Fixed regex to only remove pattern from beginning of string.

Author: neogeek

lib/doxdox.js

@@ -14,7 +14,7 @@ const DEFAULT_IGNORE_PATHS = [
     '!./Gulpfile.js'
 ];
 
-const REPLACE_FILENAME_REGEXP = new RegExp(`${process.cwd()}/|./`);
+const REPLACE_FILENAME_REGEXP = new RegExp(`^(${process.cwd()}/|./)`);
 
 /**
  * Parse an input file with parser.