Merge branch 'master' into mulled-v2-ce6b2c8dda676792a88c437ccd0ca82eb0b93896-329d47b5834ef01f34fabdac468833644fbc5feb

bgruening · web-flow · commit ac59c869946e · 2025-12-10T20:47:06.000+01:00
diff --git a/combinations/mulled-v2-03d30cf7bcc23ba5d755e498a98359af8a2cd947:f44efbaa5c998a6bf81334e4e6c57bc1488748a3-0.tsv b/combinations/mulled-v2-03d30cf7bcc23ba5d755e498a98359af8a2cd947:f44efbaa5c998a6bf81334e4e6c57bc1488748a3-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+bcftools=1.22,htslib=1.22.1,gawk=5.3.0,samtools=1.22.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-1bd7c143fec0659638fb990d05ec2cc030bd8b61:ef66e92b1a82926e2aeffe95dfaf5dfd853ea2b6-0.tsv b/combinations/mulled-v2-1bd7c143fec0659638fb990d05ec2cc030bd8b61:ef66e92b1a82926e2aeffe95dfaf5dfd853ea2b6-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+coreprofiler=1.1.8,blast=2.16.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-1d9673528d7dd295349af77d8ecfaad41467ae6d:1ca2f7a3a82b59c664168f0ac84876075ccf17e5-0.tsv b/combinations/mulled-v2-1d9673528d7dd295349af77d8ecfaad41467ae6d:1ca2f7a3a82b59c664168f0ac84876075ccf17e5-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+scipy=1.16.2,medaka=2.1.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-2ec499ab6992d230402ec5e6821f2fc15d1ed8dc:fba1a9087d098de3b48ab48b2fca412e641e199e-0.tsv b/combinations/mulled-v2-2ec499ab6992d230402ec5e6821f2fc15d1ed8dc:fba1a9087d098de3b48ab48b2fca412e641e199e-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+boto3=1.41.0,botocore=1.41.0,bash=5.2.37,python=3.14.0,copernicusmarine=2.0,jq=1.8.1,netcdf4=1.7.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-3b8ae3f63a29f67694ef6c56735fdbc8b6519912:842e75e30f6994b31f15767c30292769e5207fab-0.tsv b/combinations/mulled-v2-3b8ae3f63a29f67694ef6c56735fdbc8b6519912:842e75e30f6994b31f15767c30292769e5207fab-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+botocore=1.41.0,boto3=1.41.0,pandas=2.3.3,bash=5.2.37,python=3.14.0,cdsapi=0.7.7	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-4046a3b419fc1d57d709b7a143645d599908d9e4:e4d13fd372b24e86911f9d58eed65bb1b97372bf-0.tsv b/combinations/mulled-v2-4046a3b419fc1d57d709b7a143645d599908d9e4:e4d13fd372b24e86911f9d58eed65bb1b97372bf-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+bcftools=1.22,htslib=1.22.1,python=3.7	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-547c8a50abcc87dd9c56eef18e501b06ff1b77d1:97dffc90cb126fb93153cd9049d6c46161a4e657-0.tsv b/combinations/mulled-v2-547c8a50abcc87dd9c56eef18e501b06ff1b77d1:97dffc90cb126fb93153cd9049d6c46161a4e657-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+bcftools=1.22,htslib=1.22.1,samtools=1.22.1,matplotlib=3.10.7,tectonic=0.15.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-5f42819cf793f6424697aea329e648dbf46145dc:b7928fbc2df96b646fb8add8ea5d9eb1bf810bd2-0.tsv b/combinations/mulled-v2-5f42819cf793f6424697aea329e648dbf46145dc:b7928fbc2df96b646fb8add8ea5d9eb1bf810bd2-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+python=3.12,markitdown=0.1.4	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-979fea4b700da20aa00e22deb22f7a863b211c22:a56c24f198a170c53588e1355862c9f54efbd9c8-0.tsv b/combinations/mulled-v2-979fea4b700da20aa00e22deb22f7a863b211c22:a56c24f198a170c53588e1355862c9f54efbd9c8-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+h5py=2.7.0,tabix=0.2.5,cooler=0.7.4	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-b250efaed1e0ad681be0f6d26801fcecf58ff981:ffaf377de66cd24fc1e905342e2a513bd90840e3-0.tsv b/combinations/mulled-v2-b250efaed1e0ad681be0f6d26801fcecf58ff981:ffaf377de66cd24fc1e905342e2a513bd90840e3-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-rcolorbrewer=1.1_3,r-gplots=3.3.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-be2f9ee7cda8d0a3a899e11f72b4947f8b269a32:2b06bfdba7a2a811d5415f8781179f08a45dd0b6-0.tsv b/combinations/mulled-v2-be2f9ee7cda8d0a3a899e11f72b4947f8b269a32:2b06bfdba7a2a811d5415f8781179f08a45dd0b6-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+winnowmap=2.03,minimap2=2.28,telogator2=2.2.3,pbmm2=1.13.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-ee362e4df64f8836bdd4fc0b05e04a09fc595e3e:0c99328cd1f77d65eff2b3c978e8df311a3e017f-0.tsv b/combinations/mulled-v2-ee362e4df64f8836bdd4fc0b05e04a09fc595e3e:0c99328cd1f77d65eff2b3c978e8df311a3e017f-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+goalign=0.3.9,clustalo=1.2.4	quay.io/bioconda/base-glibc-busybox-bash:latest	0
diff --git a/combinations/mulled-v2-f7a49c68bd00a9e0147f58c2f0ef0a7bd67e944b:f18739ac04c0e74dd8b2d33b3b707548e99ec24c-0.tsv b/combinations/mulled-v2-f7a49c68bd00a9e0147f58c2f0ef0a7bd67e944b:f18739ac04c0e74dd8b2d33b3b707548e99ec24c-0.tsv
@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+bcftools=1.22,htslib=1.22.1,samtools=1.22.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

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`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+bcftools=1.22,htslib=1.22.1,gawk=5.3.0,samtools=1.22.1 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+coreprofiler=1.1.8,blast=2.16.0 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+scipy=1.16.2,medaka=2.1.1 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+boto3=1.41.0,botocore=1.41.0,bash=5.2.37,python=3.14.0,copernicusmarine=2.0,jq=1.8.1,netcdf4=1.7.3 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+botocore=1.41.0,boto3=1.41.0,pandas=2.3.3,bash=5.2.37,python=3.14.0,cdsapi=0.7.7 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+bcftools=1.22,htslib=1.22.1,python=3.7 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+bcftools=1.22,htslib=1.22.1,samtools=1.22.1,matplotlib=3.10.7,tectonic=0.15.0 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+python=3.12,markitdown=0.1.4 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+h5py=2.7.0,tabix=0.2.5,cooler=0.7.4 quay.io/bioconda/base-glibc-busybox-bash:latest 0`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+#targets base_image image_build`
	`2`	`+r-rcolorbrewer=1.1_3,r-gplots=3.3.0 quay.io/bioconda/base-glibc-busybox-bash:latest 0`