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15 files changed

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‎fastq_samples.txt‎

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‎output/amalgkit/pbarbatus_all/work/quant/SRR14740513/SRR14740513_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 22015332,
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"n_pseudoaligned": 13955472,
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"n_unique": 9195490,
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"p_pseudoaligned": 63.4,
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"p_unique": 41.8,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 12:30:33 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740513 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740513/SRR14740513_1.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740513/SRR14740513_2.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740514/SRR14740514_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 23380303,
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"n_pseudoaligned": 14892850,
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"n_unique": 9604918,
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"p_pseudoaligned": 63.7,
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"p_unique": 41.1,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 12:22:03 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740514 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740514/SRR14740514_1.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740514/SRR14740514_2.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740516/SRR14740516_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 24534298,
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"n_pseudoaligned": 15845245,
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"n_unique": 10278568,
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"p_pseudoaligned": 64.6,
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"p_unique": 41.9,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 13:08:02 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740516 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740516/SRR14740516_1.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740516/SRR14740516_2.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740517/SRR14740517_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 30671634,
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"n_pseudoaligned": 20410671,
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"n_unique": 13206876,
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"p_pseudoaligned": 66.5,
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"p_unique": 43.1,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 13:21:20 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740517 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740517/SRR14740517_1.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740517/SRR14740517_2.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740518/SRR14740518_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 22915605,
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"n_pseudoaligned": 14828657,
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"n_unique": 9532981,
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"p_pseudoaligned": 64.7,
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"p_unique": 41.6,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 13:35:14 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740518 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740518/SRR14740518_2.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740518/SRR14740518_1.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740519/SRR14740519_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 23488321,
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"n_pseudoaligned": 15064886,
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"n_unique": 9744835,
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"p_pseudoaligned": 64.1,
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"p_unique": 41.5,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 13:56:14 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740519 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740519/SRR14740519_2.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740519/SRR14740519_1.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740520/SRR14740520_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 22790280,
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"n_pseudoaligned": 15117407,
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"n_unique": 9767031,
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"p_pseudoaligned": 66.3,
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"p_unique": 42.9,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 14:07:30 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740520 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740520/SRR14740520_2.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740520/SRR14740520_1.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740521/SRR14740521_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 22801705,
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"n_pseudoaligned": 14609367,
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"n_unique": 9535092,
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"p_pseudoaligned": 64.1,
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"p_unique": 41.8,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 14:23:49 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740521 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740521/SRR14740521_2.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740521/SRR14740521_1.amalgkit.fastq.gz"
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}

‎output/amalgkit/pbarbatus_all/work/quant/SRR14740522/SRR14740522_run_info.json‎

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{
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"n_targets": 20873,
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"n_bootstraps": 0,
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"n_processed": 24741397,
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"n_pseudoaligned": 16093485,
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"n_unique": 10363794,
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"p_pseudoaligned": 65.0,
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"p_unique": 41.9,
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"kallisto_version": "0.51.1",
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"index_version": 13,
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"k-mer length": 31,
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"start_time": "Fri Jan 23 14:37:03 2026",
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"call": "kallisto quant --threads 4 -i output/amalgkit/shared/genome/Pogonomyrmex_barbatus/index/Pogonomyrmex_barbatus_transcripts.idx -o output/amalgkit/pbarbatus_all/work/quant/SRR14740522 output/amalgkit/pbarbatus_all/work/getfastq/SRR14740522/SRR14740522_2.amalgkit.fastq.gz output/amalgkit/pbarbatus_all/work/getfastq/SRR14740522/SRR14740522_1.amalgkit.fastq.gz"
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}

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