - name: atlassian.jira.api_token
+        required: false
+      - name: atlassian.confluence.api_token
+        required: false
+      - name: atlassian.jira.personal_token
+        required: false
+      - name: atlassian.confluence.personal_token
+        required: false
     config:
       - name: atlassian
         description: The MCP server is allowed to access these paths
@@ -655,8 +674,8 @@ registry:
     description: Provides seamless integration with GitHub APIs, enabling advanced automation and interaction capabilities for developers and tools.
     ref: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/mcp/github-official.md
     readme: github:docker/labs-ai-tools-for-devs?ref=main&path=prompts/mcp/readmes/github-official.md
-    source: https://github.com/docker/labs-ai-tools-for-devs/tree/main/functions/github-mcp-server
-    icon: https://avatars.githubusercontent.com/u/9919?s=200&v=4
+    source: https://github.com/github/github-mcp-server
+    icon: https://cdn.jsdelivr.net/npm/simple-icons@v7/icons/github.svg
     tools:
       - name: add_issue_comment
       - name: create_branch

prompts/catalog.yaml

@@ -11,6 +11,11 @@ mcp:
         CONFLUENCE_USERNAME: "{{atlassian.confluence.username}}"
         JIRA_URL: "{{atlassian.jira.url}}"
         JIRA_USERNAME: "{{atlassian.jira.username}}"
+      secrets:
+        atlassian.jira.personal_token: JIRA_PERSONAL_TOKEN
+        atlassian.confluence.personal_token: CONFLUENCE_PERSONAL_TOKEN
+        atlassian.jira.api_token: JIRA_API_TOKEN
+        atlassian.confluence.api_token: CONFLUENCE_API_TOKEN
     source:
       url: https://github.com/sooperset/mcp-atlassian/tree/main
 ---

prompts/mcp/atlassian.md

@@ -20,7 +20,7 @@ docker pull mcp/docker:prerelease
 
 ```sh
 # docker:command=build-release
-VERSION="0.0.10"
+VERSION="0.0.11"
 docker buildx build \
     --builder hydrobuild \
     --platform linux/amd64,linux/arm64 \